Use of cultivation-dependent and -independent techniques to assess contamination of central venous catheters: a pilot study

Mette Kathrine Larsen1, Trine Rolighed Thomsen1, Claus Moser2, Niels Høiby2, Per Halkjær Nielsen3
1Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Sohngaardsholmsvej 49, DK-9000 Aalborg, Denmark
2Department of Clinical Microbiology, Rigshospitalet, University of Copenhagen, Juliane Maries Vej 22, DK 2100, Copenhagen, Denmark
3Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Sohngaardsholmsvej 49, DK 9000 Aalborg, Denmark

Tóm tắt

Abstract Background Catheters are the most common cause of nosocomial infections and are associated with increased risk of mortality, length of hospital stay and cost. Prevention of infections and fast and correct diagnosis is highly important. Methods In this study traditional semiquantitative culture-dependent methods for diagnosis of bacteria involved in central venous catheter-related infections as described by Maki were compared with the following culture-independent molecular biological methods: Clone libraries, denaturant gradient gel electrophoresis, phylogeny and fluorescence in situ hybridization. Results In accordance with previous studies, the cultivation of central venous catheters from 18 patients revealed that S. epidermidis and other coagulase-negative staphylococci were most abundant and that a few other microorganisms such as P. aeruginosa and K. pneumoniae occasionally were found on the catheters. The molecular analysis using clone libraries and sequencing, denaturant gradient gel electrophoresis and sequencing provided several important results. The species found by cultivation were confirmed by molecular methods. However, many other bacteria belonging to the phyla Proteobacteria, Firmicutes, Actinobacteria and Bacteroidetes were also found, stressing that only a minor portion of the species present were found by cultivation. Some of these bacteria are known to be pathogens, some have not before been described in relation to human health, and some were not closely related to known pathogens and may represent new pathogenic species. Furthermore, there was a clear difference between the bacterial species found in biofilm on the external (exluminal) and internal (luminal) side of the central venous catheter, which can not be detected by Maki's method. Polymicrobial biofilms were observed on most of the catheters and were much more common than the cultivation-dependent methods indicated. Conclusion The results show that diagnosis based on molecular methods improves the detection of microorganisms involved in central catheter-related infections. The importance of these microorganisms needs to be investigated further, also in relation to contamination risk from improper catheter handling, as only in vivo contaminants are of interest. This information can be used for development of fast and more reliable diagnostic tools, which can be used in combination with traditional methods.

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Tài liệu tham khảo

Raad I: Intravascular-catheter-related infections. Lancet. 1998, 351: 893-8. 10.1016/S0140-6736(97)10006-X.

Lyytikainen O, Lumio J, Sarkkinen H, Kolho E, Kostiala A, Ruutu P: Nosocomial bloodstream infections in Finnish hospitals during 1999–2000. Clin Infect Dis. 2002, 35 (2): e14-9. 10.1086/340981.

Bouza E, Burillo A, Munoz P: Catheter-related infections: diagnosis and intravascular treatment. Clin Microbiol Infect. 2002, 8: 265-74. 10.1046/j.1469-0691.2002.00385.x.

Chatzinikolaou I, Hanna H, Hachem R, Alakech B, Tarrand J, Raad I: Differential quantitative blood cultures for the diagnosis of catheter-related bloodstream infections associated with short- and long-term catheters: a prospective study. Diagn Microbiol Infect Dis. 2004, 50: 167-72. 10.1016/j.diagmicrobio.2004.07.007.

Cicalini S, Palmieri F, Noto P, Boumis E, Petrosillo N: Diagnosis of intra vascular catheter-related infection. J Vasc Access. 2002, 3: 114-9.

Warwick S, Wilks M, Hennessy E, Powell-Tuck J, Small M, Sharp J, Millar M: Use of quantitative 16S ribosomal DNA detection for diagnosis of central vascular catheter-associated bacterial infection. J Clin Microbiol. 2004, 42: 1402-8. 10.1128/JCM.42.4.1402-1408.2004.

Maki D, Weise C, Sarafin H: A semiquantitative culture method for identifying intravenous-catheter-related infection. N Engl J Med. 1977, 296: 1305-1309.

Timsit J: Diagnosis and prevention of catheter-related infections. Curr Opin Crit Care. 2007, 13: 563-71. 10.1097/MCC.0b013e3282efa03f.

Cormican M: Device-associated infection: the biofilm-related problem in health care. Biofilms in Medicine, Industry and Environmental Biotechnology. Edited by: Lens P. 2003

Costerton W, Veeh R, Shirtliff M, Pasmore M, Post C, Ehrlich G: The application of biofilm science to the study and control of chronic bacterial infections. J Clin Invest. 2003, 112: 1466-1477.

Fux CA, Costerton JW, Stewart PS, Stoodley P: Survival strategies of infectious biofilms. Trends in Microbiol. 2005, 13: 34-40. 10.1016/j.tim.2004.11.010.

