UPARSE: highly accurate OTU sequences from microbial amplicon reads

Nature Methods - Tập 10 Số 10 - Trang 996-998 - 2013
Robert C. Edgar1
1Independent Investigator, Tiburon, California, USA.

Tóm tắt

Từ khóa


Tài liệu tham khảo

Human Microbiome Project Consortium. Nature 486, 207–214 (2012).

Lundberg, D.S. et al. Nature 488, 86–90 (2012).

Bokulich, N.A. et al. Nat. Methods 10, 57–59 (2013).

Quince, C. et al. Nat. Methods 6, 639–641 (2009).

Reeder, J. & Knight, R. Nat. Methods 7, 668–669 (2010).

Quince, C., Lanzen, A., Davenport, R.J. & Turnbaugh, P.J. BMC Bioinformatics 12, 38 (2011).

Edgar, R.C., Haas, B.J., Clemente, J.C., Quince, C. & Knight, R. Bioinformatics 27, 2194–2200 (2011).

Huse, S.M., Welch, D.M., Morrison, H.G. & Sogin, M.L. Environ. Microbiol. 12, 1889–1898 (2010).

Schloss, P.D., Gevers, D. & Westcott, S.L. PLoS ONE 6, e27310 (2011).

Caporaso, J.G. et al. Nat. Methods 7, 335–336 (2010).

Sneath, P.H.A. & Sokal, R.R. Numerical Taxonomy (W.H. Freeman, 1973).

Haas, B.J. et al. Genome Res. 21, 494–504 (2011).

Human Microbiome Project Consortium. Nature 486, 215–221 (2012).

Ihrmark, K. et al. FEMS Microbiol. Ecol. 82, 666–677 (2012).

DeSantis, T.Z. et al. Appl. Environ. Microbiol. 72, 5069–5072 (2006).

Masella, A.P., Bartram, A.K., Truszkowski, J.M., Brown, D.G. & Neufeld, J.D. BMC Bioinformatics 13, 31 (2012).

Sayers, E.W. et al. Nucleic Acids Res. 40, D13–D25 (2012).