TreeVis: A MATLAB-based tool for tree visualization
Tài liệu tham khảo
Xu, 2002, Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees, Bioinformatics, 18, 536, 10.1093/bioinformatics/18.4.536
Park, 2009, Network-based inference of cancer progression from microarray data, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6, 200, 10.1109/TCBB.2008.126
Qiu, 2011, Discovering biological progression underlying microarray samples, PLoS Computational Biology, 7, e1001123, 10.1371/journal.pcbi.1001123
Qiu, 2011, Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE, Nature Biotechnology, 29, 886, 10.1038/nbt.1991
Bendall, 2011, Single cell mass cytometry of differential immune and drug responses across the human hematopoietic continuum, Science, 332, 687, 10.1126/science.1198704
Qiu, 2012, Inferring phenotypic properties from single-cell characteristics, PLoS One, 7, e37038, 10.1371/journal.pone.0037038
Shannon, 2003, Cytoscape: a software environment for integrated models of biomolecular interaction networks, Genome Research, 13, 2498, 10.1101/gr.1239303
Cox, 2000
Harel, 2004, Graph drawing by high-dimensional embedding, Journal of Graph Algorithms and Applications, 8, 195, 10.7155/jgaa.00089
Fruchterman, 1991, Graph drawing by force-directed placement, Software: Practice and Experience, 21, 1129, 10.1002/spe.4380211102
Ellson, 2004, Graphviz and dynagraph – static and dynamic graph drawing tools
Himsolt, 2000, Graphlet: design and implementation of a graph editor, Software: Practice and Experience, 30, 1303, 10.1002/1097-024X(200009)30:11<1303::AID-SPE341>3.0.CO;2-3
Qiu, 2012, Identification of markers associated with global changes in DNA methylation regulation in cancers, BMC Bioinformatics, 13, S7, 10.1186/1471-2105-13-S13-S7