Amann R, Ludwig W, Schleifer KH: Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev. 1995, 59: 143-169.

Trautner B, Darouiche R: Catheter-associated infections: pathogenesis affects prevention. Arch Intern Med. 2004, 164: 842-50. 10.1001/archinte.164.8.842.

Bouza E, San Juan R, Munoz P, Pascau J, Voss A, Desco M: A European perspective on intravascular catheter-related infections report on the microbiology workload, aetiology and antimicrobial susceptibility (ESGNI-005 Study). Clin Microbiol Infect. 2004, 10: 838-42. 10.1111/j.1469-0691.2004.00936.x.

Donlan R: Biofilms and device-associated infections. Emerg Infect Dis. 2001, 7: 277-81.

Linde HJ, Hahn J, Holler E, Reischl U, Lehn N: Septicemia due to Acinetobacter junii. J Clin Microbiol. 2002, 40: 2696-7. 10.1128/JCM.40.7.2696-2697.2002.

Schinabeck M, Ghannoum M: Catheter-related infections-diagnosis, treatment and prevention. Clin Microbiol Newsletter. 2003, 25: 113-118. 10.1016/S0196-4399(03)80036-3.

Juretschko S, Loy A, Lehner A, Wagner M: The microbial community composition of a nitrifying-dentrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. J Syst Appl Microbiol. 2002, 25: 84-99. 10.1078/0723-2020-00093.

Neufeld JD, Mohn WW: Unexpectedly high bacterial diversity in arctic tundra relative to boreal forest soils, revealed by serial analysis of ribosomal sequence tags. Appl Environ Microbiol. 2005, 71: 5710-5718. 10.1128/AEM.71.10.5710-5718.2005.

Thomsen TR, Ramsing NB, Finster K: Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment. Appl Environ Microbiol. 2001, 67: 1646-1656. 10.1128/AEM.67.4.1646-1656.2001.

Ott S, El Mokhtari N, Musfeldt M, Hellmig S, Freitag S, Rehman A, Kuhbacher T, Nikolaus S, Namsolleck P, Blaut M, Hampe J, Sahly H, Reinecke A, Haake N, Gunther R, Kruger D, Lins M, Herrmann G, Folsch UR, Simon R, Schreiber S: Detection of diverse bacterial signatures in atherosclerotic lesions of patients with coronary heart disease. Circulation. 2006, 113: 929-37. 10.1161/CIRCULATIONAHA.105.579979.

Sakamoto M, Rocas IN, Siqueira JF, Benno Y: Molecular analysis of bacteria in asymptomatic and symptomatic endodontic infections. Oral Microbiol Immunol. 2006, 21: 112-22. 10.1111/j.1399-302X.2006.00270.x.

Lau S, Woo P, Woo G, Yuen K: Catheter-related Microbacterium bacteremia identified by 16S rRNA gene sequencing. J Clin Microbiol. 2002, 40: 2681-5. 10.1128/JCM.40.7.2681-2685.2002.

Woo PC, Tsoi HW, Leung KW, Lum PN, Leung AS, Ma CH, Kam KM, Yuen KY: Identification of Mycobacterium neoaurum isolated from a neutropenic patient with catheter-related bacteremia by 16S rRNA sequencing. J Clin Microbiol. 2000, 38: 3515-7.

Juretschko S, Timmermann G, Schmid M, Schleifer K-H, Pommerening-Röser A, Koops H-P, Wagner M: Combined molecular and conventional analysis of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrosospira-like bacteria as dominant populations. Appl Environ Microbiol. 1998, 64: 3042-3051.

Lane DJ: 16/23S rRNA sequencing. Nucleic acid techniques in bacterial systematics. Edited by: Stackebrandt E, Goodfellow M. 1991, Chichester: Wiley, 113-175.

Muyzer G, De Waal EC, Uitterlinden AG: Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol. 1993, 59: 695-700.

Hugenholtz P, Huber T: Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases. Int J Syst Evol Microbiol. 2003, 53: 289-293. 10.1099/ijs.0.02441-0.

Amann RI: In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes. Molecular Microbial Ecology Manual. Edited by: Akkermans ADL, van Elsas JD, de Bruijn FD. 1995, London: Kluwer Academic Publications

Amann RI, Binder BJ, Olson RJ, Chrisholm SW, Devereux R, Stahl D: Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol. 1990, 56: 1919-1925.

Daims H, Brühl A, Amann R, Schleifer K-H, Wagner M: The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set. Syst Appl Microbiol. 1999, 22: 434-444.

Manz W, Amann R, Ludwig W, Wagner M, Schleifer K-H: Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst Appl Microbiol. 1992, 15: 593-600.

Shetty A, Barnes R, Healy B, Groves P: A case of sepsis caused by Acidovorax. J Infect. 2005, 51: e171-2. 10.1016/j.jinf.2004.12.014.

