Use and misuse in the application of the phytoplankton functional classification: a critical review with updates

Acuña, P., I. Vila & V. H. Marín, 2008. Short-term responses of phytoplankton to nutrient enrichment and planktivorous fish predation in a temperate South American mesotrophic reservoir. Hydrobiologia 600: 131–138.

Albay, M. & R. Akçaalan, 2003. Factors influencing the phytoplankton steady state assemblages in a drinking-water reservoir (Ömerli reservoir, Istanbul). Hydrobiologia 502: 85–95.

Allende, L. & I. Izaguirre, 2003. The role of physical stability on the establishment of steady states in the phytoplankton community of two Maritime Antarctic lakes. Hydrobiologia 502: 211–224.

Alves-de-Souza, C., M. Menezes & V. Huszar, 2006. Phytoplankton composition and functional groups in a tropical humic coastal lagoon, Brazil. Acta Botanica Brasliensis 20: 701–708.

Anneville, O., S. Gammeter & D. Straile, 2005. Phosphorus decrease and climate variability: Mediators of synchrony in phytoplankton changes among European peri-alpine lakes. Freshwater Biology 50: 1731–1746.

Antenucci, J. P., A. Ghadouani, M. A. Burford & J. R. Romero, 2005. The long-term effect of artificial destratification on phytoplankton species composition in a subtropical reservoir. Freshwater Biology 50: 1081–1093.

Babanazarova, O. V. & O. A. Lyashenko, 2007. Inferring long-term changes in the physical–chemical environment of the shallow, enriched Lake Nero from statistical and functional analyses of its phytoplankton. Journal of Plankton Research 29: 747–756.

Barone, R. & L. Naselli-Flores, 2003. Distribution and seasonal dynamics of Cryptomonads in Sicilian water bodies. Hydrobiologia 502: 325–329.

Becker, V., V. L. M. Huszar, L. Naselli-Flores & J. Padisák, 2008. Phytoplankton equilibrium phases during thermal stratification in a deep subtropical water supply reservoir. Freshwater Biology 53: 952–963.

Borges, P. A. F., S. Train & L. C. Rodrigues, 2008. Spatial and temporal variation of phytoplankton in two subtropical Brazilian reservoirs. Hydrobiologia 607: 63–74.

Borics, G., G. Várbíró, I. Grigorszky, E. Krasznai, S. Szabó & K. T. Kiss, 2007. A new evaluation technique of potamo-plankton for the assessemnt of the ecological status of rivers. Large Rivers, 17. Archiv für Hydrobiologie Supplement 161: 465–486.

Bovo-Scomparin, V. M. & S. Train, 2008. Long-term variability of the phytoplankton community in an isolated floodplain lake of the Ivinhema River State Park, Brazil. Hydrobiologia 610: 331–344.

Bouvy, M., S. M. Nascimento, R. J. R. Molica & A. Ferreira, 2003. Limnological features in Tapacurá reservoir (northeast Brazil) during a severe drought. Hydrobiologia 493: 115–130.

Burford, M. A. & M. J. O’Donohue, 2006. A comparison of phytoplankton community assemblages in artificially and naturally mixed subtropical water reservoirs. Freshwater Biology 51: 2143–2153.

Callieri, C., E. Caravati, G. Morabito & A. Oggioni, 2006. The unicellular freshwater cyanobacterium Synechococcus and mixotrophic flagellates: Evidence for a functional association in an oligotrophic, subalpine lake. Freshwater Biology 51: 263–273.

Çelik, K. & T. Ongun, 2008. Spatial and temporal dynamics of the steady-state phytoplankton assemblages in a temperate shallow hypertrophic lake (Lake Manyas, Turkey). Limnology 9: 115–123.

Crossetti, L. O. & C. E. M. Bicudo, 2005. Structural and functional phytoplankton responses to nutrient impoverishment in mesocosms placed in a shallow eutrophic reservoir (Garças Pond), São Paulo, Brazil. Hydrobiologia 541: 71–85.

Crossetti, L. O. & C. E. M. Bicudo, 2008a. Phytoplankton as a monitoring tool in a tropical urban shallow reservoir (Garças Pond): The assemblage index application. Hydrobiologia 610: 161–173.

Crossetti, L. O. & C. E. M. Bicudo, 2008b. Adaptations in phytoplankton life strategies to imposed change in a shallow urban tropical eutrophic reservoir, Garças Reservoir, over 8 years. Hydrobiologia 614: 91–105.

da Silva, C. A., S. Train & L. C. Rodrigues, 2005. Phytoplankton assemblages in a Brazilian subtropical cascading reservoir system. Hydrobiologia 537: 99–109.

