Phân Tích Transcriptome Của Lá Sophora davidii Đáp Ứng Với Căng Thẳng Phospho Thấp

Anthony M, Oriol F, Arenillas DJ, Chen CY, Grégoire D, Jessica L, Shi W, Casper S, Tan G, Rebecca WH (2016) JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucl Acids Res 44(D1):D110–D115 Calderon-Vazquez C, Sawers RJH, Herrera-Estrella L (2011) Phosphate deprivation in maize: genetics and genomics. Plant Physiol 156(3):1067–1077 Chakhchar A, Lamaoui M, Aissam S, Ferradous A, Wahbi S (2019) Physiological and carbohydrate metabolism traits for discrimination of drought-tolerant elite ecotypes of Argania spinosa. Plant Physiol Rep 24(3):388–398 Chen HZ, Zhao YH, Yang SZ, Chu-Ying LI, Zu-Dong AS (2008) Symptoms and tolerant limit of different genotype soybeans under phosphorus stress. Soybean Ence 27(1):165–169 Chiou TJ, Lin SI (2011) Signaling network in sensing phosphate availability in plants. Annu Rev Plant Biol 62(1):185–206 Chu Q, Zhang L, Zhou J, Yuan L, Rengel Z (2020) Soil plant-available phosphorus levels and maize genotypes determine the phosphorus acquisition efficiency and contribution of mycorrhizal pathway. Plant Soil 499(1–2):357–371 Ciereszko I, Barbachowska A (2000) Sucrose metabolism in leaves and roots of bean (Phaseolus vulgaris L) during phosphate deficiency. J Plant Physiol 156(5):640–644 Dai X, Wang Y, Zhang WH (2016) OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice. J Exp Bot 67(3):947–960 Dan-Dan G, Zhi-Jun Z, Hong-Mei L, Xuan-Qin C, Dan L, Rong-Tao L (2020) Four new quinolizidine alkaloids from the flowers of Sophora viciifolia. Phytochem Lett 36:91–94 Devaiah BN, Madhuvanthi R, Karthikeyan AS, Raghothama KG (2009) Phosphate starvation responses and gibberellic acid biosynthesis are regulated by the MYB62 transcription factor in arabidopsis. Mol Plant 2(1):43–58 Ding W, Wang Y, Fang W, Gao S, Li X, Xiao K (2016) TaZAT8, a C2H2-ZFP type transcription factor gene in wheat, plays critical roles in mediating tolerance to Pi deprivation through regulating P acquisition, ROS homeostasis and root system establishment. Physiol Plant 158(3):297–311 Dissanayaka DMSB, Nishida S, Tawaraya K, Wasaki J (2018) Organ-specific allocation pattern of acquired phosphorus and dry matter in two rice genotypes with contrasting tolerance to phosphorus deficiency. Soil Sci Plant Nutr 64(3):282–290 Dong C, Zhang H, Yang Y, He X, Liu L, Fu J, Shi J, Wu Z (2019) Physiological and transcriptomic analyses to determine the responses to phosphorus utilization in Nostoc sp. Harmful Algae 84:10–18 Du QG, Wang K, Xu C, Zou C, Xie C, Xu Y, Li WX (2016) Strand-specific RNA-Seq transcriptome analysis of genotypes with and without low-phosphorus tolerance provides novel insights into phosphorus-use efficiency in maize. BMC Plant Biol 16(1):222 Fan F, Wang Q, Li H, Ding G, Wen X (2020) Transcriptome-wide identification and expression profiles of masson pine WRKY transcription factors in response to low phosphorus stress. Plant Mol Biol Rep 39(1):1–9 Fangel JU, Peter Ulvskov JP (2012) Cell wall evolution and diversity. Front Plant Sci. https://doi.org/10.3389/fpls.2012.00152 Ferrol N, Azcón-Aguilar C, Pérez-Tienda J (2019) Review: arbuscular mycorrhizas as key players in sustainable plant phosphorus acquisition: an overview on the mechanisms involved. Plant Sci 280:441–447 Gao M, Zhang S, Luo C, He X, Wei S, Jiang W, He F, Lin Z, Yan M, Dong W (2018) Transcriptome analysis of starch and sucrose metabolism across bulb development in Sagittaria sagittifolia. Gene 649:99–112 Ha S, Lam-Son T (2014) Understanding plant responses to phosphorus starvation for improvement of plant tolerance to phosphorus