Triacylglycerol accumulation and oxidative stress in Rhodococcus species: differential effects of pro-oxidants on lipid metabolism

Alvarez HM, Steinbüchel A (2010) Physiology, biochemistry and molecular biology of triacylglycerol accumulation by Rhodococcus. In: Alvarez HM (ed) Biology of Rhodococcus. Microbiology monographs series. Springer Verlag, Heidelberg, pp 263–290 Alvarez HM, Mayer F, Fabritius D, Steinbüchel A (1996) Formation of intracytoplasmic lipid inclusion by Rhodococcus opacus PD630. Arch Microbiol 165:377–386 Alvarez HM, Kalscheuer R, Steinbüchel A (1997) Accumulation of storage lipids in species of Rhodococcus and Nocardia and effect of inhibitors and polyethylene glycol. Fett/Lipid 99:239–246 Alvarez HM, Kalscheuer R, Steinbüchel A (2000) Accumulation and mobilization of storage lipids by Rhodococcus opacus PD630 and Rhodococcus ruber NCIMB 40126. App Microbiol and Biotechnol 54:218–223 Alvarez HM, Silva RA, Cesari AC, Zamit AL, Peressutti SR, Reichelt R, Keller U, Malkus U, Rasch C, Maskow T, Mayer F, Steinbüchel A (2004) Physiological and morphological responses of the soil bacterium Rhodococcus opacus strain PD630 to water stress. FEMS Microbiol Ecol 50:75–86 Beauchamp C, Fridovich I (1971) Superoxide dismutase: improved assays and an assay applicable to acrylamide gels. Anal Biochem 44:276–287 Bequer Urbano S, Albarracín VH, Ordoñez OF, Farías ME, Alvarez HM (2013) Lipid storage in high-altitude Andean Lakes extremophiles and its mobilization under stress conditions in Rhodococcus sp. A5, a UV-resistant actinobacterium. Extremophiles 17:217–227 Bhatnagar A, Bhatnagar M (2005) Microbial diversity in desert ecosystem. Curr Sci 89:91–100 Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein–dye binding. Anal Biochem 72:248–254 Brumaghim JL, Li Y, Henle E, Linn S (2003) Effects of hydrogen peroxide upon nicotinamide nucleotide metabolism in Escherichia coli: changes in enzyme levels and nicotinamide nucleotide pools and studies of the oxidation of NAD(P)H by Fe(III). J Biol Chem 278:42495–42504 Burchell MJ, Mann JR, Bunch AW (2004) Survival of bacteria and spores under extreme shock pressure. Mon Not R Astron Soc 352:1273–1278 Clement M, Watson S, Foster S (1999) Characterization of the major superoxide dismutase of Staphylococcus aureus and its role in starvation survival, stress resistance, and pathogenicity. J Bacteriol 181:3898–3903 Connon S, Lester E, Shafaat H, Obenhuber D, Ponce A (2007) Bacterial diversity in hyperarid Atacama Desert soils. J Geophys Res 112:1–9 Contreras-Porcia L, Thomas D, Flores V, Correa JA (2011) Tolerance to oxidative stress induced by desiccation in Porphya columbina (Bangiales, Rhodophyta). J Exp Bot 62:1815–1829 Di Capua C, Bortolotti A, Farías ME, Cortez N (2011) Ultraviolet-resistant Acinetobacter sp. isolates from Andean Wetlands display high catalase activity. FEMS Microbiol Lett 317:181–189 Donahue JL, Okpodu CM, Cramer CL, Grabau EA, Alscher RG (1997) Response of antioxidants to paraquat in pea leaves (relationships to resistance). Plant Physiol 113:249–257 França MB, Panek AD, Eleutherio ECA (2005) The role of cytoplasmic catalase in dehydration tolerance of Saccharomyces cerevisiae. Cell Stress Chaperones 17:167–170 França MB, Panek AD, Eleutherio ECA (2007) Oxidative stress and its effects during dehydration. Comp Biochem Physiol A: Mol Integr Physiol 146:621–631 Ghosal D, Omelchenko MV, Gaidamakova EK, Matrosova VY, Vasilenko A, Venkateswaran A, Zhai M, Kostandarithes HM, Brim H, Makarova KS, Wackett LP, Fredickson JK, Daly MJ (2005) How radiation kills cells: survival of Deinococcus radiocurans and Shewanella oneidensis under oxidative stress. FEMS Microbiol Rev 29:361–375 Hassan HM, Fridovich I (1978) Superoxide radical and the oxygen enhancement of the toxicity of paraquat in Escherichia coli. J Biol Chem 253:8143–8148 Hassan HM, Fridovich I (1979) Paraquat and Escherichia coli Mechanism of production of extracellular superoxide radical. J Biol Chem 254:10846–10852 Heald SC, Brandão PF, Hardicre R, Bull AT (2001) Physiology, biochemistry and taxonomy of deep-sea nitrile metabolising Rhodococcus strains. Antonie Van Leeuwenhoek 80:169–183 Hernández MA, Alvarez HM (2010) Glycogen formation by Rhodococcus species and the effect of inhibition of lipid biosynthesis