Use and misuse of PLFA measurements in soils

Soil Biology and Biochemistry - Tập 43 Số 8 - Trang 1621-1625 - 2011
Åsa Frostegård1, Anders Tunlid2, Erland Bååth2
1Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, P. O. Box 5003, N-1432 Ås, Norway
2Microbial Ecology, Department of Biology, Ecology Building, Lund University, SE-223 62 Lund, Sweden

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Bååth, 2003, The use of neutral lipid fatty acids to indicate the physiological conditions of soil fungi, Microbial Ecology, 45, 373, 10.1007/s00248-003-2002-y

Bååth, 1998, Microbial community-based measurements to estimate heavy metal effects in soil: the use of phospholipid fatty acid patterns and bacterial community tolerance, Ambio, 27, 58

Bárcenas-Moreno, 2009, Bacterial and fungal growth in soil heated at different temperatures to simulate a range of fire intensities, Soil Biology & Biochemistry, 41, 2517, 10.1016/j.soilbio.2009.09.010

Bligh, 1959, A rapid method of total lipid extraction and purification, Canadian Journal of Biochemistry and Physiology, 37, 911, 10.1139/o59-099

Boschker, 2002, Stable isotopes and biomarkers in microbial ecology, FEMS Microbiology Ecology, 40, 85, 10.1111/j.1574-6941.2002.tb00940.x

Díaz-Raviña, 1996, Development of metal tolerance of soil bacterial communities exposed to experimentally increased metal levels, Applied and Environmental Microbiology, 62, 2970, 10.1128/AEM.62.8.2970-2977.1996

Díaz-Raviña, 1994, Multiple heavy metal tolerance of soil bacterial communities and its measurement by a thymidine incorporation technique, Applied and Environmental Microbiology, 60, 2238, 10.1128/AEM.60.7.2238-2247.1994

Findlay, 1989, Efficacy of phospholipid analysis determining microbial biomass in sediments, Applied and Environmental Microbiology, 55, 2888, 10.1128/AEM.55.11.2888-2893.1989

Fischer, 2010, The trans/cis ratio of unsaturated fatty acids is not applicable as biomarker for environmental stress in case of long-term contaminated habitats, Applied Microbiology and Biotechnology, 87, 365, 10.1007/s00253-010-2544-0

Frostegård, 1996, The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil, Biology and Fertility of Soils, 22, 59, 10.1007/BF00384433

Frostegård, 1993, Shifts in the structure of soil microbial communities in limed forests as revealed by phospholipid fatty acid analysis, Soil Biology & Biochemistry, 25, 723, 10.1016/0038-0717(93)90113-P

Frostegård, 1991, Microbial biomass measured as total lipid phosphate in soils of different organic content, Journal of Microbiological Methods, 14, 151, 10.1016/0167-7012(91)90018-L

Frostegård, 1993, Phospholipid fatty acid composition, biomass and activity of microbial communities from two soil types experimentally exposed to different heavy metals, Applied and Environmental Microbiology, 59, 3605, 10.1128/AEM.59.11.3605-3617.1993

Frostegård, 1996, Changes in microbial community structure during long-term incubation in two soils experimentally contaminated with metals, Soil Biology & Biochemistry, 28, 55, 10.1016/0038-0717(95)00100-X

Jenkinson, 1981, Microbial biomass in soil: measurement and turnover, vol. 5, 415

Jia, 2006, Organic compounds that reach subsoil may threaten groundwater quality; effect of benzotriazole on degradation kinetics and microbial community composition, Soil Biology & Biochemistry, 38, 2543, 10.1016/j.soilbio.2006.03.010

Kaiser, 2010, Negligible contribution from roots to soil-borne phospholipid fatty acid fungal biomarkers 18: 2ω6,9 and 18:1ω9, Soil Biology & Biochemistry, 42, 1650, 10.1016/j.soilbio.2010.05.019

Klamer, 2004, Estimation of conversion factors for fungal biomass determination in compost using ergosterol and PLFA 18:2ω6,9, Soil Biology & Biochemistry, 36, 57, 10.1016/j.soilbio.2003.08.019

Lauber, 2009, Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale, Applied and Environmental Microbiology, 75, 5111, 10.1128/AEM.00335-09

Nichols, 1986, Comparison of fatty acid content and DNA homology of the filamentous gliding bacteria Vitreoscilla Flexibacter, Filibacter, Archives of Microbiology, 146, 1, 10.1007/BF00690149

Nordgren, 1983, Microfungi and microbial activity along a heavy metal gradient, Applied and Environmental Microbiology, 45, 1829, 10.1128/AEM.45.6.1829-1837.1983

Olsson, 1999, Signature fatty acids provide tools for determination of the distribution and interactions of mycorrhizal fungi in soil, FEMS Microbiology Ecology, 29, 303, 10.1111/j.1574-6941.1999.tb00621.x

Olsson, 1995, The use of phospholipid and neutral lipid fatty acids to estimate biomass of arbuscular mycorrhizal fungi in soil, Mycological Research, 99, 623, 10.1016/S0953-7562(09)80723-5

Ramsey, 2006, Choice of methods for soil microbial community analysis: PLFA maximizes power compared to CLPP and PCR-based approaches, Pedobiologia, 50, 275, 10.1016/j.pedobi.2006.03.003

Ranneklev, 2003, Use of phospholipid fatty acids to detect previous self-heating events in stored peat, Applied and Environmental Microbiology, 69, 3532, 10.1128/AEM.69.6.3532-3539.2003

Rousk, 2010, Soil bacterial and fungal communities across a pH gradient in an arable soil, ISME Journal, 4, 1340, 10.1038/ismej.2010.58

Rousk, 2007, Assessing plant-microbial competition for 33P using uptake into phospholipids, Applied Soil Ecology, 36, 233, 10.1016/j.apsoil.2007.03.004

Rousk, 2010, The microbial PLFA composition as affected by pH in an arable soil, Soil Biology & Biochemistry, 42, 516, 10.1016/j.soilbio.2009.11.026

Ruess, 2010, The fat that matters: soil food web analysis using fatty acids and their carbon stable isotope signature, Soil Biology & Biochemistry, 42, 1898, 10.1016/j.soilbio.2010.07.020

Schoug, 2008, Impact of fermentation pH and temperature on freeze-drying survival and membrane lipid composition of Lactobacillus coryniformis Si3, Journal of Industrial Microbiology and Biotechnology, 35, 175, 10.1007/s10295-007-0281-x

Sundh, 2000, Methane oxidation and phospholipid fatty acid composition in a podzolic soil profile, Soil Biology & Biochemistry, 32, 1025, 10.1016/S0038-0717(99)00220-5

Tunlid, 1989, Characterization of bacteria that suppress Rhizoctonia damping-off in bark compost media by analysis of fatty-acid biomarkers, Applied and Environmental Microbiology, 55, 1368, 10.1128/AEM.55.6.1368-1374.1989

White, 1983, Analysis of microorganisms in terms of quantity and activity in natural environments, vol. 34, 37

Zelles, 1999, Fatty acid patterns of phospholipids and lipopolysaccharides in the characterization of microbial communities in soil: a review, Biology and Fertility of Soils, 29, 111, 10.1007/s003740050533

Zelles, 1992, Signature fatty-acids in phospholipids and lipopolysaccharides as indicators of microbial biomass and community structure in agricultural soils, Soil Biology & Biochemistry, 24, 317, 10.1016/0038-0717(92)90191-Y