deficiency by biotechnological approaches. Crit Rev Biotechnol 34(1):16–30 Heuer S, Gaxiola R, Schilling R, Herrera-Estrella L, López-Arredondo D, Wissuwa M, Delhaize E, Rouached H (2017) Improving phosphorus use efficiency—a complex trait with emerging opportunities. Plant J Cell Mol Biol 90(5):868 Hml T, Tiffin P (2020) Biased gene conversion constrains adaptation in Arabidopsis thaliana. Genetics 215(3):302020–303335 Jia H, Zhang S, Wang L, Yang Y, Zhang H, Cui H, Shao H, Xu G (2017) OsPht1;8, a phosphate transporter, is involved in auxin and phosphate starvation response in rice. J Exp Bot 68(18):5057–5068 Jiao-Da YU, Ying LI, Yin DY, Zhou CF, Xiang-Qing MA (2017) Response and physiological mechanism of Chinese fir to low phosphorus stress. For Res 30(4):566–575 Keke Yi ZWJZ (2005) OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice. Plant Physiol 138(4):2087–2096 Kudoyarova GR, Vysotskaya LB, Feoktistova AV, Ivanov II, Akhiyarova GR (2019) Effect of phosphate deficit on root growth, production of reactive oxygen species and hormone content in barley plants. J Sib Fed Univ Biol 13(2):1–6 Lambers H, Finnegan PM, Jost R, Plaxton WC, Shane MW, Stitt M (2015) Phosphorus nutrition in proteaceae and beyond. Nat Plants 1(8):15109 Lenka SK, Katiyar A, Chinnusamy V, Bansal KC (2015) Comparative analysis of drought-responsive transcriptome in Indica rice genotypes with contrasting drought tolerance. Plant Biotechnol J 9(3):315–327 Li B, Dewey CN (2011) RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinform 12(1):323 Lian H, Qin C, Zhang L, Zhang C, Li H, Zhang S (2019) Lanthanum nitrate improves phosphorus-use efficiency and tolerance to phosphorus-deficiency stress in Vigna angularis seedlings. Protoplasma 256(2):383–392 Lin B, Liu X, Wu S, Zheng H, Huo K, Qi S, Chen C (2019a) Phytochemicals content, antioxidant and antibacterial activities of Sophora viciifolia. Chem Biodivers. https://doi.org/10.1002/cbdv.201900080 Lin S, Yu L, Zhang H (2019b) Transcriptomic responses to thermal stress and varied phosphorus conditions in Fugacium kawagutii. Microorganisms 7(4):96 Long L, Ma X, Ye L, Zeng J, Zhang G (2019) Root plasticity and Pi recycling within plants contribute to low-P tolerance in Tibetan wild barley. BMC Plant Biol 19(1):1–13 López-Arredondo DL, Leyva-González MA, González-Morales SI, López-Bucio J, Herrera-Estrella L (2014) Phosphate nutrition: improving low-phosphate tolerance in crops. Annu Rev Plant Biol 65(1):95–123 Mechthild T (2014) Transporters involved in source to sink partitioning of amino acids and ureides: opportunities for crop improvement. J Exp Bot 7:1865 Meng Q, Zhang W, Hu X, Shi X, Chen L, Dai X, Qu H, Xia Y, Liu W, Gu M (2020) Two ADP-glucose pyrophosphorylase subunits, OsAGPL1 and OsAGPS1, modulate phosphorus homeostasis in rice. Plant J 104(5):1269–1284 Muzammil S, Hesham FA, Khalid RH, Niaz A, Inayat UR, Mohd M, Yasir A (2020) De novo transcriptome analysis of Lantana camara L. revealed candidate genes involved in phenylpropanoid biosynthesis pathway. Sci Rep. https://doi.org/10.1038/s41598-020-70635-5 Nadia B, Zaigham S, Aida R, Abbas KG, Pierre B, Chedly A, Yves P, Hatem R (2017) Phosphate and zinc transport and signalling in plants: toward a better understanding of their homeostasis interaction. J Exp Bot 20:5725 Oono Y, Kawahara Y, Yazawa T, Kanamori H, Kuramata M, Yamagata H, Hosokawa S, Minami H, Ishikawa S, Wu J (2013) Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles. Plant Mol Biol 83(6):523–537 Pang J, Zhao H, Bansal R, Bohuon E, Siddique KHM (2018) Leaf transpiration plays a role in phosphorus acquisition among a large