Transcriptome analysis of postharvest pear (Pyrus pyrifolia Nakai) in response to Penicillium expansum infection

Scientia Horticulturae - Tập 288 - Trang 110361 - 2021
Meiqiu Xu1, Xiaoyun Zhang1, Solairaj Dhanasekaran1, Esa Abiso Godana1, Qiya Yang1, Lina Zhao1, Hongyin Zhang1
1School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013 Jiangsu, People’s Republic of China

Tài liệu tham khảo

Adie, 2007, Modulation of plant defenses by ethylene, J. Plant Growth Regul., 26, 160, 10.1007/s00344-007-0012-6 Jones, 2006, The plant immune system, Nature, 444, 323, 10.1038/nature05286 Andreasson, 2005, The MAP kinase substrate MKS1 is a regulator of plant defense responses, EMBO J., 24, 2579, 10.1038/sj.emboj.7600737 Ashburner, 2000, Gene ontology: tool for the unification of biology, Nature Genet., 25, 25, 10.1038/75556 Archambault, 2011, PR-10, defensin and cold dehydrin genes are among those over expressed in Oxytropis (Fabaceae) species adapted to the arctic, Funct. Integr. Genomics., 11, 497, 10.1007/s10142-011-0223-6 Barad, 2016, Fungal and host transcriptome analysis of pH-regulated genes during colonization of apple fruits by Penicillium expansum, BMC Genomics, 17, 330, 10.1186/s12864-016-2665-7 Beauchamp, 1971, Superoxide dismutase: improved assays and an assay applicable to acrylamide gels, Anal. Biochem., 44, 276, 10.1016/0003-2697(71)90370-8 Bennett, 1994, Secondary metabolites in plant defence mechanisms, New Phytol., 127, 617, 10.1111/j.1469-8137.1994.tb02968.x Bertini, 2003, Pathogen-responsive wheat PR4 genes are induced by activators of systemic acquired resistance and wounding, Plant Sci., 164, 1067, 10.1016/S0168-9452(03)00112-2 Bidzinski, 2016, Transcriptional basis of drought-induced susceptibility to the rice blast fungus Magnaporthe oryzae, Front. Plant Sci., 7, 1, 10.3389/fpls.2016.01558 Canonne, 2011, Phospholipases in action during plant defense signaling, Plant Signal. Behav., 6, 13, 10.4161/psb.6.1.14037 Clarke, 2000, Roles of salicylic acid, jasmonic acid, and ethylene incpr-induced resistance in Arabidopsis, Plant Cell, 12, 2175, 10.1105/tpc.12.11.2175 Cui, 2015, Effector-triggered immunity: from pathogen perception to robust defense, Annu. Rev. Plant Biol., 66, 487, 10.1146/annurev-arplant-050213-040012 De Pinto, 2012, Redox regulation in plant programmed cell death, Plant Cell Environ., 35, 234, 10.1111/j.1365-3040.2011.02387.x Deng, 2016, Role of brassinosteroid signaling in modulating Tobacco mosaic virus resistance in Nicotiana benthamiana, Sci. Rep., 6, e20579, 10.1038/srep20579 Ehsanimoghaddam, 2006, Superoxide dismutase responses of strawberry cultivars to infection by Mycosphaerella fragariae, J. Plant Physiol., 163, 147, 10.1016/j.jplph.2005.04.025 Ernst, 2006, STEM: a tool for the analysis of short time series gene expression data, BMC Bioinformatics, 7, 191, 10.1186/1471-2105-7-191 Eulgem, 2000, The WRKY superfamily of plant transcription factors, Trends Plant Sci., 5, 199, 10.1016/S1360-1385(00)01600-9 Fits, 2000, ORCA3, a jasmonate-responsive transcriptional regulator of plant primary and secondary metabolism, Science, 289, 295, 10.1126/science.289.5477.295 Fraser, 2011, The phenylpropanoid pathway in Arabidopsis, Arabidopsis Book, 9, e0152, 10.1199/tab.0152 Fu, 2018, Central role of adenosine 5′-Phosphosulfate reductase in the control of plant sulfide metabolism, Front. Plant Sci., 9, e1404, 10.3389/fpls.2018.01404 González-Candelas, 2010, A transcriptomic approach highlights induction of secondary metabolism in citrus fruit in response to Penicillium digitatum infection, BMC Plant Biol., 10, 194, 10.1186/1471-2229-10-194 Greenberg, 2004, The role and regulation of programmed cell death in plant–pathogen