Towards an integrated phylogenetic classification of the Tremellomycetes

Alshahni, 2011, Cryptococcus yokohamensis sp. nov., a basidiomycetous yeast isolated from trees and a Queensland koala kept in a Japanese zoological park, International Journal of Systematic and Evolutionary Microbiology, 61, 3068, 10.1099/ijs.0.027144-0 Avise, 1999, Proposal for a standardized temporal scheme of biological classification for extant species, Proceedings of the National Academy of Sciences of the United States of America, 96, 7358, 10.1073/pnas.96.13.7358 Avise, 2011, On the temporal inconsistencies of Linnean taxonomic ranks, Biological Journal of the Linnean Society, 102, 707, 10.1111/j.1095-8312.2011.01624.x Bab'eva, 1998, Tausonia pamirica gen. nov. sp. nov., a psychrophilic yeast-like micromycete from the soils of Pamir, Mikrobiologiia, 67, 189 Bab'eva, 2002, Mrakia curviuscula sp. nov.: a new psychrophilic yeast from forest substrates, Microbiology (Moscow), 71, 449, 10.1023/A:1019801828620 Bandoni, 1979, Fibulobasidium: a new genus in the Sirobasidiaceae, Canadian Journal of Botany, 57, 264, 10.1139/b79-036 Bandoni, 1984, The Tremellales and Auriculariales: an alternative classification, Transactions of the Mycological Society of Japan, 25, 489 Bandoni, 1995, Dimorphic heterobasidiomcetes: taxonomy and parasitism, Studies in Mycology, 38, 13 Bandoni, 2011, Trimorphomyces Bandoni & Oberwinkler, 1591 Bandoni, 2011, Tremella Persoon (1794), 1567 Bandoni, 1983, On some species of Tremella described by Alfred Möller, Mycologia, 75, 854, 10.2307/3792776 Bandoni, 2011, Sirobasidium de Lagerheim & Patouillard (1982), 1545 Barraclough, 2015, The evolutionary reality of species and higher taxa in plants: a survey of post-modern opinion and evidence, New Phytologist, 207, 291, 10.1111/nph.13232 Bauer, 2006, The simple-septate basidiomycetes: a synopsis, Mycological Progress, 5, 41, 10.1007/s11557-006-0502-0 Behrend, 1890, Über Trichomycosis nodosa (Juhel-Rénoy): piedra (Osorio), Berlin Klinische Wochenschrift, 27, 464 Berthier, 1980, Une nouvelle tremellale clavarioide Heterocephalacria solida gen. et sp. nov, Mycotaxon, 12, 111 Boekhout, 2011, Bullera Derx (1930), 1635 Boekhout, 1991, Bulleromyces genus novum (Tremellales), a teleomorph for Bullera alba, and the occurrence of mating in Bullera variabilis, Antonie van Leeuwenhoek, 59, 81, 10.1007/BF00445652 Boekhout, 1993, Classification of heterobasidiomycetous yeasts: characteristics and affiliation of genera to higher taxa of Heterobasidiomycetes, Canadian Journal of Microbiology, 39, 276, 10.1139/m93-040 Boekhout, 2011, Discussion of teleomorphic and anamorphic basidiomycetous yeasts, 1356 Botha, 2006, Yeasts in soil, 21 Castresana, 2001, Cytochrome b phylogeny and the taxonomy of great apes and mammals, Molecular Biology and Evolution, 18, 465, 10.1093/oxfordjournals.molbev.a003825 Celio, 2006, Assembling the Fungal Tree of Life: constructing the structural and biochemical database, Mycologia, 98, 850, 10.3852/mycologia.98.6.850 Chen, 1998, Morphological and molecular studies in the genus Tremella, Bibliotheca Mycologica, 174, 1 Chen, 2012, Kwoniella shandongensis sp. nov., a basidiomycetous yeast isolated from soil and bark from an apple orchard, International Journal of Systematic and Evolutionary Microbiology, 62, 2774, 10.1099/ijs.0.039172-0 Colombo, 2011, Current knowledge of Trichosporon spp. and Trichosporonosis, Clinical Microbiology Reviews, 24, 682, 10.1128/CMR.00003-11 David-Palma, 2014, Global distribution, diversity hot spots and