set of chickpea genotypes. Plant Cell Environ. https://doi.org/10.1111/pce.13139 Park MR, Baek SH, Reyes BGDL, Song JY, Hasenstein KH (2012) Transcriptome profiling characterizes phosphate deficiency effects on carbohydrate metabolism in rice leaves. J Plant Physiol 169(2):193–205 Peng L, Qian L, Wang M, Liu W, Zhao M (2021) Comparative transcriptome analysis during seeds development between two soybean cultivars. PeerJ 9(1):e10772 Péret B, Clément M, Nussaume L, Desnos T (2011) Root developmental adaptation to phosphate starvation: better safe than sorry. Trends Plant Ence 16(8):442–450 Pfaffl MW (2001) A new mathematical model for relative quantification in realtime RT-PCR. Nucl Acids Res 29(9):45 Ramaiah M, Jain A, Raghothama KG (2014) Ethylene Response Factor070 regulates root development and phosphate starvation-mediated responses. Plant Physiol 164(3):1484–1498 Ruan W, Guo M, Wu P, Yi K (2017) Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice. Plant Mol Biol 93(3):327–340 Salehi, R., Vazan, S., Golzardi, F., and Ashraf, M. (2014) Effects of salinity at germination and seedling growth stage on two population of redroot pigweed (Amaranthus retroflexus L.). In First International and 13th Iranian Crop Science Congress and 3rd Iranian Seed Science and Technology Conference. Silva AT, Ligterink W, Hilhorst HWM (2017) Metabolite profiling and associated gene expression reveal two metabolic shifts during the seed-to-seedling transition in Arabidopsis thaliana. Plant Mol Biol 95(4–5):481–496 Su X, Xia Y, Jiang W, Shen G, Pang Y (2020) GbMYBR1 from Ginkgo biloba represses phenylpropanoid biosynthesis and trichome development in arabidopsis. Planta 252(4):68 Theodorou ME (1993) Metabolic adaptations of plant respiration to nutritional phosphate deprivation. Plant Physiol 101(2):339–344 Tiwari JK, Buckseth T, Devi S, Varshney S, Rai A (2020a) Physiological and genome-wide RNA-sequencing analyses identify candidate genes in a nitrogen-use efficient potato cv. Kufri Gaurav. Plant Physiol Biochem 154:171–183 Tiwari JK, Buckseth T, Singh RK, Kumar M, Kant S (2020b) Prospects of improving nitrogen use efficiency in potato: lessons from transgenics to genome editing strategies in plants. Front Plant Sci. https://doi.org/10.3389/fpls.2020.597481 Tiwari JK, Buckseth T, Zinta R, Saraswati A, Chakrabarti SK (2020c) Transcriptome analysis of potato shoots, roots and stolons under nitrogen stress. Sci Rep. https://doi.org/10.1038/s41598-020-58167-4 Wallin G, Hall M, Slaney M, Rantfors M, Medhurst J, Linder S (2013) Spring photosynthetic recovery of boreal Norway spruce under conditions of elevated [CO2] and air temperature. Tree Physiol 33(11):1177–1191 Wang L, ZengJ HQ, Song J, Feng SJ, Yang ZM (2015b) miRNA778 and SUVH6 are involved in phosphate homeostasis in arabidopsis. Plant Sci 238:273–285 Wang G, Zeng H, Hu X, Zhu Y, Chen Y, Shen C, Wang H, Poovaiah BW, Du L (2015a) Identification and expression analyses of calmodulin-binding transcription activator genes in soybean. Plant Soil 386(1–2):205–221 Wang Q, Wang J, Yang Y, Du W, Zhang D, Yu D, Cheng H (2016) A genome-wide expression profile analysis reveals active genes and pathways coping with phosphate starvation in soybean. BMC Genomics 17(1):192 Wang F, Deng M, Xu J, Zhu X, Mao C (2017) Molecular mechanism of phosphate signaling in plants. Semin Cell Dev Biol. https://doi.org/10.1016/j.semcdb.2017.06.013 Wang F, Deng M, Xu J, Zhu X, Mao C (2018) Molecular mechanisms of phosphate transport and signaling in higher plants. Semin Cell Dev Biol 74:114–122 Wang J, Qin Q, Pan J, Sun L, Sun Y, Xue Y, Song K (2019a) Transcriptome