interactions, Cell Microbiol., 6, 201, 10.1111/j.1462-5822.2004.00361.x Hardulak, 2011, Sulfur metabolism as a support system for plant heavy metal tolerance, 289 Hirakawa, 2014, Dissection of the octoploid strawberry genome by deep sequencing of the genomes of Fragaria species, DNA Res., 21, 169, 10.1093/dnares/dst049 Jain, 2018, Role of pathogenesis-related (PR) proteins in plant defense mechanism, Molecular Aspects of Plant-Pathogen Interaction, 265, 10.1007/978-981-10-7371-7_12 Liu, 2013, Review: utilization of antagonistic yeasts to manage postharvest fungal diseases of fruit, Int. J. Food Microbiol., 167, 153, 10.1016/j.ijfoodmicro.2013.09.004 Ag, 1990, Compendium of apple and pear diseases, Mycologia, 82, 802, 10.2307/3760176 Joyard, 1998, The biochemical machinery of plastid envelope membranes, Plant Physiol., 118, 715, 10.1104/pp.118.3.715 Kanehisa, 2000, KEGG: kyoto encyclopedia of genes and genomes, Nucleic Acids Res., 28, 27, 10.1093/nar/28.1.27 Kazan, 2009, Linking development to defense: auxin in plant–pathogen interactions, Trends Plant Sci., 14, 373, 10.1016/j.tplants.2009.04.005 Kim, 2015, HISAT: a fast spliced aligner with low memory requirements, Nat. Methods, 12, 357, 10.1038/nmeth.3317 Kim, 2014, Cloning and characterization of pathogenesis-related protein 4 gene from Panax ginseng, Russ. J. Plant Physiol., 61, 664, 10.1134/S1021443714050100 Kong, 2015, Phenylalanine ammonia-lyase, a key component used for phenylpropanoids production by metabolic engineering, RSC Adv, 5, 62587, 10.1039/C5RA08196C Kukurba, 2015, RNA Sequencing and Analysis, Cold Spring Harb. Protoc., 951 Liu, 2010, Reactive oxygen species are involved in plant defense against a gall midge, Plant Physiol., 152, 985, 10.1104/pp.109.150656 Livak, 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method, Methods, 25, 402, 10.1006/meth.2001.1262 Loreto, 2014, Plant volatiles and the environment, Plant Cell Environ., 37, 1905, 10.1111/pce.12369 Lowe, 2017, Transcriptomics technologies, PLoS Comput. Biol., 13, 10.1371/journal.pcbi.1005457 Ma, 2017, Comparative transcriptomics reveals how wheat responds to infection byZymoseptoria tritici, Mol. Plant-Microbe Interact., 31, 420, 10.1094/MPMI-10-17-0245-R Maleck, 2000, The transcriptome of Arabidopsis thaliana during systemic acquired resistance, Nature Genet, 26, 403, 10.1038/82521 Mandal, S., Mitra, A., Mallick, N., 2008. Biochemical characterization of oxidative burst during interaction between Solanum lycopersicum and Fusarium oxysporum f. sp. lycopersici. Physiol. Mol. Plant Pathol.. 72, 56–61. https://doi.org/10.1016/j.pmpp.2008.04.002. Masia, 1998, Superoxide dismutase and catalase activities in apple fruit during ripening and post-harvest and with special reference to ethylene, Physiol. Plant., 104, 668, 10.1034/j.1399-3054.1998.1040421.x Mauchmani, 2005, The role of abscisic acid in plant-pathogen interactions, Curr. Opin. Plant Biol., 8, 409, 10.1016/j.pbi.2005.05.015 Mckey, 1974, Adptive patterns in alkaloid physiology, Am. Nat., 108, 305, 10.1086/282909 Mikkelsen, 2002, Biosynthesis and metabolic engineering of glucosinolates, Amino Acids, 22, 279, 10.1007/s007260200014 Mishra, 2012, Browning of litchi fruit pericarp: role of polyphenol oxidase, peroxidase, phenylalanine ammonia lyase and effect of gamma radiation, J. Food Biochem., 36, 604, 10.1111/j.1745-4514.2011.00572.x O'Connell, 2012, Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses, Nature Genet., 44, 1060, 10.1038/ng.2372 OuYang, 2016, Transcriptional profiling analysis of Penicillium digitatum, the causal agent of citrus green mold, unravels an inhibited ergosterol biosynthesis pathway in response to citral, BMC Genomics, 17, 599, 