Trends in biomedical informatics: automated topic analysis of JAMIA articles

Maheswarappa, 1997, Bibliometrics: an overview, Bibliometr Stud., 1, 1

Kim, 2011, Trends in biomedical informatics: most cited topics from recent years, JAMIA., 18, i166

Jiang, 2013, Recent trends in biomedical informatics: a study based on JAMIA articles, JAMIA., 20, e198

Kim, Trends in publication of nursing informatics research, AMIA Annual Symposium Proceedings, 805

Ho, 2014, Limestone: high-throughput candidate phenotype generation via tensor factorization, J Biomed Inform., 52, 199, 10.1016/j.jbi.2014.07.001

Wang, 2015, Rubik: knowledge guided tensor factorization and completion for health data analytics, 21st ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD-2015), 10.1145/2783258.2783395

Bryant, 1995, Principal-Components Analysis and Exploratory and Confirmatory Factor Analysis

Lee, 1999, Learning the parts of objects by non-negative matrix factorization, Nature., 401, 788, 10.1038/44565

Luo, 2015, Subgraph augmented non-negative tensor factorization (SANTF) for modeling clinical narrative text. JAMIA, 1009

Web of Science, 1009

Schedlbauer, 2009, What evidence supports the use of computerized alerts and prompts to improve clinicians’ prescribing behavior?, JAMIA, 16, 531

Shea, 2009, A randomized trial comparing telemedicine case management with usual care in older, ethnically diverse, medically underserved patients with diabetes mellitus, JAMIA., 16, 446

Reckmann, 2009, Does computerized provider order entry reduce prescribing errors for hospital inpatients? A systematic review, JAMIA., 16, 613

Paterno, 2009, Tiering drug–drug interaction alerts by severity increases compliance rates, JAMIA., 16, 40

Kaplan, 2009, Health IT success and failure: recommendations from literature and an AMIA workshop, JAMIA., 16, 291

Wang, 2009, Active computerized pharmacovigilance using natural language processing, statistics, and electronic health records: a feasibility study, JAMIA., 16, 328

Roblin, 2009, Disparities in use of a personal health record in a managed care organization, JAMIA., 16, 683

Laurent, 2009, Seeking health information online: does Wikipedia matter?, JAMIA, 16, 471

Niazkhani, 2009, The impact of computerized provider order entry systems on inpatient clinical workflow: a literature review, JAMIA., 16, 539

Wright, 2009, Clinical decision support capabilities of commercially-available clinical information systems, JAMIA., 16, 637

Savova, 2010, Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications, JAMIA., 17, 507

Aronson, 2010, An overview of MetaMap: historical perspective and recent advances, JAMIA., 17, 229

Murphy, 2010, Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2), JAMIA, 17, 124

Karsh, 2010, Health information technology: fallacies and sober realities, JAMIA., 17, 617

Uzuner, 2010, Extracting medication information from clinical text, JAMIA., 17, 514

Xu, 2010, MedEx: a medication information extraction system for clinical narratives, JAMIA., 17, 19

Kullo, 2010, Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease, JAMIA., 17, 568

Benitez, 2010, Evaluating re-identification risks with respect to the HIPAA privacy rule, JAMIA., 17, 169

Moxey, 2010, Computerized clinical decision support for prescribing: provision does not guarantee uptake, JAMIA., 17, 25

Vest, 2010, Health information exchange: persistent challenges and new strategies, JAMIA., 17, 288

Uzuner, 2011, 2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text, JAMIA., 18, 552

Jaspers, 2011, Effects of clinical decision-support systems on practitioner performance and patient outcomes: a synthesis of high-quality systematic review findings, JAMIA., 18, 327

Archer, 2011, Personal health records: a scoping review, JAMIA., 18, 515

Nadkarni, 2011, Natural language processing: an introduction, JAMIA., 18, 544

Rosenbloom, 2011, Data from clinical notes: a perspective on the tension between structure and flexible documentation, JAMIA., 18, 181

Sarkar, 2011, Social disparities in internet patient portal use in diabetes: evidence that the digital divide extends beyond access, JAMIA., 18, 318

Vest, 2011, Factors motivating and affecting health information exchange usage, JAMIA., 18, 143

Bloomrosen, 2011, Anticipating and addressing the unintended consequences of health IT and policy: a report from the AMIA 2009 Health Policy Meeting, JAMIA., 18, 82

Kuperman, 2011, Health-information exchange: why are we doing it, and what are we doing?, JAMIA, 18, 678

Rao, 2011, Electronic health records in small physician practices: availability, use, and perceived benefits, JAMIA., 18, 271

Kho, 2012, Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study, JAMIA., 19, 212

Carroll, 2012, Portability of an algorithm to identify rheumatoid arthritis in electronic health records, JAMIA., 19, e162

