Variability of human immunodeficiency virus-1 in the female genital reservoir during genital reactivation of herpes simplex virus type 2
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Coombs, 2003, Recent observations on HIV type-1 infection in the genital tract of men and women, AIDS, 17, 455, 10.1097/00002030-200303070-00001
Zhu, 1996, Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: evidence for viral compartmentalization and selection during sexual transmission, J Virol, 70, 3098, 10.1128/JVI.70.5.3098-3107.1996
Bull, 2009, Compartmentalization of HIV-1 within the female genital tract is due to monotypic and low-diversity variants not distinct viral populations, PLoS ONE, 4, e7122, 10.1371/journal.pone.0007122
Bull, 2013, Human immunodeficiency viruses appear compartmentalized to the female genital tract in cross-sectional analyses but genital lineages do not persist over time, J Infect Dis, 207, 1206, 10.1093/infdis/jit016
Kemal, 2003, HIV-1 in genital tract and plasma of women: compartmentalization of viral sequences, coreceptor usage, and glycosylation, Proc Natl Acad Sci USA, 100, 12972, 10.1073/pnas.2134064100
Kovacs, 2001, Determinants of HIV-1 shedding in the genital tract of women, Lancet, 358, 1593, 10.1016/S0140-6736(01)06653-3
Philpott, 2005, Human immunodeficiency virus type 1 genomic RNA sequences in the female genital tract and blood: compartmentalization and intrapatient recombination, J Virol, 79, 353, 10.1128/JVI.79.1.353-363.2005
Mostad, 1998, Cervical and vaginal shedding of human immunodeficiency virus type 1-infected cells throughout the menstrual cycle, J Infect Dis, 178, 983, 10.1086/515665
LeGoff, 2007, Cervicovaginal HIV-1 and herpes simplex virus type 2 shedding during genital ulcer disease episodes, AIDS, 21, 1569, 10.1097/QAD.0b013e32825a69bd
McClelland, 2002, Association between cervical shedding of herpes simplex virus and HIV-1, AIDS, 16, 2425, 10.1097/00002030-200212060-00007
Mostad, 2000, Cervical shedding of herpes simplex virus in human immunodeficiency virus-infected women: effects of hormonal contraception, pregnancy, and vitamin A deficiency, J Infect Dis, 181, 58, 10.1086/315188
Mbopi-Kéou, 2000, Interactions between herpes simplex virus type 2 and human immunodeficiency virus type 1 infection in African women: Opportunities for intervention, J Infect Dis, 182, 1090, 10.1086/315836
Nagot, 2005, Longitudinal assessment of HIV-1 and HSV-2 shedding in the genital tract of West African women, J Acquir Immune Defic Syndr, 39, 632
Boeras, 2011, Role of donor genital tract HIV-1 diversity in the transmission bottleneck, Proc Natl Acad Sci USA, 108, E1156, 10.1073/pnas.1103764108
Chomont, 2007, Early archives of genetically-restricted proviral DNA in the female genital tract after heterosexual transmission of HIV-1, AIDS, 21, 153, 10.1097/QAD.0b013e328011f94b
Mayaud, 2009, Impact of acyclovir on genital and plasma HIV-1 RNA, genital herpes simplex virus type 2 DNA, and ulcer healing among HIV-1-infected African women with herpes ulcers: a randomized placebo-controlled trial, J Infect Dis, 200, 216, 10.1086/599991
Legoff, 2006, Real-time PCR quantification of genital shedding of herpes simplex virus (HSV) and human immunodeficiency virus (HIV) in women coinfected with HSV and HIV, J Clin Microbiol, 44, 423, 10.1128/JCM.44.2.423-432.2006
Roques, 1999, An unusual HIV type 1 env sequence embedded in a mosaic virus from Cameroon: Identification of a new env clade. European Network on the study of in utero transmission of HIV-1, AIDS Res Hum Retroviruses, 15, 1585, 10.1089/088922299309883
Tamura, 2011, MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods, Mol Biol Evol, 28, 2731, 10.1093/molbev/msr121
Tamura, 1993, Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees, Mol Biol Evol, 10, 512
Felsenstein, 1985, Confidence limits on phylogenies: an approach using the bootstrap, Evolution, 39, 783, 10.2307/2408678
Slatkin, 1989, A cladistic measure of gene flow inferred from the phylogenies of alleles, Genetics, 123, 603, 10.1093/genetics/123.3.603
Poss, 1998, Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1, J Virol, 72, 8240, 10.1128/JVI.72.10.8240-8251.1998
Felsenstein, 1989, PHYLIP-phylogeny inference package (version 3.2), Cladistics, 5, 163
Wilgenbusch, 2002
Nei, 2000
Eyzaguirre, 2013, Elevated hypermutation levels in HIV-1 natural viral suppressors, Virology, 443, 306, 10.1016/j.virol.2013.05.019
Rose, 2000, Detecting hypermutations in viral sequences with an emphasis on G-->A hypermutation, Bioinformatics, 16, 400, 10.1093/bioinformatics/16.4.400
Xia, 2013, DAMBE5: a comprehensive software package for data analysis in molecular biology and evolution, Mol Biol Evol, 30, 1720, 10.1093/molbev/mst064
Rollenhagen, 2014, Herpes simplex virus type-2 stimulates HIV-1 replication in cervical tissues: implications for HIV-1 transmission and efficacy of anti-HIV-1 microbicides, Mucosal Immunol, 7, 1165, 10.1038/mi.2014.3
Lee, 2012, Herpes simplex virus-2 in the genital mucosa: insights into the mucosal host response and vaccine development, Curr Opin Infect Dis, 25, 92, 10.1097/QCO.0b013e32834e9a56
Kimura, 1980, A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, J Mol Evol, 16, 111, 10.1007/BF01731581