VMD: Visual molecular dynamics

Carson, 1991, RIBBONS 2.0, J. Appl. Crystallogr., 24, 958, 10.1107/S0021889891007240

Minnesota Supercomputer Center, 1993

Ferrin, 1988, The MIDAS database system, J. Mol. Graphics, 6, 2, 10.1016/0263-7855(88)80053-5

Ferrin, 1991, An affordable approach to interactive desktop molecular modeling, J. Mol. Graphics, 9, 27, 10.1016/0263-7855(91)80030-4

Evans, 1993, SETOR: Hardware lighted three-dimensional solid model representations of macromolecules, J. Mol. Graphics, 11, 134, 10.1016/0263-7855(93)87009-T

Nicholls, 1991, Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons, Proteins: Struct. Function Genet., 11, 282, 10.1002/prot.340110407

Zhao, 1995

Ousterhout, 1994

Brooks, 1983, CHARMm: A program for macromolecular energy, minimization, and dynamics calculations, J. Comput. Chem., 4, 187, 10.1002/jcc.540040211

Brünger, 1988

Bernstein, 1977, The protein data bank: A computer archive, J. Mol. Biol., 112, 535, 10.1016/S0022-2836(77)80200-3

Merritt, 1994, Raster3D version 2.0—a program for photorealistic molecular graphics, Acta Crystallogr. D, 50, 869, 10.1107/S0907444994006396

Walters, 1992

Varshney, 1994, Linearly scalable computation of smooth molecular surfaces, IEEE Comp. Graphics Appl., 14, 19, 10.1109/38.310720

Nelson, 1995, MDScope—a visual computing environment for structural biology, Comput. Phys. Commun., 91, 111, 10.1016/0010-4655(95)00045-H

Nelson, 1996, NAMD—a parallel, object-oriented molecular dynamics program, J. Supercomput. Appl., 10.1177/109434209601000401

Surles, 1994, Sculpting proteins interactively: Continual energy minimization embedded in a graphical modeling system, Protein Sci., 3, 198, 10.1002/pro.5560030205

Oesterhelt, 1973, Functions of a new photoreceptor membrane, 70, 2853

Pugliese, 1993, Three-dimensional structure of the tetragonal crystal form of egg-white avidin in its functional complex with biotin at 2.7Åresolution, J. Mol. Biol., 231, 698, 10.1006/jmbi.1993.1321