Video-tracking of zebrafish (Danio rerio) as a biological early warning system using two distinct artificial neural networks: Probabilistic neural network (PNN) and self-organizing map (SOM)
Tài liệu tham khảo
Anichtchik, 2002, Behavioral changes in zebrafish after peripheral injections of catecholaminergic neurotoxins, Society For Neuroscience Abstract Viewer & Itinerary Planner: Abstract, 801, 15
Bae, 2014, Biological early warning system based on the responses of aquatic organisms to disturbances: a review, Sci. Total Environ., 466–467, 635, 10.1016/j.scitotenv.2013.07.075
Baldwin, 1994, In Biomonitoring of coastal waters and estuaries, 1
Berghmans, 2007, Zebrafish offer the potential for a primary screen to identify a wide variety of potential anticonvulsants, Epilepsy Res., 75, 18, 10.1016/j.eplepsyres.2007.03.015
Blaser, 2011, Stimuli affecting zebrafish (Danio rerio) behavior in the light/dark preference test, Physiol. Behav., 104, 831, 10.1016/j.physbeh.2011.07.029
Cabanes, 2010, Learning the number of clusters in self-organizing map, 15
Carvan, 2004, Ethanol effects on the developing zebrafish: neurobehavior and skeletal morphogenesis, Neurotoxicol. Teratol., 26, 757, 10.1016/j.ntt.2004.06.016
Chen, 2011, Developmental exposures to ethanol or dimethylsulfoxide at low concentrations alter locomotor activity in larval zebrafish: implications for behavioral toxicity bioassays, Aquat. Toxicol., 102, 162, 10.1016/j.aquatox.2011.01.010
Chon, 1996, Patternizing communities by using an artificial neural network, Ecol. Modell., 90, 69, 10.1016/0304-3800(95)00148-4
Chon, 2005, Movement behaviour of medaka (Oryzias latipes) in response to sublethal treatments of diazinon and cholinesterase activity in semi-natural conditions, Environ. Monit. Assess., 101, 1
Chon, 2004, Implementation of computational methods to pattern recognition of movement behavior of Blattella germanica (Blattaria: Blattellidae) treated with Ca2+ signal inducing chemicals, Appl. Entomol. Zool., 39, 79, 10.1303/aez.2004.79
Chou, 2010, Chronic exposure of 2,2′,4,4′-tetrabromodiphenyl ether (PBDE-47) alters locomotion behavior in juvenile zebrafish (Danio rerio), Aquat. Toxicol., 98, 388, 10.1016/j.aquatox.2010.03.012
Delcourt, 2006, Comparing the EthoVision 2.3 system and a new computerized multitracking prototype system to measure the swimming behavior in fry fish, Behav. Res. Methods, 38, 704, 10.3758/BF03193904
Egan, 2009, Understanding behavioral and physiological phenotypes of stress and anxiety in zebrafish, Behav. Brain Res., 205, 38, 10.1016/j.bbr.2009.06.022
Emary, 2008, On the application of various probabilistic neural networks in solving different pattern classification problems, World Appl. Sci. J., 4, 772
Fernandes, 2009, Long-term behavioral changes in response to early developmental exposure to ethanol in zebrafish, Alcohol. Clin. Exp. Res., 33, 601, 10.1111/j.1530-0277.2008.00874.x
Garaventa, 2010, Swimming speed alteration of Artemia sp and Brachionus plicatilis as a sub-lethal behavioural end-point for ecotoxicological surveys, Ecotoxicology, 19, 512, 10.1007/s10646-010-0461-8
