Towards high-resolution three-dimensional imaging of native mammalian tissue: Electron tomography of frozen-hydrated rat liver sections

Al-Amoudi, 2003, An oscillating cryo-knife reduces cutting-induced deformation of vitreous ultrathin sections, J. Microsc., 212, 26, 10.1046/j.1365-2818.2003.01244.x Al-Amoudi, 2004, Cryo-electron microscopy of vitreous sections of native biological cells and tissues, J. Struct. Biol., 148, 131, 10.1016/j.jsb.2004.03.010 Al-Amoudi, 2005, Cutting artifacts and cutting process in vitreous sections for cryo-electron microscopy, J. Struct. Biol., 150, 109, 10.1016/j.jsb.2005.01.003 Buchanan, 1993, Quantitative scanning transmission electron microscopy of ultrathin cryosections: subcellular organelles in rapidly frozen liver and cerebellar cortex, J. Struct. Biol., 110, 244, 10.1006/jsbi.1993.1027 Chang, 1983, Freezing, sectioning and observation artifacts of frozen hydrated sections for electron microscopy, J. Microsc., 132, 109, 10.1111/j.1365-2818.1983.tb04714.x Crowther, 1970, The reconstruction of a three-dimensional structure from its projections and its application to electron microscopy, Proc. R. Soc. Lond. (A), 317, 319, 10.1098/rspa.1970.0119 Dahl, 1989, High-pressure freezing for the preservation of biological structure: theory and practice, J. Electron Microsc. Tech., 13, 165, 10.1002/jemt.1060130305 Dubochet, 1988, Cryo-electron microscopy of vitrified specimens, Q. Rev. Biophys., 21, 129, 10.1017/S0033583500004297 Dubochet, 2001, The cell in absence of aggregation artifacts, Micron, 32, 91, 10.1016/S0968-4328(00)00026-3 Echlin, 1992 Erk, 1998, Electron microscopy of frozen biological objects: a study using cryosectioning and cryosubstitution, J. Microsc., 189, 236, 10.1046/j.1365-2818.1998.00323.x Forbes, 1986, Dog hairs as section manipulators, EMSA Bull., 16, 67 Förster, 2005, Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography, Proc. Natl. Acad. Sci. USA, 102, 4729, 10.1073/pnas.0409178102 Frangakis, 2004, Computational exploration of structural information from cryo-electron tomograms, Curr. Opin. Struct. Biol., 14, 325, 10.1016/j.sbi.2004.04.003 Frank, 1996, SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields, J. Struct. Biol., 116, 190, 10.1006/jsbi.1996.0030 Frank, 2002, Three-dimensional imaging of biological complexity, J. Struct. Biol., 138, 85, 10.1016/S1047-8477(02)00019-9 Frederik, 1982, Concerning the nature of the cryosectioning process, J. Microsc., 125, 167, 10.1111/j.1365-2818.1982.tb00334.x Frederik, 1984, Surface defects on thin cryosections, Scan. Electron Microsc., 1, 433 Frey, 2000, The internal structure of mitochondria, Trends Biochem. Sci., 25, 319, 10.1016/S0968-0004(00)01609-1 Giddings, 2003, Freeze-substitution protocols for improved visualization of membranes in high-pressure frozen samples, J. Microsc., 212, 53, 10.1046/j.1365-2818.2003.01228.x Grimm, 1998, Improving image quality by zero-loss energy filtering: quantitative assessment by means of image cross-correlation, J. Microsc., 190, 339, 10.1046/j.1365-2818.1998.00322.x Grünewald, 2002, Prospects of electron cryotomography to visualize macromolecular complexes inside cellular compartments: implications of crowding, Biophys. Chem., 100, 577, 10.1016/S0301-4622(02)00307-1 He, 2003, Untangling desmosomal knots with electron tomography, Science, 320, 109, 10.1126/science.1086957 Hohenberg, 1994, High pressure freezing of cell suspensions in cellulose capillary tubes, J. Microsc., 175, 34, 10.1111/j.1365-2818.1994.tb04785.x