on glycogen accumulation in Rhodococcus opacus PD630. FEMS Microbiol Lett 312:93–99 Hernández MA, Mohn WW, Martínez E, Rost E, Alvarez AF, Alvarez HM (2008) Biosynthesis of storage compounds by Rhodococcus jostii RHA1 and global identification of genes involved in their metabolism. BMC Genom 12(9):600 Imlay J (2003) Pathways of oxidative damage. Annu Rev Microbiol 57:395–418 Krapp AR, Humbert MV, Carrillo N (2011) The soxRS response of Escherichia coli can be induced in the absence of oxidative stress and oxygen by modulation of NADPH content. Microbiol 157:957–965 LeBlanc JC, Gonçalves ER, Mohn WW (2008) Global response to desiccation stress in the soil actinomycete Rhodococcus jostii RHA1. Appl Environ Microbiol 9:2627–2636 Liebler DC, McClure TD (1996) Antioxidant reactions of beta-carotene: identification of carotenoid-radical adducts. Chem Res Toxicol 9:8–11 Low KL, Rao PS, Shui G, Bendt AK, Pethe K, Dick T, Wenk MR (2009) Triacylglycerol utilization is required for regrowth of in vitro hypoxic nonreplicating Mycobacterium bovis bacillus Calmette-Guerin. J Bacteriol 191:5037–5043 Luz AP, Pellizari VH, Whyte LG, Greer CW (2004) A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil. Can J Microbiol 50:323–333 Mailloux RJ, Lemire J, Appanna VD (2011) Metabolic networks to combat oxidative stress in Pseudomonas fluorescens. Antonie Van Leeuwenhoek 99:433–442 Masai E, Yamada A, Healy JM, Hatta T, Kimbara K, Fukuda M, Yano K (1995) Characterization of biphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1. Appl Environ Microbiol 61:2079–2085 Mishra S, Imlay J (2012) Why do bacteria use so many enzymes to scavenge hydrogen peroxide? Arch Biochem Biophys 515:145–160 Okoro CK, Brown R, Jones AL, Andrews BA, Asenjo JA, Goodefellow M, Bull AT (2009) Diversity of culturable actinomycetes in hyper arid soils of the Atacama Desert, Chile. Antonie Van Leeuwenhoek 95:121–133 Ordoñez OF, Dib JR, Flores MR, Farías ME (2009) Extremophile culture collection from Andean Lakes. Extreme pristine environments that host a wide diversity of microorganisms with tolerance to UV radiation. Microbial Ecol 58:461–473 Osawa A, Kasahara A, Mastuoka S, Gassel S, Sandmann G, Shindo K (2011) Isolation of a novel carotenoids, OH-chlorobactene glucosidase hexadecanoate and related rare carotenoids from Rhodococcus sp. CIP and their antioxidative activities. Biosci Biotechnol Biochem 75:2142–2147 Peng F, Wang Y, Sun F, Liu Z, Lai Q, Shao Z (2008) A novel lipopeptide produced by a Pacific Ocean deep-sea bacterium, Rhodococcus sp. TW53. J Appl Microbiol 105:698–705 Pereira E, Panek AD, Eleutherio ECA (2003) Protection against oxidation during dehydration of yeast. Cell Stress Chaperones 8:120–124 Peressutti S, Alvarez HM, Pucci OH (2003) Dynamics of hydrocarbon-degrading bacteriocenosis of an experimental oil pollution in Patagonian soil. Int Biodeterior Biodegradation 52:21–30 Scandalios JG (1968) Genetic control of multiple molecular forms of catalase in maize. Ann NY Acad Sci 151:274–293 Schlegel HG, Kaltwasser H, Gottschalk G (1961) Ein Submersverfahren zur Kultur wasserstoffoxidierender Bakterien: Wachstumsphysiologische Untersuchungen. Arch Mikrobiol 38:209–222 Silva RA, Grossi V, Olivera NL, Alvarez HM (2010) Characterization of indigenous Rhodococcus sp. 602, a strain able to accumulate triacylglycerides from naphthyl compounds under nitrogen-starved conditions. Res Microbiol 161:198–207 Singh R, Lemire J, Mailloux RJ, Appanna VD (2008) A novel strategy involved anti-oxidative defense: the conversion of NADH into NADPH by a metabolic network. PLoS ONE 3:1–7 Sutcliffe IC, Brown AK, Dover LG (2011) The rhodococcal cell envelope: composition, organization and biosynthesis. In: Alvarez HM (ed) Biology of Rhodococcus, microbiology monographs series. Springer, Berlin, pp 263–290 Tian B, Xu Z, Sun Z, Li J, Hua Y (2007) Evaluation of the antioxidant effects of carotenoids from Deinococcus radiodurans through targeted mutagenesis, chemiluminescence and DNA damage analyses. Biochim Biophys Acta 1770:902–911 Whyte LG, Slagman SJ, Pietrantonio F, Bourbonnière L, Koval SF, Lawrence JR, Inniss WE, Greer CW (1999) Physiological adaptations involved in alkane assimilation at a low temperature by Rhodococcus sp. strain Q15. Appl Environ Microbiol 65:2961–2968