analysis in roots and leaves of wheat seedlings in response to low-phosphorus stress. Sci Rep 9(1):19802 Wang X, Liu H, Yu F, Hu B, Zhao H (2019b) Differential activity of the antioxidant defence system and alterations in the accumulation of osmolyte and reactive oxygen species under drought stress and recovery in rice (Oryza sativa L.) tillering. Sci Rep 9(1):8543 Wang X, Wang HF, Chen Y, Sun MM, Wang Y, Chen YF (2020) The transcription factor NIGT1.2 modulates both phosphate uptake and nitrate influx during phosphate starvation in arabidopsis and maize. Plant Cell 32(11):3519–3534 Wei B, Hou K, Zhang H, Wang X, Wu W (2020) Integrating transcriptomics and metabolomics to studies key metabolism, pathways and candidate genes associated with drought-tolerance in Carthamus tinctorius L. under drought stress. Ind Crops Prod 151:112465 Wendrich JR, Yang BJ, Vandamme N, Verstaen K, Rybel BD (2020) Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions. Science. https://doi.org/10.1126/science.aay4970 Xi Y, Park SY, Kim DW, Kim EE, Sung S (2020) Transcriptome and epigenome analyses of vernalization in Arabidopsis thaliana. Plant J 103(4):1490–1502 Xue A, Huijun Z, Jingqi L, Haiying W, Futi X, Xiaori H (2013) Physiological and biochemical characteristics of soybean genotypes with different phosphorus efficiencies under various phosphorus concentrations. Commun Soil Ence Plant Anal 44(19):2796–2808 Yan L, Su L, Li R, Li H, Sun F (2020) Differential gene expression responding to low phosphate stress in leaves and roots of maize by cDNA-SRAP. Biomed Res Int 2020:1–13 Zhang Y, Zhou Y, Chen S, Liu J, Fan K (2019) Gibberellins play dual roles in response to phosphate starvation of tomato seedlings, negatively in shoots but positively in roots. J Plant Physiol 234–235:145–153 Yuan J, Sun X, Guo T, Chao Y, Han L (2020) Global transcriptome analysis of alfalfa reveals six key biological processes of senescent leaves. PeerJ 8(10):e8426 Zhang H, Uddin MS, Zou C, Xie C, Xu Y, Li WX (2014) Meta-analysis and candidate gene mining of low-phosphorus tolerance in maize. J Integr Plant Biol 56(003):262–270 Zhang L, Lin Q, Feng Y, Fan X, Zou F, Yuan DY, Zeng X, Cao H (2015) Transcriptomic identification and expression of starch and sucrose metabolism genes in the seeds of Chinese chestnut (Castanea mollissima). J Agric Food Chem 63(3):929 Zhang J, Jiang F, Shen Y, Zhan Q, Chi Y (2019a) Transcriptome analysis reveals candidate genes related to phosphorus starvation tolerance in sorghum. BMC Plant Biol. https://doi.org/10.1186/s12870-019-1914-8 Zhang, W., Wang, Y., Zhu, D., Chen, H., Xiang, J., Zhang, Y., Hui, W.U., Guohui, H.U., Zihao, Y.I., and Zhang, Y. (2019) Response of Grain Starch and Sucrose Metabolism-related Enzyme Activities to Night Temperature Rise in Conventional Indica Rice Huanghuazhan. Curr Biotechnol Zhao L, Wang P, Chen C, Song G, Tang H (2017) Effects of exogenous Ca~(2+) on the growth, physiological characters of Sophora viciifolia Seedlings in Karst mountain area under the drought stress. J Nucl Agric Ences 31(10):2039–2046 Zheng X, Liu C, Qiao L, Zhao J, Han R, Wang X, Ge C, Zhang W, Zhang S, Qiao L (2020) The MYB transcription factor TaPHR3-A1 is involved in phosphate signaling and governs yield-related traits in bread wheat. J Exp Bot 71(19):5808–5822 Zheng Z-L (2009) Carbon and nitrogen nutrient balance signaling in plants. Plant Signal Behav 4(7):584–591 Zhenyi LI, Zhang QX, Tong ZY, Yue LI, Hongyu XU, Wan XF, Shuyi BI, Cao J, Feng HE, Wan LQ (2017) Analysis of morphological and physiological responses to low pi stress in different alfalfas. Entia Agric Sinica 50(20):3898–3907