Vervloet, 2012, The effectiveness of interventions using electronic reminders to improve adherence to chronic medication: a systematic review of the literature, JAMIA., 19, 696

Musen, 2012, The national center for biomedical ontology, JAMIA., 19, 190

Frisse, 2012, The financial impact of health information exchange on emergency department care, JAMIA., 19, 328

Overhage, 2012, Validation of a common data model for active safety surveillance research, JAMIA., 19, 54

Tatonetti, 2012, A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports, JAMIA., 19, 79

Estabrooks, 2012, Harmonized patient-reported data elements in the electronic health record: supporting meaningful use by primary care action on health behaviors and key psychosocial factors, JAMIA., 19, 575

Parsons, 2012, Validity of electronic health record-derived quality measurement for performance monitoring, JAMIA., 19, 604

Kohane, 2012, A translational engine at the national scale: informatics for integrating biology and the bedside, JAMIA, 19, 181

Hripcsak, 2013, Next-generation phenotyping of electronic health records, JAMIA., 20, 117

Weiskopf, 2013, Methods and dimensions of electronic health record data quality assessment: enabling reuse for clinical research, JAMIA., 20, 144

White, 2013, Web-scale pharmacovigilance: listening to signals from the crowd, JAMIA., 20, 404

Radley, 2013, Reduction in medication errors in hospitals due to adoption of computerized provider order entry systems, JAMIA., 20, 470

Middleton, 2013, Enhancing patient safety and quality of care by improving the usability of electronic health record systems: recommendations from AMIA, JAMIA., 20, e2

Newton, 2013, Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network, JAMIA., 20, e147

Wen, 2013, An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer, JAMIA., 20, 659

Harpaz, 2013, Combing signals from spontaneous reports and electronic health records for detection of adverse drug reactions, JAMIA., 20, 413

Natter, 2013, An i2b2-based, generalizable, open source, self-scaling chronic disease registry, JAMIA., 20, 172

Phansalkar, 2013, Drug—drug interactions that should be non-interruptive in order to reduce alert fatigue in electronic health records, JAMIA., 20, 489

Bell, 2014, Development and use of active clinical decision support for preemptive pharmacogenomics, JAMIA., 21, e93

Fleurence, 2014, Launching PCORnet, a national patient-centered clinical research network, JAMIA., 21, 578

Abraham, 2014, A systematic review of the literature on the evaluation of handoff tools: implications for research and practice, JAMIA., 21, 154

Tate, 2014, Exploiting the potential of large databases of electronic health records for research using rapid search algorithms and an intuitive query interface, JAMIA., 21, 292

Turvey, 2014, Blue Button use by patients to access and share health record information using the Department of Veterans Affairs’ online patient portal, JAMIA., 21, 657

Nanji, 2014, Overrides of medication-related clinical decision support alerts in outpatients, JAMIA., 21, 487

Agaku, 2014, Concern about security and privacy, and perceived control over collection and use of health information are related to withholding of health information from healthcare providers, JAMIA., 21, 374

Krist, 2014, Electronic health record functionality needed to better support primary care, JAMIA., 21, 764

Gupta, 2014, Examining clinical decision support integrity: is clinician self-reported data entry accurate?, JAMIA, 21, 23

Zai, 2014, Applying operations research to optimize a novel population management system for cancer screening, JAMIA., 21, e129

Azcárate, 2013, Improving image retrieval effectiveness via query expansion using MeSH hierarchical structure, JAMIA., 20, 1014

Liu, 2013, Automatic glaucoma diagnosis through medical imaging informatics, JAMIA., 20, 1021

Arnold, 2013, Imaging informatics for consumer health: towards a radiology patient portal, JAMIA., 20, 1028

Yang, 2013, Multiscale segmentation of the skull in MR images for MRI-based attenuation correction of combined MR/PET, JAMIA., 20, 1037

Bui, 2013, Imaging-based observational databases for clinical problem solving: the role of informatics, JAMIA., 20, 1053

Bourgeat, 2013, MilxXplore: a web-based system to explore large imaging datasets, JAMIA., 20, 1046

Golden, 2013, Dynamic contrast-enhanced MRI-based biomarkers of therapeutic response in triple-negative breast cancer, JAMIA., 20, 1059

Tourassi, 2013, Investigating the link between radiologists’ gaze, diagnostic decision, and image content, JAMIA., 20, 1067

Chen, 2013, Ontology-guided organ detection to retrieve web images of disease manifestation: towards the construction of a consumer-based health image library, JAMIA., 20, 1076

Neubert, 2013, Three-dimensional morphological and signal intensity features for detection of intervertebral disc degeneration from magnetic resonance images, JAMIA., 20, 1082

Gutman, 2013, Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data, JAMIA., 20, 1091

Kothari, 2013, Pathology imaging informatics for quantitative analysis of whole-slide images, JAMIA., 20, 1099

