Validation of a next-generation sequencing oncology panel optimized for low input DNA

Cancer Genetics - Tập 228 - Trang 55-63 - 2018
Robyn T. Sussman1, Sydney Shaffer1, Elizabeth M. Azzato1, Daniel DeSloover1, Midhat S. Farooqi1, Anders Meyer1, David B. Lieberman1, Ashkan Bigdeli1, Carmela Paolillo1, Karthik Ganapathy1, Shrey Sukhadia1, Jason N. Rosenbaum1, Robert D. Daber1, Jennifer J.D. Morrissette1
1Hospital of the University of Pennsylvania, Division of Precision and Computational Diagnostics, Department of Pathology & Laboratory Medicine, 3020 Market Street, Suite 220, Philadelphia, PA 19104, United States

Tài liệu tham khảo

Gonzalez de Castro, 2013, Personalized cancer medicine: molecular diagnostics, predictive biomarkers, and drug resistance, Clin Pharmacol Ther, 93, 252, 10.1038/clpt.2012.237 Ferraz, 2011, Current state and future perspective of molecular diagnosis of fine-needle aspiration biopsy of thyroid nodules, J Clin Endocrinol Metab, 96, 2016, 10.1210/jc.2010-2567 Lindeman, 2013, J Mol Diagn, 15, 415, 10.1016/j.jmoldx.2013.03.001 Grossmann, 2012, Molecular testing in malignant melanoma, Diagn Cytopathol, 40, 503, 10.1002/dc.22810 Shi, 2012, Molecular testing in colorectal cancer: diagnosis of Lynch syndrome and personalized cancer medicine, Am J Clin Pathol, 137, 847, 10.1309/AJCPI83DINULUJNI Lee, 2013, Impact of EGFR inhibitor in non-small cell lung cancer on progression-free and overall survival: a meta-analysis, J Natl Cancer Inst, 105, 595, 10.1093/jnci/djt072 Cheng, 2012, Molecular pathology of lung cancer: key to personalized medicine, Mod Pathol, 25, 347, 10.1038/modpathol.2011.215 Pritchard, 2011, Colorectal cancer molecular biology moves into clinical practice, Gut, 60, 116, 10.1136/gut.2009.206250 Stephens, 2012, The landscape of cancer genes and mutational processes in breast cancer, Nature, 486, 400, 10.1038/nature11017 2012, Comprehensive genomic characterization of squamous cell lung cancers, Nature, 489, 519, 10.1038/nature11404 2011, Integrated genomic analyses of ovarian carcinoma, Nature, 474, 609, 10.1038/nature10166 Lenk, 2014 Cottrell, 2014, Validation of a next-generation sequencing assay for clinical molecular oncology, J Mol Diagn, 16, 89, 10.1016/j.jmoldx.2013.10.002 Frampton, 2013, Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing, Nat Biotechnol, 31, 1023, 10.1038/nbt.2696 Fassina, 2012, Fine needle aspiration of non-small cell lung cancer: current state and future perspective, Cytopathology, 23, 213, 10.1111/j.1365-2303.2012.01005.x Travis, 2010, Pathologic diagnosis of advanced lung cancer based on small biopsies and cytology: a paradigm shift, J Thorac Oncol, 5, 411, 10.1097/JTO.0b013e3181d57f6e Saieg, 2012, The use of FTA cards for preserving unfixed cytological material for high-throughput molecular analysis, Cancer Cytopathol, 120, 206, 10.1002/cncy.20205 Young, 2013, Clinical next-generation sequencing successfully applied to fine-needle aspirations of pulmonary and pancreatic neoplasms, Cancer Cytopathol, 121, 688, 10.1002/cncy.21338 Karnes, 2014, Targeted next-generation sequencing using fine-needle aspirates from adenocarcinomas of the lung, Cancer Cytopathol, 122, 104, 10.1002/cncy.21361 Kanagal-Shamanna, 2014, Next-generation sequencing-based multi-gene mutation profiling of solid tumors using fine needle aspiration samples: promises and challenges for routine clinical diagnostics, Mod Pathol, 27, 314, 10.1038/modpathol.2013.122 de Leng, 2016, Targeted next generation sequencing as a reliable diagnostic assay for the detection of somatic mutations in tumours using minimal DNA Amounts from formalin fixed paraffin embedded material, PLoS One, 11, 10.1371/journal.pone.0149405 Mehrotra, 2017, Versatile ion S5XL sequencer for targeted next generation sequencing of solid tumors in a clinical laboratory, PLoS One, 12, 10.1371/journal.pone.0181968 Roy-Chowdhuri, 2018, Salvaging the supernatant: next generation cytopathology for solid tumor mutation profiling, Mod Pathol, 10.1038/s41379-018-0006-x Vanni, 2015, Next-generation sequencing workflow for NSCLC critical samples using a targeted sequencing approach by ion torrent PGM platform, Int J Mol Sci, 16, 28765, 10.3390/ijms161226129 Kadri, 2017, Clinical validation of a next-generation sequencing genomic oncology panel via cross-platform benchmarking against established amplicon sequencing assays, J Mol Diagn, 19, 43, 10.1016/j.jmoldx.2016.07.012