Various short autonomously replicating sequences from the yeast Kluyveromyces marxianus seemingly without canonical consensus
Tài liệu tham khảo
Abdel-Banat, 2010, High-temperature fermentation: how can processes for ethanol production at high temperatures become superior to the traditional process using mesophilic yeast?, Appl. Microbiol. Biotechnol., 85, 861, 10.1007/s00253-009-2248-5
Abdel-Banat, 2010, Random and targeted gene integrations through the control of non-homologous end joining in the yeast Kluyveromyces marxianus, Yeast, 27, 29
Akada, 2006, PCR-mediated seamless gene deletion and marker recycling in Saccharomyces cerevisiae, Yeast, 23, 399, 10.1002/yea.1365
Ausubel, 1999
Brachmann, 1998, Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications, Yeast, 14, 115, 10.1002/(SICI)1097-0061(19980130)14:2<115::AID-YEA204>3.0.CO;2-2
Boeke, 1987, 5-Fluoroorotic acid as a selective agent in yeast molecular genetics, Methods Enzymol., 154, 164, 10.1016/0076-6879(87)54076-9
Cha-aim, 2009, Reliable fusion PCR mediated by GC-rich overlap sequences, Gene, 434, 43, 10.1016/j.gene.2008.12.014
Cha-Aim, 2012, Fusion PCR via novel overlap sequences, Methods Mol. Biol., 852, 97, 10.1007/978-1-61779-564-0_8
Clyne, 1995, Genetic analysis of an ARS element from the fission yeast Schizosaccharomyces pombe, EMBO J, 14, 6348, 10.1002/j.1460-2075.1995.tb00326.x
Crooks, 2004, WebLogo: a sequence logo generator, Genome Res, 14, 1188, 10.1101/gr.849004
DePamphilis, 2003, Eukaryotic DNA replication Origins: Reconciling disparate data, Cell, 114, 274, 10.1016/S0092-8674(03)00604-4
Dhar, 2012, Structure, replication efficiency and fragility of yeast ARS elements, Res. Microbiol., 163, 243, 10.1016/j.resmic.2012.03.003
Deshpande, 1992, The ARS consensus sequence is required for chromosomal origin function in Saccharomyces cerevisiae, Mol. Cell. Biol., 12, 4305
Foureau, 2013, Characterization of an autonomously replicating sequence in Candida guilliermondii, Microbiol. Res., 168, 580, 10.1016/j.micres.2013.04.006
Gilbert, 2001, Making sense of eukaryotic DNA replication origins, Science, 294, 96, 10.1126/science.1061724
Hoshida, 2014, Non-homologous end joining-mediated functional marker selection for DNA cloning in the yeast Kluyveromyces marxianus, Yeast, 31, 29, 10.1002/yea.2993
Iborra, 1994, Kluyveromyces marxianus small DNA fragments contain both autonomous replicative and centromeric elements that also function in Kluyveromyces lactis, Yeast, 10, 1621, 10.1002/yea.320101211
Irene, 2004, Identification of the sequences required for chromosomal replicator function in Kluyveromyces lactis, Mol. Microbiol., 51, 1413, 10.1046/j.1365-2958.2003.03914.x
Kelly, 2019, Dynamics of DNA replication in a eukaryotic cell, Proc. Natl. Acad. Sci. U. S. A., 116, 4973, 10.1073/pnas.1818680116
Lertwattanasakul, 2015, Genetic basis of the highly efficient yeast Kluyveromyces marxianus: complete genome sequence and transcriptome analyses, Biotechnol. Biofuels, 8, 47, 10.1186/s13068-015-0227-x
Liachko, 2010, A comprehensive genome-wide map of autonomously replicating sequences in a naive genome, PLoS Genet, 6, 10.1371/journal.pgen.1000946
Liachko, 2014, An autonomously replicating sequence for use in a wide range of budding yeasts, FEMS Yeast Res, 14, 364, 10.1111/1567-1364.12123
Liachko, 2011, Novel features of ARS selection in budding yeast Lachancea kluyveri, BMC Genomics, 12, 633, 10.1186/1471-2164-12-633
Limtong, 2007, Production of fuel ethanol at high temperature from sugar cane juice by a newly isolated Kluyveromyces marxianus, Bioresour. Technol., 98, 3367, 10.1016/j.biortech.2006.10.044
Méchali, 2010, Eukaryotic DNA replication origins: many choices for appropriate answers, Nat. Rev. Mol. Cell Biol., 11, 728, 10.1038/nrm2976
Méchali, 2013, Genetic and epigenetic determinants of DNA replication origins, position and activation, Curr. Opin. Genet. Dev., 23, 124, 10.1016/j.gde.2013.02.010
Nieduszynski, 2006, Genome-wide identification of replication origins in yeast by comparative genomics, Genes Dev, 20, 1874, 10.1101/gad.385306
Nonklang, 2008, High-temperature ethanol fermentation and transformation with linear DNA in the thermotolerant yeast Kluyveromyces marxianus DMKU3–1042, Appl. Environ. Microbiol., 74, 7514, 10.1128/AEM.01854-08
Prioleau, 2003, Replication of the chicken β-globin locus: Early-firing origins at the 5ˊ HS4 insulator and the ρ- and βA-globin genes show opposite epigenetic modifications, Mol. Cell. Biol., 23, 3536, 10.1128/MCB.23.10.3536-3549.2003
Reeves, 1990, The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure, J. Biol. Chem., 265, 8573, 10.1016/S0021-9258(19)38926-4
Sikorski, 1989, A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae, Genetics, 122, 19, 10.1093/genetics/122.1.19
Stinchcomb, 1980, Eukaryotic DNA segments capable of autonomous replication in yeast, Proc. Natl. Acad. Sci. U. S. A., 77, 4559, 10.1073/pnas.77.8.4559
Suzuki, 2015, Gene expression analysis using strains constructed by NHEJ-mediated one-step promoter cloning in the yeast Kluyveromyces marxianus, FEMS Yeast Res, 15, fov059, 10.1093/femsyr/fov059