Gebauer, 2011, Effects of anxiolytics in zebrafish: similarities and differences between benzodiazepines, buspirone and ethanol, Pharmacol. Biochem. Behav., 99, 480, 10.1016/j.pbb.2011.04.021
Gerhardt, 2000, Biomonitoring of polluted water-reviews on actual topics, 95
Gerhardt, 2007, Aquatic behavioral ecotoxicology – prospects and limitations, Human Ecol. Risk Assess., 13, 481, 10.1080/10807030701340839
Gerlai, 2008, Differences in acute alcohol-induced behavioral responses among zebrafish populations, Alcohol. Clin. Exp. Res., 32, 1763, 10.1111/j.1530-0277.2008.00761.x
Gerlai, 2006, Effects of acute and chronic ethanol exposure on the behavior of adult zebrafish (Danio rerio), Pharmacol. Biochem. Behav., 85, 752, 10.1016/j.pbb.2006.11.010
Ghisleni, 2012, The role of CRH in behavioral responses to acute restraint stress in zebrafish, Prog. Neuro Psychopharmacol. Biol. Psy., 36, 176, 10.1016/j.pnpbp.2011.08.016
Grillitsch, 1999, Qualification of spontaneous undirected locomotor behavior of fish for sublethal toxicity testing. Part II. Variability of measurement parameters under toxicant-induced stress, Environ. Toxicol. Chem., 18, 2743, 10.1002/etc.5620181214
Hajmeer, 2002, A probabilistic neural network approach for modeling and classification of bacterial growth/no-growth data, J. Microbiol. Methods, 51, 217, 10.1016/S0167-7012(02)00080-5
Halkin, 1998, Likelihood ratios: getting diagnostic testing into perspective, QJM-Month. J. Assoc. Phys., 91, 247
Israeli-Weinstein, 1998, Behavioral response of carp (Cyprinus carpio) to ammonia stress, Aquaculture, 165, 81, 10.1016/S0044-8486(98)00251-8
Kane, 2005, Fish models in behavioral toxicology: automated techniques, updates and perspectives, 559
Kane, 2004, A video-based movement analysis system to quantify behavioral stress responses of fish, Water Res., 38, 3993, 10.1016/j.watres.2004.06.028
Kim, 2006, Implementation of wavelets and artificial neural networks to detection of toxic response behavior of chironomids (Chironomidae: Diptera) for water quality monitoring, Ecol. Modell., 195, 61, 10.1016/j.ecolmodel.2005.11.010
Knottnerus, 2002, Evidence base of clinical diagnosis – evaluation of diagnostic procedures, British Med. J., 324, 477, 10.1136/bmj.324.7335.477
Kohonen, 2001, An Overview of SOM Literature, 347
Kokkali, 2014, Overview of commercially available bioassays for assessing chemical toxicity in aqueous samples, TRAC Trends Anal. Chem., 61, 133, 10.1016/j.trac.2014.08.001
Kwak, 2002, Pattern recognition of the movement tracks of medaka (Oryzias latipes) in response to sub-lethal treatments of an insecticide by using artificial neural networks, Environ. Pollut., 120, 671, 10.1016/S0269-7491(02)00183-5
Little, 1990, Swimming behavior as an indicator of sublethal toxicity in fish, Environ. Toxicol. Chem., 9, 13, 10.1002/etc.5620090103
Liu, Y., Lee, S.-H., Chon, T.-S., 2011. Analysis of behavioral changes of zebrafish (Danio rerio) in response to formaldehyde using Self-organizing map and a hidden Markov model. Ecol. Modell. 222, 2191–2201.
Liu, Y.C., Bailey, I., Hale, M.E. 2011. Two distinct escape responses in the larval zebrafish, the C-start and S-start, show variability in a well-studied behavior. Integr. Comp. Biol. 51, E221–E221.