Lei, 2014, A comprehensive study of named entity recognition in Chinese clinical text, JAMIA., 21, 808

Lee, 2014, A multi-part matching strategy for mapping LOINC with laboratory terminologies, JAMIA., 21, 792

Abhyankar, 2014, Combining structured and unstructured data to identify a cohort of ICU patients who received dialysis, JAMIA., 21, 801

Li, 2014, Phenotyping for patient safety: algorithm development for electronic health record based automated adverse event and medical error detection in neonatal intensive care, JAMIA., 21, 776

Ye, 2014, Influenza detection from emergency department reports using natural language processing and Bayesian network classifiers, JAMIA., 21, 815

Luo, 2014, Automatic lymphoma classification with sentence subgraph mining from pathology reports, JAMIA., 21, 824

Gobbel, 2014, Assisted annotation of medical free text using RapTAT, JAMIA., 21, 833

Chasin, 2014, Word sense disambiguation in the clinical domain: a comparison of knowledge-rich and knowledge-poor unsupervised methods, JAMIA., 21, 842

Bui, 2014, Learning regular expressions for clinical text classification, JAMIA., 21, 850

Sohn, 2014, MedXN: an open source medication extraction and normalization tool for clinical text, JAMIA., 21, 858

Connolly, 2014, Assessing the similarity of surface linguistic features related to epilepsy across pediatric hospitals, JAMIA., 21, 866

Bobo, 2014, An electronic health record driven algorithm to identify incident antidepressant medication users, JAMIA., 21, 785

Marafino, 2014, N-gram support vector machines for scalable procedure and diagnosis classification, with applications to clinical free text data from the intensive care unit, JAMIA., 21, 871

Campbell, 2014, Semantic analysis of SNOMED CT for a post-coordinated database of histopathology findings, JAMIA., 21, 885

Wu, 2014, Patient-level temporal aggregation for text-based asthma status ascertainment, JAMIA., 21, 876

Nguyen, 2014, Supervised machine learning and active learning in classification of radiology reports, JAMIA., 21, 893

Gupta, 2014, Induced lexico-syntactic patterns improve information extraction from online medical forums, JAMIA., 21, 902

Waitman, 2014, The Greater Plains Collaborative: a PCORnet Clinical Research Data Network, JAMIA., 21, 637

Ohno-Machado, 2014, pSCANNER: patient-centered Scalable National Network for Effectiveness Research, JAMIA., 21, 621

Mandl, 2014, Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS): Architecture, JAMIA., 21, 615

Khurshid, 2014, Louisiana Clinical Data Research Network: establishing an infrastructure for efficient conduct of clinical research, JAMIA., 21, 612

Kho, 2014, CAPriCORN: Chicago Area Patient-Centered Outcomes Research Network, JAMIA., 21, 607

Forrest, 2014, PEDSnet: a National Pediatric Learning Health System, JAMIA, 21, 602

McGlynn, 2014, Developing a data infrastructure for a learning health system: the PORTAL network, JAMIA., 21, 596

Kaushal, 2014, Changing the research landscape: the New York City Clinical Data Research Network, JAMIA., 21, 587

DeVoe, 2014, The ADVANCE network: accelerating data value across a national community health center network, JAMIA., 21, 591

Daugherty, 2014, Patient-powered research networks: building capacity for conducting patient-centered clinical outcomes research, JAMIA., 21, 583

Rosenbloom, 2014, The mid-South clinical data research network, JAMIA., 21, 627

Amin, 2014, PaTH: towards a learning health system in the Mid-Atlantic region, JAMIA., 21, 633

HITECH Act

Meaningful Use initiatives

Yu, 2015, Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources, JAMIA, 22, 993

Shivade, 2014, A review of approaches to identifying patient phenotype cohorts using electronic health records, JAMIA., 21, 221

Overby, 2013, A collaborative approach to developing an electronic health record phenotyping algorithm for drug-induced liver injury, JAMIA., 20, e243

Liu, 2012, Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs, JAMIA., 19, e28

i2b2, Informatics for Integrating Biology and the Bedside

McCarty, 2011, The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies, BMC Med Genomics, 4, 1, 10.1186/1755-8794-4-13

Meeker, 2015, A System to Build Distributed Multivariate Models and Manage Disparate Data Sharing Policies: Implementation in the Scalable National Network for Effectiveness Research, JAMIA, 10.1093/jamia/ocv017

Schilling, 2013, Scalable Architecture for Federated Translational Inquiries Network (SAFTINet) Technology Infrastructure for a Distributed Data Network, eGEMs, 1, 1, 10.13063/2327-9214.1027

Seglen, 1997, Why the impact factor of journals should not be used for evaluating research, BMJ, 314, 497, 10.1136/bmj.314.7079.497

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