niche transitions of an astaxanthin-producing eukaryotic microbe, Molecular Ecology, 23, 921, 10.1111/mec.12642 de García, 2010, Cryptococcus spencermartinsiae sp. nov., a basidiomycetous yeast isolated from glacial waters and apple fruits, International Journal of Systematic and Evolutionary Microbiology, 60, 707, 10.1099/ijs.0.013177-0 de Garcia, 2012, Cryptococcus species (Tremellales) from glacial biomes in the southern (Patagonia) and northern (Svalbard) hemispheres, FEMS Microbiology Ecology, 82, 523, 10.1111/j.1574-6941.2012.01465.x Diddens, 1934, Eine neue Pilzgattung, Hyalodendron, Zentralblatt für Bakteriologie und Parasitenkunde Abteilung II, 90, 315 Farris, 1976, Phylogenetic classification of fossils with recent species, Systematic Biology, 25, 271 Fell, 2011, Mrakia Y. Yamada & Komagata (1987), 1503 Fell, 1999, Separation of strains of the yeasts Xanthophyllomyces dendrorhous and Phaffia rhodozyma based on rDNA IGS and ITS sequence analysis, Journal of Industrial Microbiology & Biotechnology, 21, 677, 10.1038/sj.jim.2900681 Fell, 2000, Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis, International Journal of Systematic and Evolutionary Microbiology, 50, 1351, 10.1099/00207713-50-3-1351 Fell, 2001, Basidiomycetous yeasts, 3 Fell, 2011, Guehomyces Fell & Scorzetti (2004), 1773 Fell, 2011, Xanthophyllomyces Golubev (1995), 1595 Fell, 1989, Proposal to conserve Cryptococcus (Fungi), Taxon, 38, 151, 10.2307/1220923 Fell, 1999, Cystofilobasidiales, a new order of basidiomycetous yeasts, International Journal of Systematic and Evolutionary Microbiology, 49, 907, 10.1099/00207713-49-2-907 Fell, 2004, Reassignment of the basidiomycetous yeasts Trichosporon pullulans to Guehomyces pullulans gen. nov., comb. nov. and Hyalodendron lignicola to Trichosporon lignicola comb. nov, International Journal of Systematic and Evolutionary Microbiology, 54, 995, 10.1099/ijs.0.03017-0 Fell, 2007, Molecular diversity and intragenomic variability in the yeast genus Xanthophyllomyces: the origin of Phaffia rhodozyma?, FEMS Yeast Research, 7, 1399, 10.1111/j.1567-1364.2007.00297.x Findley, 2009, Phylogeny and phenotypic characterization of pathogenic Cryptococcus species and closely related saprobic taxa in the Tremellales, Eukaryotic Cell, 8, 353, 10.1128/EC.00373-08 Findley, 2012, Discovery of a modified tetrapolar sexual cycle in Cryptococcus amylolentus and the evolution of MAT in the Cryptococcus species complex, PLoS Genetics, 8, e1002528, 10.1371/journal.pgen.1002528 Fonseca, 2011, Cryptococcus Vuillemin (1901), 1661 Fonseca, 2006, Phylloplane yeasts, 263 Fries, 1821, Systema Mycologicum, I, lv Fungsin, 2006, Bullera koratensis sp. nov. and Bullera lagerstroemiae sp. nov., two new ballistoconidium-forming yeast species in the Trichosporonales clade isolated from plant leaves in Thailand, The Journal of General Applied Microbiology, 52, 73, 10.2323/jgam.52.73 Gadanho, 2009, International Journal of Systematic and Evolutionary Microbiology, 59, 2375, 10.1099/ijs.0.008920-0 Ginns, 1986, The genus Syzygospora (Heterobasidiomycetes, Syzygosporaceae), Mycologia, 78, 619, 10.2307/3807775 Göker, 2009, Molecular taxonomy of phytopathogenic fungi: a case study in Peronospora, PLoS One, 4, e6319, 10.1371/journal.pone.0006319 Göker, 2010, A clustering optimization strategy for molecular taxonomy applied to planktonic foraminifera SSU rDNA, Evolutionary Bioinformatics Online, 6, 97, 10.4137/EBO.S5504 Goloboff, 2008, TNT, a free program for phylogenetic analysis, Cladistics, 24, 774, 