Validation of fragment analysis by capillary electrophoresis to resolve mixed infections by Cryptosporidium parvum subpopulations
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Ajzenberg D, Collinet F, Mercier A, Vignoles P, Dardé ML (2010) Genotyping of Toxoplasma gondii isolates with 15 microsatellite markers in a single multiplex PCR assay. J Clin Microbiol 48:4641–4645
Cacciò S, Homan W, Camilli R, Traldi G, Kortbeek T, Pozio F (2000) A microsatellite marker reveals population heterogeneity within humans and animal genotypes of Cryptosporidium parvum. Parasitology 120:237–244
Cama V, Gilman RH, Vivar A, Ticona E, Ortega Y, Bern C, Xiao L (2006) Mixed Cryptosporidium infections and HIV. Emerg Infect Dis 12:1025–1028
Díaz P, Hadfield SJ, Quílez J, Soilán M, López C, Panadero R, Díez-Baños P, Morrondo P, Chalmers RM (2012) Assessment of three methods for multilocus fragment typing of Cryptosporidium parvum from domestic ruminants in north west Spain. Vet Parasitol 186:188–195
Drumo R, Widmer G, Morrison LJ, Tait A, Grelloni V, D’Avino N, Pozio E, Cacciò SM (2012) Evidence of host-associated populations of Cryptosporidium parvum in Italy. Appl Environ Microbiol 78:3523–3529
Enemark HL, Ahrens P, Juel CD, Petersen E, Petersen RF, Andersen JS, Lind P, Thamsborg SM (2002) Molecular characterization of Danish Cryptosporidium parvum isolates. Parasitology 125:331–341
Geurden T, Geldhof P, Levecke B, Martens C, Berkwens D, Casaert S, Vercruysse J, Claerebout E (2008) Mixed Giardia duodenalis assemblage A and E infections in calves. Int J Parasitol 38:259–264
Grinberg A, Biggs PJ, Dukkipati VSR, George TT (2013) Extensive intra-host genetic diversity uncovered in Cryptosporidium parvum using next generation sequencing. Infect Genet Evol 15:18–24
Hadfield SJ, Chalmers RM (2012) Detection and characterization of Cryptosporidium cuniculus by real-time PCR. Parasitol Res 111:1385–1390
Hadfield SJ, Robinson G, Elwin K, Chalmers RM (2011) Detection and differentiation of Cryptosporidium spp. in human clinical samples by use of real-time PCR. J Clin Microbiol 49:918–924
Jeníková M, Němejc K, Sak B, Květoňová D, Kváč M (2011) New view on the age-specificity of pig Cryptosporidium by species-specific primers for distinguishing Cryptosporidium suis and Cryptosporidium pig genotype II. Vet Parasitol 176:120–125
Kapitanović S, Cacev T, Spaventi R, Pavelić K (2001) Submerged gel electrophoresis on Spreadex gels—a new method for APC gene mutation detection. J Mol Med (Berl) 79:333–337
Kiwuwa MS, Ribacke U, Moll K, Byarugaba J, Lundblom K, Färnert A, Fred K, Wahlgren M (2013) Genetic diversity of Plasmodium falciparum infections in mild and severe malaria of children from Kampala, Uganda. Parasitol Res 112:1691–1700
Luqmani YA, Mathew M, Lobo S, Temmim L (1999) High-resolution electrophoretic DNA fragment analysis using Spreadex gels. Anal Biochem 275:116–118
Meijerink E, Kozulic B, Stranziger G, Neuenschwander S (2001) Picogram cloning and direct in situ sequencing of DNA from gel pieces. Biotechniques 31:802–810
Meudt HM, Clarke AC (2007) Almost forgotten or latest practice? AFLP applications, analyses and advances. Trends Plant Sci 12:106–117
Němejc K, Sak B, Květoňová D, Kernerová N, Rost M, Cama VA, Kváč M (2013) Occurrence of Cryptosporidium suis and Cryptosporidium scrofarum on commercial swine farms in the Czech Republic and its associations with age and husbandry practices. Parasitol Res 112:1143–1154
Oura CAL, Asiimwe BB, Weir W, Lubega GW, Tait A (2005) Population genetic analysis and sub-structuring of Theileria parva in Uganda. Mol Biochem Parasitol 140:229–239
Pasqualotto AC, Denning DW, Anderson MJ (2007) A cautionary tale: lack of consistency in allele sizes between two laboratories for a published multilocus microsatellite typing system. J Clin Microbiol 45:522–528
Quílez J, Vergara-Castiblanco C, Monteagudo L, Del Cacho E, Sánchez-Acedo C (2011) Multilocus fragment typing and genetic structure of Cryptosporidium parvum isolates from diarrheic preweaned calves in Spain. Appl Environ Microbiol 77:7779–7786
Quílez J, Vergara-Castiblanco C, Monteagudo L, Del Cacho E, Sánchez-Acedo C (2013) Host association of Cryptosporidium parvum populations infecting domestic ruminants in Spain. Appl Environ Microbiol 79:5363–5371
Rieux A, Chartier C, Pors I, Delafosse A, Paraud C (2013) Molecular characterization of Cryptosporidium isolates from high-excreting young dairy calves in dairy cattle herds in Western France. Parasitol Res 112:3423–3431
Santín M, Zarlenga DS (2009) A multiplex polymerase chain reaction assay to simultaneously distinguish Cryptosporidium species of veterinary and public health concern in cattle. Vet Parasitol 166:32–37
Schindler AR, Abs El-Osta YG, Stevens M, Sinclair MI, Gasser RB (2005) Capillary electrophoretic analysis of fragment length polymorphism in ribosomal markers of Cryptosporidium from humans. Mol Cell Probes 19:394–399
Schwenkenbecher JM, Wirth T, Schnur LF, Jaffe CL, Schallig H, Al-Jawabreh A, Hamarsheh O, Azmi K, Pratlong F, Schönian G (2006) Microsatellite analysis reveals genetic structure of Leishmania tropica. Int J Parasitol 36:237–246
Shinde D, Lai Y, Sun F, Arnhelm N (2003) Taq DNA polymerase slippage mutation rates measured by PCR and quasi-likelihood analysis: (CA/GT)n and (A/T)n microsatellites. Nucleic Acids Res 31:974–980
Tanriverdi S, Arslan MO, Akiyoshi DE, Tzipori S, Widmer G (2003) Identification of genotypically mixed Cryptosporidium parvum populations in humans and calves. Mol Biochem Parasitol 130:13–22
Waldron LS, Power ML (2011) Fluorescence analysis detects gp60 subtype diversity in Cryptosporidium infections. Infect Genet Evol 11:1388–1395
Wenz HM, Robertson JM, Menchen S, Oaks F, Demorest DM, Scheibler D, Rosenblum BB, Wike C, Gilbert DA, Efcavitch W (1998) High-precision genotyping by denaturing capillary electrophoresis. Genome Res 8:69–80