Sintchenko V: Massilia timonae: A unusual bacterium causing wound infection following surgery. Clin Microbiol Newslett. 2000, 22: 149-151. 10.1016/S0196-4399(00)80012-4.

La Scola B, Birtles R, Mallet M, Raoult DI: Massilia timonae gen. nov., sp. nov., isolated from blood of an immunocompromised patient with cerebellar lesions. J Clin Microbiol. 1998, 36: 2847-52.

Hill KE, Davies CE, Wilson MJ, Stephens P, Lewis MA, Hall V, Brazier J, Thomas DW: Heterogeneity within the gram-positive anaerobic cocci demonstrated by analysis of 16S–23S intergenic ribosomal RNA polymorphisms. J Med Microbiol. 2002, 51: 949-57.

Perry AL, Lambert PA:Propionibacterium acnes. Lett Appl Microbiol. 2006, 42: 185-8. 10.1111/j.1472-765X.2006.01866.x.

Pan SC: Endocarditis caused by Propionibacterium acnes: an easily ignored pathogen. J Infect. 2005, 51: e229-31. 10.1016/j.jinf.2005.02.006.

La Scola B, Mallet M, Grimont P, Raoult D: Bosea eneae sp. nov., Bosea massiliensis sp. nov. and Bosea vestrisii sp. nov., isolated from hospital water supplies, and emendation of the genus Bosea. Int J Syst Evol Microbiol. 2003, 53: 15-20. 10.1099/ijs.0.02127-0.

Singh R, Stine O, Smith D, Spitznagel JJ, Labib M, Williams H: Microbial diversity of biofilms in dental unit water systems. Appl Environ Microbiol. 2003, 69: 3412-20. 10.1128/AEM.69.6.3412-3420.2003.

Soberon M, Lopez O, Morera C, Girard M, Tabche M, Miranda J: Enhanced nitrogen fixation in a rhizobium etli ntrC mutant that overproduces the Bradyrhizobium japonicum symbiotic terminal oxidase cbb3. Appl Environ Microbiol. 1999, 65: 2015-9.

Shigematsu T, Yumihara K, Ueda Y, Numaguchi M, Morimura S, Kida K: Delftia tsuruhatensis sp. nov., a terephthalate-assimilating bacterium isolated from activated sludge. Int J Syst Evol Microbiol. 2003, 53: 1479-83. 10.1099/ijs.0.02285-0.

Khan ST, Hiraishi A: Diaphorobacter nitroreducens gen nov, sp nov, a poly(3-hydroxybutyrate)-degrading denitrifying bacterium isolated from activated sludge. J Gen Appl Microbiol. 2002, 48: 299-308. 10.2323/jgam.48.299.

Wagner M, Roger AJ, Flax JL, Brusseau GA, Stahl DA: Phylogeny of dissimilatory sulfite reductase supports an early origin of sulfate respiration. J Bacteriol. 1998, 180: 2975-2982.

Post J, Aul J, White G, Wadowsky R, Zavoral T, Tabari R, Kerber B, Doyle W, Ehrlich G: PCR-based detection of bacterial DNA after antimicrobial treatment is indicative of persistent, viable bacteria in the chinchilla model of otitis media. Am J Otolaryngol. 1996, 17: 106-11. 10.1016/S0196-0709(96)90005-8.

Heininger A, Binder M, Schmidt S, Unertl K, Botzenhart K, Doring G: PCR and blood culture for detection of Escherichia coli bacteremia in rats. J Clin Microbiol. 1999, 37: 2479-2482.

Wang Y, Zhang Z, Ramanan N: The actinomycete Thermobispora bispora contains two distinct types of transriptionally active 16S rRNA genes. J Bacteriol. 1997, 179: 3270-3276.

James G, Swogger E, Wolcott R, Pulcini ED, Secor P, Sestrich J, Costerton J, Stewart P: Biofilms in chronic wounds. Wound Repair Regen. 2007, 13: 13-

Andersen A, Hill K, Stephens P, Thomas D, Jorgensen B, Krogfelt K: Bacterial profiling using skin grafting, standard culture and molecular bacteriological methods. J Wound Care. 2007, 16: 171-5.

Nichols R, Raad I: Management of bacterial complications in critically ill patients: Surgical wound and catheter-related infections. Diagn Microbiol Infect Dis. 1999, 33: 121-130. 10.1016/S0732-8893(98)00144-8.

Tenke P, Riedl C, Jones G, Williams G, Stickler D, Nagy E: Bacterial biofilm formation on urologic devices and heparin coating as preventive strategy. Int J Antimicrob Agents. 2004, 23: S67-74. 10.1016/j.ijantimicag.2003.12.007.

Fenollar F, Raoult D: Molecular diagnosis of bloodstream infections caused by non-cultivable bacteria. Int J Antimicrob Agents. 2007, 30: 7-15. 10.1016/j.ijantimicag.2007.06.024.