Translocation dynamics of a semiflexible chain under a bias: Comparison with tension propagation theory

Polymer Science Series C - Tập 55 Số 1 - Trang 60-69 - 2013
Aniket Bhattacharya1
1Department of Physics, University of Central Florida, Orlando, Florida, 32816-2385, USA

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M. Muthukumar, Polymer Translocation (CRC, Boca Raton, 2011).

A. Milchev, J. Phys.: Condens. Matter 23, 103101 (2011).

B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson, Molecular Biology of the Cell (Garland, New York, 1994).

J. J. Kasianowitch, E. Brandin, D. Branton, and D. Deamer, Proc. Natl. Acad. Sci. U. S. A. 93, 13770 (1996).

J. L. Li, M. Gershow, D. Stein, E. Brandin, and J. A. Golovchenko, Nat. Mater. 2, 611 (2003).

A. J. Storm, J. H. Chen, X. S. Ling, H. W. Zandbergen, and C. Dekker, Nat. Mater. 2, 537 (2003).

A. J. Storm, C. Storm, J. Chen, H. Zandbergen, J.-F. Joanny, and C. Dekker, Nano Lett. 5, 1193 (2005).

A. Meller, L. Nivon, E. Brandin, J. Golovchenko, and D. Branton, Proc. Natl. Acad. Sci. U. S. A. 97, 1097 (2000)

A. Meller and D. Branton, Electrophoresis 23, 2583 (2002).

K. Luo, T. Ala-Nissila, S.-C. Ying, and A. Bhattacharya, J. Chem. Phys. 1262, 145101 (2006).

K. Luo, T. Ala-Nissila, S.-C. Ying, and A. Bhattacharya, Phys. Rev. Lett. 99, 148102 (2007).

K. Luo, T. Ala-Nissila, S.-C. Ying, and A. Bhattacharya, Phys. Rev. Lett. 100, 058101 (2008).

Press Release by Oxford Nanopore Technologies. http://www.nanoporetech.com/news/press-releases/view/39 . Cited Feb. 17, 2012.

W. Sung and P. J. Park, Phys. Rev. Lett. 77, 783 (1996).

M. Muthukumar, J. Chem. Phys. 111, 10371 (1999).

D. K. Lubensky and D. Nelson, Biophys. J. 77, 1824 (1999).

J. Chuang, Y. Kantor, and M. Kardar, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 65, 011802 (2001).

Y. Kantor and M. Kardar, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 69, 021806 (2004).

J. L. A. Dubbeldam, A. Milchev, V. G. Rostiashvili, and T. Vilgis, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 76, 010801(R) (2007).

J. L. A. Dubbeldam, A. Milchev, V. G. Rostiashvili, and T. Vilgis, Europhys. Lett. 79, 18002 (2007).

J. K. Wolterink, G. T. Barkema, and D. Panja, Phys. Rev. Lett. 96, 208301 (2006).

D. Panja, G. T. Barkema, and R. C. Ball, J. Phys.: Condens. Matter 19, 432202 (2007).

D. Panja, G. T. Barkema, and R. C. Ball, J. Phys.: Condens. Matter 20, 075101 (2008).

H. Vocks, D. Panja, G. T. Barkema, and R. C. Ball, J. Phys.: Condens. Matter 20, 095224 (2008).

T. Sakaue, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 76, 021803 (2007).

T. Sakaue, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 81, 041808 (2010).

T. Saito and T. Sakaue, Eur. Phys. J. E 34, 135 (2011).

P. Rowghanian and A. Y. Grosberg, J. Phys. Chem. B 115, (2011).

J. L. A. Dubbeldam, V. G. Rostiashvili, A. Milchev, and T. A. Vilgis, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 85, 041801 (2012).

T. Ikonen, A. Bhattacharya, T. Ala-Nissila, and W. Sung, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 85, 051803 (2012).

T. Ikonen, A. Bhattacharya, T. Ala-Nissila, and W. Sung, J. Chem. Phys. 137, 085101 (2012).

A. Milchev, K. Binder, and A. Bhattacharya, J. Chem. Phys. 121, 6042 (2004).

K. Luo, T. Ala-Nissila, and S.-C. Ying, J. Chem. Phys. 124, 034714 (2006).

K. Luo, T. Ala-Nissila, and S.-C. Ying, J. Chem. Phys. 124, 114704 (2006).

I. Huopaniemi, K. Luo, T. Ala-Nissila, and S.-C. Ying, J. Chem. Phys. 125, 124901 (2006).

D. Wei, W. Yang, X. Jin, and Q. Liao, J. Chem. Phys. 126, 204901 (2007).

S. Matysiak, A. Montesi, M. Pasquali, A. Kolomeisky, and C. Clementi, Phys. Rev. Lett. 96, 118103 (2006).

S. Guillouzic and G. W. Slater, Phys. Lett. A 359, 261 (2006).

M. G. Gauthier and G. W. Slater, J. Chem. Phys. 128, 065103 (2008).

M. G. Gauthier and G. W. Slater, J. Chem. Phys. 128, 205103 (2008).

M. G. Gauthier and G. W. Slater, Eur. Phys. J. E 25, 17 (2008).

M. G. Gauthier and G. W. Slater, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 79, 021803 (2009).

M. Kenward and G. W. Slater, Eur. Phys. J. E 20, 125 (2006).

M. Kenward and G. W. Slater, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 78, 051806 (2008).

H. W. De Haan and G. W. Slater, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 79, 021802 (2009).

H. W. De Haan and G. W. Slater, J. Chem. Phys. 134, 154905 (2011).

H. W. De Haan and G. W. Slater, J. Chem. Phys. 136, 154903 (2012).

K. Luo, S. Ollila, I. Huopaniemi, T. Ala-Nissila, P. Pomorski, M. Karttunen, S.-C. Ying, and A. Bhattacharya, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 78, 050901(R) (2008).

K. Luo, T. Ala-Nissila, S.-C. Ying, and R. Metzler, Europhys. Lett. 88, 68006 (2009).

R. Metzler and K. Luo, Eur. Phys. J. Spec. Top. 189, 119 (2010).

A. Bhattacharya, W. H. Morrison, K. Luo, T. Ala-Nissila, S.-C. Ying, A. Milchev, and K. Binder, Eur. Phys. J. E 29, 423 (2009).

A. Bhattacharya and K. Binder, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 81, 041804 (2010).

V. V. Lehtola, R. P. Linna, and K. Kaski, Europhys. Lett. 85, 58006 (2009).

V. V. Lehtola, R. P. Linna, and K. Kaski, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 78, 061803 (2008).

V. V. Lehtola, K. Kaski, and R. P. Linna, Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. 82, 031908 (2010).

A. Bhattacharya, Phys. Proc. 3, 1411 (2010).

M. Rubinstein and R. H. Colby, Polymer Physics (Oxford Univ. Press, Oxford, 2003).

A. Yu. Grosberg and A. R. Khokhlov, Statistical Physics of Macromolecules (Nauka, Moscow, 1989; AIP, Ithaca, 1994).

G. S. Grest and K. Kremer, Phys. Rev. A 33, 3628 (1986).

P. G. De Gennes, Scaling Concepts in Polymer Physics (Cornell Univ. Press, Ithaca, 1979).

D. W. Schaefer, J. F. Joanny, and P. Pincus, Macromolecules 13, 1280 (1980).

W. F. Van Gunsteren and H. J. C. Berendsen, Mol. Phys. 45, 637 (1982).

P. Pincus, Macromolecules 9, 386 (1976).