Hohenberg, 1996, High-pressure freezing of tissue obtained by fine-needle biopsy, J. Microsc., 183, 1, 10.1046/j.1365-2818.1996.820642.x Hsieh, 2002, Electron tomographic analysis of frozen-hydrated tissue sections, J. Struct. Biol., 138, 63, 10.1016/S1047-8477(02)00034-5 Hsieh, 2004, 3D Tomographic map of desmosome from frozen-hydrated skin sections, Microsc. Microanal., 10, 1188CD, 10.1017/S1431927604887026 Leforestier, 2001, Bilayers of nucleosome core particles, Biophys. J., 81, 2414, 10.1016/S0006-3495(01)75888-2 Leforestier, 2005, Combination of chirality and electrostatic effects in the supramolecular organization of nucleosome core particles assemblies, Microsc. Microanal., 11, 136 Leis, 2005, Cryo-electron tomography and fluorescence microscopy of unicellular algae in vitreous cryosections, Microsc. Microanal., 11, 330CD Mannella, 1994, The internal compartmentation of rat-liver mitochondria: tomographic study using the high-voltage transmission electron microscope, Microsc. Res. Tech., 27, 278, 10.1002/jemt.1070270403 Mannella, 1997, Reconsidering mitochondrial structure: new views of an old organelle, Trends Biochem. Sci., 22, 7, 10.1016/S0968-0004(96)30050-9 Mannella, 2001, Topology of the mitochondrial inner membrane: dynamics and bioenergetic implications, IUBMB Life, 52, 93, 10.1080/15216540152845885 Matsko, 2005, Epoxy resin as a fixative during freeze-substitution, J. Struct. Biol., 152, 92, 10.1016/j.jsb.2005.07.005 Matias, 2003, Cryo-transmission electron microscopy of frozen-hydrated sections of gram-negative bacteria, J. Bacteriol., 185, 6112, 10.1128/JB.185.20.6112-6118.2003 McDonald, 1994, Electron microscopy and EM immunochemistry, Methods Cell Biol., 44, 411, 10.1016/S0091-679X(08)60926-7 McDonald, 1999, High pressure freezing for preservation of high resolution fine structure and antigenicity for immunolabelling, Methods Mol. Biol., 117, 77 McDonald, 2002, Cryomethods for thin section electron microscopy, Methods Enzymol., 351, 96, 10.1016/S0076-6879(02)51843-7 McDowall, 1983, Electron microscopy of frozen hydrated sections of vitreous ice and vitrified biological samples, J. Microsc., 131, 1, 10.1111/j.1365-2818.1983.tb04225.x Medalia, 2002, Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography, Science, 289, 1209, 10.1126/science.1076184 Michel, 1991, Cryosectioning of plant material frozen at high pressure, J. Microsc., 163, 3, 10.1111/j.1365-2818.1991.tb03155.x Michel, 1992, Diamonds are a cryosectioner’s best friend, J. Microsc., 166, 43, 10.1111/j.1365-2818.1992.tb01506.x Moor, 1987, Theory and practice of high pressure freezing, 175 Nicastro, 2000, Cryo-electron tomography of Neurospora mitochondria, J. Struct. Biol., 129, 48, 10.1006/jsbi.1999.4204 Nicastro, 2005, Visualizing the macromolecular organization of chloroplast membranes using cryo-electron tomography, Microsc. Microanal., 11, 150 Norlén, 2003, A cryotransmission electron microscopy study of skin barrier formation, J. Invest. Dermatol., 120, 555, 10.1046/j.1523-1747.2003.12102.x Norlén, 2004, Stratum corneum keratin structure, function and formation—the cubic rod-packing and membrane templating model, J. Invest. Dermatol., 123, 715, 10.1111/j.0022-202X.2004.23213.x Penczek, 1995, Double-tilt electron tomography, Ultramicroscopy, 60, 393, 10.1016/0304-3991(95)00078-X Radermacher, M., Hoppe, W., 1980. Properties of three-dimensionally reconstructed objects from projections by conical tilting compared to single axis tilting. In: Proceedings of