Transcriptomic analyses of chemosensory genes in Trichogramma japonicum (Hymenoptera: Trichogrammatidae)
Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics - Tập 37 - Trang 100755 - 2021
Tài liệu tham khảo
Benton, 2009, Variant ionotropic glutamate receptors as chemosensory receptors in Drosophila, Cell, 136, 149, 10.1016/j.cell.2008.12.001
Bolger, 2014, Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, 30, 2114, 10.1093/bioinformatics/btu170
Chen, 2010, Control efficacy of Trichogramma japonicum against Chilo suppressalis and Chilaraea auricilia, Yingyong Shengtai Xuebao, 21, 743
Dahanukar, 2007, Two Gr genes underlie sugar reception in Drosophila, Neuron, 56, 503, 10.1016/j.neuron.2007.10.024
Davidson, 2014, Corset: enabling differential gene expression analysis for de novo assembled transcriptomes, Genome Biol., 15
De Moraes, 1998, Herbivore-infested plants selectively attract parasitoids, Nature, 393, 570, 10.1038/31219
Fatouros, 2005, Chemical communication - butterfly anti-aphrodisiac lures parasitic wasps, Nature, 433, 704, 10.1038/433704a
Grabherr, 2011, Full-length transcriptome assembly from RNA-Seq data without a reference genome, Nat. Biotechnol., 29, 644, 10.1038/nbt.1883
Hallem, 2004, The odor coding system of Drosophila, Trends Genet., 20, 453, 10.1016/j.tig.2004.06.015
Hansson, 2011, Evolution of insect olfaction, Neuron, 72, 698, 10.1016/j.neuron.2011.11.003
He, 2020, Analysis of the antennal transcriptome and odorant-binding protein expression profiles of the parasitoid wasp Encarsia formosa, Genomics, 112, 2291, 10.1016/j.ygeno.2019.12.025
Jalali, 1992, Differential response of 4 Trichogramma species to low-temperatures for short-term storage, Entomophaga, 37, 159, 10.1007/BF02372984
Knecht, 2016, Distinct combinations of variant ionotropic glutamate receptors mediate thermosensation and hygrosensation in Drosophila, Elife, 5, 10.7554/eLife.17879
Knecht, 2017, Ionotropic receptor-dependent moist and dry cells control hygrosensation in Drosophila, Elife, 6, 10.7554/eLife.26654
Larkin, 2007, Clustal W and Clustal X version 2.0, Bioinformatics, 23, 2947, 10.1093/bioinformatics/btm404
Larsson, 2004, Or83b encodes a broadly expressed odorant receptor essential for Drosophila olfaction, Neuron, 43, 703, 10.1016/j.neuron.2004.08.019
Letunic, 2016, Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees, Nucleic Acids Res., 44, W242, 10.1093/nar/gkw290
Li, 2011, RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome, BMC Bioinformatics, 12, 10.1186/1471-2105-12-323
Liu, 2018, Transcriptome characterization and gene expression analysis related to chemoreception in Trichogramma chilonis, an egg parasitoid, Gene, 678, 288, 10.1016/j.gene.2018.07.065
Livak, 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2(−Delta Delta C(T)) method, Methods, 25, 402, 10.1006/meth.2001.1262
Marchler-Bauer, 2011, CDD: a Conserved Domain Database for the functional annotation of proteins, Nucleic Acids Res., 39, D225, 10.1093/nar/gkq1189
Missbach, 2014, Evolution of insect olfactory receptors, Elife, 3
Mora, 2011, How many species are there on Earth and in the ocean?, PLoS Biol., 9, 10.1371/journal.pbio.1001127
Ni, 2013, A gustatory receptor paralogue controls rapid warmth avoidance in Drosophila, Nature, 500, 580, 10.1038/nature12390
Ni, 2016, The ionotropic receptors IR21a and IR25a mediate cool sensing in Drosophila, Elife, 5, 10.7554/eLife.13254
Nishimura, 2012, Transcriptome pyrosequencing of the parasitoid wasp Cotesia vestalis: genes involved in the antennal odorant-sensory system, PLoS One, 7, 10.1371/journal.pone.0050664
Panaro, 2000, Evaluation of DNA fragment sizing and quantification by the Agilent2100 Bioanalyzer, Clin. Chem., 46, 1851, 10.1093/clinchem/46.11.1851
Pelosi, 2006, Soluble proteins in insect chemical communication, Cell. Mol. Life Sci., 63, 1658, 10.1007/s00018-005-5607-0
Pelosi, 2014, Soluble proteins of chemical communication: an overview across arthropods, Front in Physiology, 5, 320, 10.3389/fphys.2014.00320
Petersen, 2011, SignalP 4.0: discriminating signal peptides from transmembrane regions, Nat. Methods, 8, 785, 10.1038/nmeth.1701
