Vibrio rhizosphaerae sp. nov., một loại vi khuẩn có sắc tố đỏ đối kháng lại vi khuẩn gây bệnh cho thực vật
Tóm tắt
Hai dòng vi khuẩn
Từ khóa
Tài liệu tham khảo
Altschul, 1997, Gapped blast and psi-blast: a new generation of protein database search programs, Nucleic Acids Res, 25, 3389, 10.1093/nar/25.17.3389
Baumann, 1984, Genus I. Vibrio Pacini 1854, 411AL, In Bergey's Manual of Systematic Bacteriology, vol 1, 518
Behrendt, 1999, A taxonomic study of bacteria isolated from grasses: a proposed new species Pseudomonas graminis sp. nov, Int J Syst Bacteriol, 49, 297, 10.1099/00207713-49-1-297
Ben-Haim, 2003, Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis, Int J Syst Evol Microbiol, 53, 309, 10.1099/ijs.0.02402-0
Delorme, 2002, Pseudomonas lini sp. nov., a novel species from bulk and rhizospheric soils, Int J Syst Evol Microbiol, 52, 513, 10.1099/00207713-52-2-513
Farmer, 1992, The genera Vibrio and Photobacterium . In The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, 2952
Felsenstein, 1981, Evolutionary trees from DNA sequences: a maximum likelihood approach, J Mol Evol, 17, 368, 10.1007/BF01734359
Felsenstein, 1985, Confidence limits on phylogenies: an approach using the bootstrap, Evolution, 39, 783, 10.1111/j.1558-5646.1985.tb00420.x
Felsenstein, 1996, Inferring phylogenies from protein sequences by parsimony, distance and likelihood methods, Methods Enzymol, 266, 418, 10.1016/S0076-6879(96)66026-1
Fox, 1992, How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity, Int J Syst Bacteriol, 42, 166, 10.1099/00207713-42-1-166
Hjelm, 2004, Seasonal incidence of autochthonous antagonistic Roseobacter spp. and Vibrionaceae strains in a turbot larva ( Scophthalmus maximus ) rearing system, Appl Environ Microbiol, 70, 7288, 10.1128/AEM.70.12.7288-7294.2004
Kimura, 1980, A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, J Mol Evol, 16, 111, 10.1007/BF01731581
Leifson, 1963, Determination of carbohydrate metabolism of marine bacteria, J Bacteriol, 85, 1183, 10.1128/JB.85.5.1183-1184.1963
Loganathan, 2004, Swaminathania salitolerans gen. nov., sp. nov., a salt-tolerant, nitrogen-fixing and phosphate-solubilizing bacterium from wild rice ( Porteresia coarctata Tateoka), Int J Syst Evol Microbiol, 54, 1185, 10.1099/ijs.0.02817-0
Loganathan, 1999, Isolation and characterization of two genetically distant groups of Acetobacter diazotrophicus from a new host plant Eleusine coracana L, J Appl Microbiol, 87, 167, 10.1046/j.1365-2672.1999.00804.x
Long, 2001, Antagonistic interactions among marine pelagic bacteria, Appl Environ Microbiol, 67, 4975, 10.1128/AEM.67.11.4975-4983.2001
Marmur, 1962, Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature, J Mol Biol, 5, 109, 10.1016/S0022-2836(62)80066-7
Reddy, 2000, Arthrobacter flavus sp. nov., a psychrophilic bacterium isolated from a pond in McMurdo Dry Valley, Antarctica, Int J Syst Evol Microbiol, 50, 1553, 10.1099/00207713-50-4-1553
Saitou, 1987, The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol Biol Evol, 4, 406
Sambrook, 1989, Molecular Cloning: a Laboratory Manual
Shieh, 2000, Vibrio aerogenes sp. nov., a facultatively anaerobic marine bacterium that ferments glucose with gas production, Int J Syst Evol Microbiol, 50, 321, 10.1099/00207713-50-1-321
Shieh, 2003, Vibrio ruber sp. nov., a red, facultatively anaerobic, marine bacterium isolated from sea water, Int J Syst Evol Microbiol, 53, 479, 10.1099/ijs.0.02307-0
Shivaji, 1992, Sphingobacterium antarcticus sp. nov., a psychrotrophic bacterium from the soils of Schirmacher Oasis, Antarctica, Int J Syst Bacteriol, 42, 102, 10.1099/00207713-42-1-102
Stackebrandt, 1994, Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology, Int J Syst Bacteriol, 44, 846, 10.1099/00207713-44-4-846
Stackebrandt, 2002, Report of the ad hoc committee for the re-evaluations of the species definition in bacteriology, Int J Syst Evol Microbiol, 52, 1043
Sugita, 1997, Vibrio sp. strain NM 10, isolated from the intestine of a Japanese coastal fish, has an inhibitory effect against Pasteurella piscicida, Appl Environ Microbiol, 63, 4986, 10.1128/AEM.63.12.4986-4989.1997
Thompson, 1994, clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res, 22, 4673, 10.1093/nar/22.22.4673
Thompson, 2004, Biodiversity of vibrios, Microbiol Mol Biol Rev, 68, 403, 10.1128/MMBR.68.3.403-431.2004
Thompson, 2005, Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis, Appl Environ Microbiol, 71, 5107, 10.1128/AEM.71.9.5107-5115.2005
Tourova, 1987, Identification of microorganisms by rapid DNA-DNA hybridisation, Methods Microbiol, 19, 333, 10.1016/S0580-9517(08)70414-8