Devercelli, M., 2006. Phytoplankton of the middle Parana River during an anomalous hydrological period: A morphological and functional approach. Hydrobiologia 563: 465–478.

Dokulil, M. T. & K. Teubner, 2003. Steady state phytoplankton assemblages during thermal stratification in deep alpine lakes. Do they occur? Hydrobiologia 502: 65–72.

EC Parliament and Council, 2000. Directive of the European Parliament and of the Council 2000/60/EC establishing a framework for community action in the field of water policy. European Commission PE-CONS 3639/1/100 Rev 1, Luxembourg.

Fazio, A. & I. O’Farrell, 2005. Pytoplankton and water quality in a shallow lake: a response to secondary salinization (Argentina). Wetlands 25: 531–541.

Fietz, S., G. Kobanova, L. Ismets’eva & A. Nicklisch, 2005. Regional, vertical and seasonal distribution of phytoplankton and photosynthetic pigments in Lake Baikal. Journal of Plankton Research 27: 793–810.

Findlay, D. L., M. J. Paterson, L. L. Hendzel Jr. & H. J. Kling, 2005. Factors influencing Gonyostomum semen blooms in a small boreal reservoir lake. Hydrobiologia 533: 243–252.

Fonseca, B. M. & C. E. M. Bicudo, 2008. Phytoplankton seasonal variation in a shallow stratified eutrophic reservoir (Garcas Pond, Brazil). Hydrobiologia 600: 267–282.

Gurbuz, H., E. Kivrak, S. Soyupak & S. V. Yerli, 2003. Predicting dominant phytoplankton quantities in a reservoir by using neural networks. Hydrobiologia 504: 133–141.

Hajnal, É. & J. Padisák, 2008. Analysis of long-term ecological status of Lake Balaton based on the ALMOBAL phytoplankton database. Hydrobiologia 599: 227–237.

Huszar, V. L. & C. S. Reynolds, 1997. Phytoplankton periodicity and sequences of dominance in an Amazonian flood-plain lake (Lago Batata, Parã, Brazil): Responses to gradual environmental change. Hydrobiologia 346: 169–181.

Huszar, V. L. M., L. H. S. Silva, M. Marinho, P. Domingos & C. Sant’Anna, 2000. Cyanoprokaryote assemblages in eight productive tropical Brazilian waters. Hydrobiologia 424: 67–77.

Huszar, V., C. Kruk & N. Caraco, 2003. Steady state of phytoplankton assemblage of phytoplankton in four temperate lakes (NE USA). Hydrobiologia 502: 97–109.

Komárková, J. & R. Tavera, 2003. Steady state of phytoplankton assemblage in the tropical Lake Catemaco (Mexico). Hydrobiologia 502: 187–196.

Kozhov, M., 1963. Lake Baikal and its Life. Dr. W. Junk Press, The Hague.

Kruk, C., N. Mazzeo, G. Lacerot & C. S. Reynolds, 2002. Classification schemes for phytoplankton: A local validation of a functional approach to the analysis of species temporal replacement. Journal of Plankton Research 24: 901–912.

Leitão, M., S. M. Morata, S. Rodriguez & J. P. Vergon, 2003. The effect of perturbations on phytoplankton assemblages in a deep reservoir (Vouglans, France). Hydrobiologia 502: 73–83.

Lopes, M. R. M., C. E. M. Bicudo & M. C. Ferragut, 2005. Short term spatial and temporal variation of phytoplankton in a shallow tropical oligotrophic reservoir, southeast Brazil. Hydrobiologia 542: 235–247.

Marinho, M. M. & V. L. M. Huszar, 2002. Nutrient availability and physical conditions as controlling factors of phytoplankton composition and biomass in a tropical reservoir (Southeastern Brazil). Archiv für Hydrobiologie 153: 443–468.

Mazzeo, N., L. Rodríguez-Gallego, C. Kruk, M. Meerhoff, J. Gorga, G. Lacerot, F. Quintans, M. Loureiro, D. Larrea Jr. & F. García-Rodríguez, 2003. Effects of Egeria densa Planch. Beds on a shallow lake without piscivorous fish. Hydrobiologia 506–509: 591–602.

McIntire, C. D., G. L. Larson & R. E. Truitt, 2007. Seasonal and interannual variability in the taxonomic composition and production dynamics of hytoplankton assemblages in Crater Lake, Oregon. Hydrobiologia 574: 179–204.

Melo, S. & V. L. M. Huszar, 2000. Phytoplankton in an Amazonian floo-plain lake (Lago Batata, Brasil): Diel variation and species strategies. Journal of Plankton Research 22(1): 63–76.