López-Galindo, 2010, Biomarker responses in Soléa senegalensis exposed to sodium hypochlorite used as antifouling, Chemosphere, 78, 885, 10.1016/j.chemosphere.2009.11.022
Magalhaes, 2007, Behavioral response of zebrafish Danio rerio Hamilton 1822 to sublethal stress by sodium hypochlorite: ecotoxicological assay using an image analysis biomonitoring system, Ecotoxicology (London England), 16, 417, 10.1007/s10646-007-0144-2
Mayden, 2007, Phylogenetic relationships of Danio within the order Cypriniformes: a framework for comparative and evolutionary studies of a model species, J. Exp. Zool. Part B: Mol. Dev. Evol., 308B, 642, 10.1002/jez.b.21175
Nimkerdphol, 2008, Effect of sodium hypochlorite on zebrafish swimming behavior estimated by fractal dimension analysis, J. Biosci. Bioeng., 105, 486, 10.1263/jbb.105.486
Orger, 2004, Behavioral screening assays in zebrafish, Zebrafish: 2nd Ed. Genet. Genom. Inform., 77, 53
Park, 2003, Applications of artificial neural networks for patterning and predicting aquatic insect species richness in running waters, Ecol. Modell., 160, 265, 10.1016/S0304-3800(02)00258-2
Park, 2005, Computational characterization of behavioral response of medaka (Oryzias latipes) treated with diazinon, Aquat. Toxicol., 71, 215, 10.1016/j.aquatox.2004.11.002
Pather, 2009, Shuttle box learning in zebrafish (Danio rerio), Behav. Brain Res., 196, 323, 10.1016/j.bbr.2008.09.013
Peitsaro, 2003, Modulation of the histaminergic system and behaviour by alpha-fluoromethylhistidine in zebrafish, J. Neurochem., 86, 432, 10.1046/j.1471-4159.2003.01850.x
Piato, 2011, Acute restraint stress in zebrafish: behavioral parameters and purinergic signaling, Neurochem. Res., 36, 1876, 10.1007/s11064-011-0509-z
Qiao, 2010, An adaptative fuzzy neural network based on self-organizing map (SOM), 1
Randrianirina, 2008, Evaluation of the performance of four rapid tests for detection of hepatitis B surface antigen in Antananarivo, Madagascar, J. Virol. Methods, 151, 294, 10.1016/j.jviromet.2008.03.019
Rapp, 2007, Quantitative characterization of animal behavior following blast exposure, Cognitive Neurody., 1, 287, 10.1007/s11571-007-9027-8
Samson, 2001, Delayed effects of embryonic exposure of zebrafish (Danio rerio) to methylmercury (MeHg), Aquat. Toxicol., 51, 369, 10.1016/S0166-445X(00)00128-4
Scales, 2008, How to use an article about a diagnostic test, J. Urol., 180, 469, 10.1016/j.juro.2008.04.026
Scott, 2004, The effects of environmental pollutants on complex fish behaviour: integrating behavioural and physiological indicators of toxicity, Aquat. Toxicol. (Amsterdam, Netherlands), 68, 369, 10.1016/j.aquatox.2004.03.016
Sirtes, 2005, The effects of temperature on sodium hypochlorite short-term stability, pulp dissolution capacity, and antimicrobial efficacy, J. Endod., 31, 669, 10.1097/01.don.0000153846.62144.d2
Spieser, 1996, The influence of cyanotoxins on the behaviour of zebrafish (Brachydanio rerio): methods and results
StatSoft (2005). STATISTICA (data analysis software system) (version 7.1. www.statsoft.com.).
StatSoft (2012). STATISTICA (data analysis software system) (version 11. www.statsoft.com.).
Steinberg, 1995, Effects of atrazine on swimming behavior of zebrafish, Brachydanio rerio, Water Res., 29, 981, 10.1016/0043-1354(94)00217-U
van der Schalie, 2001, Using higher organisms in biological early warning systems for real-time toxicity detection, Biosens. Bioelectron., 16, 457, 10.1016/S0956-5663(01)00160-9
Williams, 2012, Behavioral and physiological effects of RDX on adult zebrafish, Comp. Biochem. Physiol. Part C: Toxicol. Pharmacol., 155, 33
Winter, 2008, Validation of a larval zebrafish locomotor assay for assessing the seizure liability of early-stage development drugs, J. Pharmacol. Toxicol. Methods, 57, 176, 10.1016/j.vascn.2008.01.004
Zhang, 1998, Forecasting with artificial neural networks: the state of the art, Int. J. Forecast., 14, 35, 10.1016/S0169-2070(97)00044-7
Zwinderman, 2008, Statistical models for quantifying diagnostic accuracy with multiple lesions per patient, Biostatistics, 9, 513, 10.1093/biostatistics/kxm052