10.1186/s12864-016-2943-4 Palmer, 2017, Salicylic acid-mediated plant defense: recent developments, missing links, and future outlook, Front. Biol. China., 12, 258, 10.1007/s11515-017-1460-4 Poltronieri, 2019, Engineering plant leucine rich repeat-receptors for enhanced pattern-triggered immunity (PTI) and effector-triggered immunity (ETI), 1 Reymond, 1998, Jasmonate and salicylate as global signals for defense gene expression, Curr. Opin. Plant Biol., 1, 404, 10.1016/S1369-5266(98)80264-1 Rushton, 2002, Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound-induced signaling, Plant Cell, 14, 749, 10.1105/tpc.010412 Saijo, 2018, Pattern recognition receptors and signaling in plant-microbe interactions, Plant J., 93, 592, 10.1111/tpj.13808 Shine, 2016, Cooperative functioning between phenylalanine ammonia lyase and isochorismate synthase activities contributes to salicylic acid biosynthesis in soybean, New Phytol., 212, 627, 10.1111/nph.14078 Sonderby, 2010, Biosynthesis of glucosinolates - gene discovery and beyond, Trends Plant Sci., 15, 283, 10.1016/j.tplants.2010.02.005 Tian, 2016, Molecular aspects in pathogen-fruit interactions: virulence and resistance, Postharvest Biol. Technol., 122, 11, 10.1016/j.postharvbio.2016.04.018 Ton, 2009, The multifaceted role of ABA in disease resistance, Trends Plant Sci., 14, 310, 10.1016/j.tplants.2009.03.006 Tripathi, 2004, Exploitation of natural products as an alternative strategy to control postharvest fungal rotting of fruit and vegetables, Postharvest Biol. Technol., 32, 235, 10.1016/j.postharvbio.2003.11.005 Van Breusegem, 2006, Reactive oxygen species in plant cell death, Plant Physiol., 141, 384, 10.1104/pp.106.078295 Van Loon, 2006, Ethylene as a modulator of disease resistance in plants, Trends Plant Sci., 11, 184, 10.1016/j.tplants.2006.02.005 Velasco, 2010, The genome of the domesticated apple (Malus × domestica Borkh.), Nature Genet., 42, 833, 10.1038/ng.654 Verk, 2008, A novel WRKY transcription factor is required for induction of PR-1a gene expression by salicylic acid and bacterial elicitors, Plant Physiol., 146, 1983, 10.1104/pp.107.112789 Wang, 2016, Metabolic engineering of terpene biosynthesis in plants using a trichome-specific transcription factor MsYABBY5 from spearmint (Mentha spicata), Plant Biotechnol. J., 14, 1619, 10.1111/pbi.12525 Wang, 2018, Exploring the effect of β-glucan on the biocontrol activity of Cryptococcus podzolicus against postharvest decay of apples and the possible mechanisms involved, Biol. Control., 121, 14, 10.1016/j.biocontrol.2018.02.001 Winkelshirley, 2002, Biosynthesis of flavonoids and effects of stress, Curr. Opin. Plant Biol., 5, 218, 10.1016/S1369-5266(02)00256-X Winnenburg, 2006, PHI-base: a new database for pathogen host interactions, Nucleic Acids Res., 34, 459, 10.1093/nar/gkj047 Xu, 2020, Ultrastructure observation and transcriptome analysis ofPenicillium expansum invasion in postharvest pears, Postharvest Biol. Technol., 165, 10.1016/j.postharvbio.2020.111198 Xu, 2013, The draft genome of sweet orange (Citrus sinensis), Nature Genet., 45, 59, 10.1038/ng.2472 Yang, J.K., Tong, Z.J., Fang, D.H., Chen, X.J., Zhang, K.Q., Xiao, B.G., 2017. Transcriptomic profile of tobacco in response to Phytophthora nicotianae infection. Sci. Rep.. 7, 401. https://doi.org/10.1038/s41598-017-00481-5. Yang, 2015, Crosstalk among jasmonate, salicylate and ethylene signaling pathways in plant disease and immune responses, Curr. Protein Pept. Sci., 16, 450, 10.2174/1389203716666150330141638 Yu, 2007, Indole-3-acetic acid enhances the biocontrol of Penicillium expansum andBotrytis cinerea on pear fruit byCryptococcus laurentii, FEMS Yeast Res., 7, 459, 10.1111/j.1567-1364.2006.00171.x