Pitts, 2014, Odorant receptor-mediated sperm activation in disease vector mosquitoes, Proc. Natl. Acad. Sci. U. S. A., 111, 2566, 10.1073/pnas.1322923111
Robertson, 2003, Molecular evolution of the insect chemoreceptor gene superfamily in Drosophila melanogaster, Proc. Natl. Acad. Sci. U. S. A., 100, 14537, 10.1073/pnas.2335847100
Robertson, 2010, The insect chemoreceptor superfamily of the parasitoid jewel wasp Nasonia vitripennis, Insect Mol. Biol., 19, 121, 10.1111/j.1365-2583.2009.00979.x
Rombel, 2002, ORF-FINDER: a vector for high-throughput gene identification, Gene, 282, 33, 10.1016/S0378-1119(01)00819-8
Rytz, 2013, Ionotropic receptors (IRs): chemosensory ionotropic glutamate receptors in Drosophila and beyond, Insect Biochem. Mol. Biol., 43, 888, 10.1016/j.ibmb.2013.02.007
Sato, 2008, Insect olfactory receptors are heteromeric ligand-gated ion channels, Nature, 452, 1002, 10.1038/nature06850
Sheng, 2017, Candidate chemosensory genes identified in the endoparasitoid Meteorus pulchricornis (Hymenoptera: Braconidae) by antennal transcriptome analysis, Comparative Biochemistry and Physiology D-Genomics & Proteomics, 22, 20, 10.1016/j.cbd.2017.01.002
Smith, 1996, Biological control with Trichogramma: advances, successes, and potential of their use, Annu. Rev. Entomol., 41, 375, 10.1146/annurev.en.41.010196.002111
Stortkuhl, 2001, Functional analysis of an olfactory receptor in Drosophila melanogaster, Proc. Natl. Acad. Sci. U. S. A., 98, 9381, 10.1073/pnas.151105698
Tamura, 2013, MEGA6: molecular evolutionary genetics analysis version 6.0, Molecular Biology Evolution, 30, 2725, 10.1093/molbev/mst197
Thorne, 2008, Atypical expression of Drosophila gustatory receptor genes in sensory and central neurons, J. Comp. Neurol., 506, 548, 10.1002/cne.21547
Vandesompele, 2002, Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes, Genome Biol., 3, 10.1186/gb-2002-3-7-research0034
Vinson, 1998, The general host selection behavior of parasitoid Hymenoptera and a comparison of initial strategies utilized by larvaphagous and oophagous species, Biol. Control, 11, 79, 10.1006/bcon.1997.0601
Vosshall, 1999, A spatial map of olfactory receptor expression in the Drosophila antenna, Cell, 96, 725, 10.1016/S0092-8674(00)80582-6
Wang, 2017, Characteristics and classification position of the ionotropic receptor genes IR8a and IR25a in four vector mosquito species of medical importance, Acta Entomol. Sin., 60, 379
Weiss, 2011, The molecular and cellular basis of bitter taste in Drosophila, Neuron, 69, 258, 10.1016/j.neuron.2011.01.001
Wetzel, 2001, Functional expression and characterization of a Drosophila odorant receptor in a heterologous cell system, Proc. Natl. Acad. Sci. U. S. A., 98, 9377, 10.1073/pnas.151103998
Wu, 2017, Identification and sex expression profiling of odorant-binding protein genes in Trichogramma japonicum (Hymenoptera: Trichogrammatidae) using RNA-Seq, Appl. Entomol. Zool., 52, 623, 10.1007/s13355-017-0516-x
Xiang, 2010, Light-avoidance-mediating photoreceptors tile the Drosophila larval body wall, Nature, 468, 921, 10.1038/nature09576
Yuan, 2012, Performance of four Chinese Trichogramma species as biocontrol agents of the rice striped stem borer, Chilo suppressalis, under various temperature and humidity regimes, J. Pest. Sci., 85, 497, 10.1007/s10340-012-0456-8
Yuvaraj, 2018, Antennal transcriptome analysis of the chemosensory gene families from trichoptera and basal lepidoptera, Front. Physiol., 9, 1365, 10.3389/fphys.2018.01365
Zhang, 2013, Effects of host-egg ages on host selection and suitability of four Chinese Trichogramma species, egg parasitoids of the rice striped stem borer, Chilo suppressalis, BioControl, 59, 159, 10.1007/s10526-013-9557-4
Zhang, 2013, The molecular basis for attractive salt-taste coding in Drosophila, Science, 340, 1334, 10.1126/science.1234133
Zhang, 2016, Sensory and immune genes identification and analysis in a widely used parasitoid wasp Trichogramma dendrolimi (Hymenoptera: Trichogrammatidae), Insect Science, 23, 417, 10.1111/1744-7917.12330