the 7th European Congress on Electron Microscopy, Den Haag, vol. 1, pp. 132–133. Rath, 2003, Fast 3D motif search of EM density maps using a locally normalized cross-correlation function, J. Struct. Biol., 144, 95, 10.1016/j.jsb.2003.09.029 Richter, 1991, A model for cryosectioning based on the morphology of vitrified ultrathin sections, J. Microsc., 163, 19, 10.1111/j.1365-2818.1991.tb03156.x Richter, 1994, Cutting artefacts on ultrathin cryosections of biological bulk specimens, Micron, 25, 297, 10.1016/0968-4328(94)90001-9 Sartori, 1993, Vitrification depth can be increased more than 10-fold by high-pressure freezing, J. Microsc., 172, 55, 10.1111/j.1365-2818.1993.tb03393.x Sartori, 1996, Electron-beam-induced amorphization of ice III or IX obtained by high-pressure freezing, J. Microsc., 182, 163, 10.1046/j.1365-2818.1996.61425.x Sartori-Blanc, 2001, DNA in human and stallion spermatozoa forms local hexagonal packing with twist and many defects, J. Struct. Biol., 134, 76, 10.1006/jsbi.2001.4365 Schwartz, 2003, Cryo-electron tomography of frozen-hydrated sections of eukaryotic cells, Microsc. Microanal., 9, 1166, 10.1017/S1431927603445832 Shi, 1996, Thickness measurement of hydrated and dehydrated cryosections by EELS, Microsc. Res. Tech., 33, 241, 10.1002/(SICI)1097-0029(19960215)33:3<241::AID-JEMT1>3.0.CO;2-T Shimoni, 1998, On optimizing high-pressure freezing: from heat transfer theory to a new microbiopsy device, J. Microsc., 192, 236, 10.1046/j.1365-2818.1998.00389.x Sitte, 1996, Advanced instrumentation and methodology related to cryoultramicrotomy: a review, Scanning Microsc., 387 Somlyo, 1977, Elemental distribution of striated muscle and the effects of hypertonicity, J. Cell Biol., 74, 824, 10.1083/jcb.74.3.828 Somlyo, 1985, Calcium content of mitochondria and endoplasmic reticulum in liver frozen rapidly in vivo, Nature, 314, 622, 10.1038/314622a0 Studer, 1989, High pressure freezing comes of age, Scanning Microsc., 253 Studer, 1995, Vitrification of articular cartilage by high-pressure freezing, J. Microsc., 179, 321, 10.1111/j.1365-2818.1995.tb03648.x Studer, 2001, A new approach for cryofixation by high-pressure freezing, J. Microsc., 203, 285, 10.1046/j.1365-2818.2001.00919.x Studer, 2000, Minimal compression of ultrathin sections with use of an oscillating diamond knife, J. Microsc., 197, 94, 10.1046/j.1365-2818.2000.00638.x Ting, 2005, Comparative three-dimensional imaging of environmentally critical cyanobacteria through cryo-electron tomography, Microsc. Microanal., 11, 332CD Van Harreveld, 1964, Electron microscopy after rapid freezing on a metal surface and substitution fixation, Anat. Rec., 149, 381, 10.1002/ar.1091490307 Vanhecke, 2003, A rapid microbiopsy system to improve the preservation of biological samples prior to high-pressure freezing, J. Microsc., 212, 3, 10.1046/j.1365-2818.2003.01226.x Vonk, 2000, Parameters affecting specimen flatness of two-dimensional crystals for electron crystallography, Ultramicroscopy, 5, 123, 10.1016/S0304-3991(00)00052-8 Wagenknecht, 2002, Electron tomography of frozen-hydrated isolated triad junctions, Biophys. J., 83, 2491, 10.1016/S0006-3495(02)75260-0 Zhang, 2004, Direct visualization of receptor arrays in frozen-hydrated sections and plunge-frozen specimens of E. coli engineered to overproduce the chemotaxis receptor Tsr, J. Microsc., 216, 76, 10.1111/j.0022-2720.2004.01395.x Zierold, 1994, The morphology of ultrathin cryosections, Ultramicroscopy, 14, 201, 10.1016/0304-3991(84)90088-3