Mischke, U. & B. Nixdorf, 2003. Equilibrium phase conditions in shallow German lakes: How Cyanoprokaryota species establish a steady state phase in late summer. Hydrobiologia 502: 123–132.

Mohamed, Z. A., 2006. First report of toxic Cylindrospermopsis raciborskii and Raphidiopsis mediterranea (Cyanoprokaryota) in Egyptian fresh waters. FEMS Microbial Ecology 59: 749–761.

Morabito, G., A. Oggioni & P. Panzani, 2003. Phytoplankton assemblage at equilibrium in large and deep subalpine lakes: A case study from Lago Maggiore (N. Italy). Hydrobiologia 502: 37–48.

Moura, A. N., M. C. Bittencourt-Oliveira, Ê. W. Dantas & J. D. Toledo Arruda Neto, 2007. Phytoplanktonic associations: A tool to understanding dominance events in a tropical Brazilian reservoir. Acta Botanica Brasiliensis 21: 641–648.

Moustaka-Gouni, M., E. Vardaka & E. Tryfon, 2007. Phytoplankton species succession in a shallow Mediterranean lake (L. Kastoria, Greece): Steady-state dominance of Limnothrix redekei, Microcystis aeruginosa and Cylindrospermopsis raciborskii. Hydrobiologia 575: 129–140.

Nabout, J. C., I. S. Nogueira & I. G. Oliveira, 2006. Phytoplankton community of floodplain lakes of the Araguaia River, Brazil, in the rainy and dry seasons. Journal of Plankton Research 28(2): 181–193.

Naselli-Flores, L. & R. Barone, 2003. Steady-state assemblages in a Mediterranean hypertrophic reservoir. The role of Microcystis ecomorphological variability in maintaining an apparent equilibrium. Hydrobiologia 502: 133–143.

Naselli-Flores, L. & R. Barone, 2005. Water-level fluctuations in Mediterranean reservoirs: Setting a dewatering threshold as a management tool to improve water quality. Hydrobiologia 548: 85–99.

Naselli-Flores, L. & R. Barone, 2007. Pluriannual morphological variability of phytoplankton in a highly productive Mediterranean reservoir (Lake Arancio, Southwestern Sicily). Hydrobiologia 578: 87–95.

Naselli-Flores, L., J. Padisák & M. Albay, 2007. Shape and size in phytoplankton ecology: do they matter? Hydrobiologia 578: 157–161.

Niesel, V. E. Hoehn, R. Sudbrack, H. Willmitzer & I. Chorus, 2007. The occurrence of the Dinophyte species Gymnodinium uberrimum and Peridinium willei in German reservoirs. Journal of Plankton Research 29: 347–357.

Nixdorf, B., U. Mischke & J. Rücker, 2003. Phytoplankton assemblages and steady state in deep and shallow eutrophic lakes—An approach to differentiate the habitat properties of Oscillatoriales. Hydrobiologia 502: 111–121.

O’Farrell, I., R. Sinistro, I. Izaguirre & F. Unrein, 2003. Do steady state assemblages occur in shallow lentic environments from wetlands? Hydrobiologia 502: 197–209.

Padisák, J. & M. Dokulil, 1994. Meroplankton dynamics in a saline, turbulent, turbid shallow lake (Neusiedlersee, Austria and Hungary). Hydrobiologia 289: 23–42.

Padisák, J. & C. S. Reynolds, 1998. Selection of phytoplankton associations in Lake Balaton, Hungary, in response to eutrophicatioon and restoration measures, with special reference to cyanoprokaryotes. Hydrobiologia 384: 41–53.

Padisák, J., L. Krienitz, R. Koschel & J. Nedoma, 1997. Deep layer picoplankton maximum in the oligotrophic Lake Stechlin, Germany: Origin, activity, development and erosion. European Journal of Phycology 32: 403–416.

Padisák, J., F. A. R. Barbosa, R. Koschel & L. Krienitz, 2003a. Deep layer cyanoprokaryota maxima are constitutional features of lakes: Examples from temperate and tropical regions. Archiv für Hydrobiologie, Special Issues, Advances in Limnology 58: 175–199.

Padisák, J., G. Borics, G. Fehér, I. Grigorszky, I. Oldal, A. Schmidt & Z. Zámbóné-Doma, 2003b. Dominant species, functional assemblages and frequency of equilibrium phases in late summer phytoplankton assemblages in Hungarian small shallow lakes. Hydrobiologia 502: 157–168.

Padisák, J., I. Grigorszky, G. Borics & É. Soróczki-Pintér, 2006. Use of phytoplankton assemblages for monitoring ecological status of lakes within the Water Framework Directive: The assemblage index. Hydrobiologia 553: 1–14.

Pinto, M. P., L. Allende & I. O’Farrell, 2007. Influence of free-floating plants on the structure of a natural phytoplankton assemblage: An experimental approach. Journal of Plankton Research 29: 47–56.

Reynolds, C. S., V. Huszar, C. Kruk, L. Naselli-Flores & S. Melo, 2002. Towards a functional classification of the freshwater phytoplankton. Journal of Plankton Research 24: 417–428.

Romo, S. & M. J. Villena, 2005. Phytoplankton strategies and diversity under different nutrient levels and planktivorous fish densities in a shallow Mediterranean lake. Journal of Plankton Research 27: 1273–1286.

Salmaso, N., 2002. Ecological patterns of phytoplankton assemblages in Lake Garda: Seasonal, spatial and historical features. Journal of Limnology 61: 95–115.

Salmaso, N. & J. Padisák, 2007. Morpho-functional groups and phytoplankton development in two deep lakes (Lake Garda, Italy and Lake Stechlin, Germany). Hydrobiologia 578: 97–112.

Sarmento, H. & J.-P. Descy, 2008. Use of marker pigments and functional groups for assessing the status of phytoplankton assemblages in lakes. Journal of Applied Phycology. doi: 10.1007/s10811-007-9294-0 .

Sarmento, H., M. Isumbisho & J.-P. Descy, 2006. Phytoplankton ecology of Lake Kivu (east Africa). Journal of Plankton Research 28: 815–829.

Scheffler, W. & J. Padisák, 2000. Stephanocostis chantaicus (Bacillariophyceae): Morphology and population dynamics of a rare centric diatom growing in winter under ice in the oligotrophic Lake Stechlin, Germany. Archiv für Hydrobiologie 98/Algological Studies 133: 49–69.

Soares, M. C. S., V. L. M. Huszar & F. Roland, 2007. Phytoplankton dynamics in two tropical rivers with different degrees of human impact (Southeast Brazil). River Research and Applications 23: 698–714.

Souza, M. B. G., C. F. A. Barros, F. A. R. Barbosa, É. Hajnal & J. Padisák, 2008. The role of atelomixis in phytoplankton assemblages’ replacement in Dom Helvécio Lake, South-East Brazil. Hidrobiologa 607: 211–224.

Sthapit, E., A. Ochs, C. Paul & V. Zimba, 2008. Spatial and temporal variation in phytoplankton community structure in a southeastern U.S. reservoir determined by HPLC and light microscopy. Hydrobiologia 600: 215–228.

Stoyneva, M. P., 2003. Steady-state phytoplankton assemblages in shallow Bulgarian wetlands. Hydrobiologia 502: 169–176.

Stoyneva, M. P., J.-P. Descy & W. Vyverman, 2007. Green algae in Lake Tanganyika: Is morphological variation a response to seasonal changes? Hydrobiologia 578: 7–16.

Tilman, P., 1982. Resource Competition and Community Structure. Princeton University Press, Princeton.

Townsend, S., 2006. Hydraulic phases, persistent stratification, and phytoplankton in a tropical floodplain lake (Mary River, Northern Australia). Hydrobiologia 556: 163–179.

Vardaka, E., M. Moustaka-Gouni, C. M. Cook & T. Lanaras, 2005. Cyanobacterial blooms and water quality in Greek waterbodies. Journal of Applied Phycology 17: 391–401.

Vörös, L., P. Gulyás & P. F. Németh, 1991. Occurrence, dynamics and production of picoplankton in Hungarian shallow lakes. Internationale Revue der gesamten Hydrobiologie 76: 617–629.

Wilhelm, S. & R. Adrian, 2008. Impact of summer warming on the thermal characteristics of a polymictic lake and consequences for oxygen, nutrients and phytoplankton. Freshwater Biology 53: 226–237.

Willén, E., 2003. Dominance patterns of planktonic algae in Swedish forest lakes. Hydrobiologia 502: 315–324.

Yéprémian, C., M. F. Gugger, E. Briand, C. Arnaud, C. Berger, C. Quiblier & C. Bernard, 2007. Microcystin ecotypes in a perennial Planktothrix agardhii bloom. Water Research 41: 4446–4456.

Zhang, X., P. Xie, F. Z. Chen, S. X. Li & J. H., 2007. Driving forces shaping phytoplankton assemblages in two subtropical plateau lakes with contrasting trophic status. Freshwater Biology 52: 1463–1475.