10.1111/j.1096-0031.2008.00217.x Golubev, 1995, Perfect state of Rhodomyces dendrorhous (Phaffia rhodozyma), Yeast, 11, 101, 10.1002/yea.320110202 Golubev, 2009, New filobasidiaceous yeasts found in the phylloplane of a fern, Journal of General and Applied Microbiology, 55, 441, 10.2323/jgam.55.441 Goto, 1963, On a new yeast genus Naganishia, Journal of Fermentation Technology, 41, 459 Guého, 1992, Neotypification of the genus Trichosporon, Antonie van Leeuwenhoek, 61, 285, 10.1007/BF00713937 Guého, 1992, Contributions to a revision of the genus Trichosporon, Antonie van Leeuwenhoek, 61, 289, 10.1007/BF00713938 Guého, 1998, Trichosporon Behrend, 854 Guerreiro, 2013, Molecular and genetic evidence for a tetrapolar mating system in the basidiomycetous yeast Kwoniella mangrovensis and two novel sibling species, Eukaryotic Cell, 12, 746, 10.1128/EC.00065-13 Hagen, 2015, Recognition of seven species in the Cryptococcus gattii/Cryptococcus neoformans species complex, Fungal Genetics and Biology, 78, 16, 10.1016/j.fgb.2015.02.009 Heitman, 2011, 3 Hennig, 1966 Hibbett, 2007, A high-level phylogenetic classification of the Fungi, Mycological Research, 3, 509, 10.1016/j.mycres.2007.03.004 Holt, 2014, Reconciling hierarchical taxonomy with molecular phylogenies, Systematic Biology, 63, 1010, 10.1093/sysbio/syu061 Hui, 2012, Cryptococcus nanyangensis sp. nov., a new basidiomycetous yeast isolated from the gut of wood-boring larvae, Current Microbiology, 65, 617, 10.1007/s00284-012-0203-7 Humphreys, 2014, The evolutionary reality of higher taxa in mammals, Proceedings of the Royal Society B-Biological Sciences, 281, 2013, 10.1098/rspb.2013.2750 Inácio, 2005, Phylloplane yeasts from Portugal: seven novel anamorphic species in the Tremellales lineage of the Hymenomycetes (Basidiomycota) producing orange-coloured colonies, FEMS Yeast Research, 5, 1167, 10.1016/j.femsyr.2005.05.007 James, 2006, Reconstructing the early evolution of the fungi using a six gene phylogeny, Nature, 443, 818, 10.1038/nature05110 Johns, 1998, A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene, Molecular Biology and Evolution, 15, 1481, 10.1093/oxfordjournals.molbev.a025875 Jülich, 1981, Bibliotheca Mycologica, 85, 1 Kirk, 2008 Kirschner, 2008, A new species of Trimorphomyces (Basidiomycota, Tremellales) from Taiwan, Nova Hedwigia, 87, 445, 10.1127/0029-5035/2008/0087-0445 Kirschner, 2001, Cuniculitrema polymorpha (Tremellales, gen. nov. and sp. nov.), a heterobasidiomycete vectored by bark beetles, which is the teleomorph of Sterigmatosporidium polymorphum, Antonie van Leeuwenhoek, 80, 149, 10.1023/A:1012275204498 Knapp, 2011, Changes to publication requirements made at the XVIII International Botanical Congress in Melbourne – what does e-publication mean for you?, MycoKeys, 1, 21, 10.3897/mycokeys.1.1961 Kraepelin, 1982, Sterigmatosporidium gen. n., a new heterothallic basidiomycetous yeast, the perfect state of a new species of Sterigmatomyces fell, Antonie van Leeuwenhoek, 48, 471, 10.1007/BF00448420 Kurtzman, 2003, Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora, FEMS Yeast Research, 4, 233, 10.1016/S1567-1356(03)00175-2 Kurtzman, 2007, Multigene phylogenetic analysis of the Lipomycetaceae and the proposed transfer of Zygozyma species to Lipomyces and Babjevia anomala to Dipodascopsis, FEMS Yeast Research, 7, 1027, 10.1111/j.1567-1364.2007.00246.x 2011 Kurtzman, 2011, Methods for isolation, phenotypic characterization and maintenance of yeasts, 87 Kurtzman, 2003, Phylogenetic relationships among yeasts of the ‘Saccharomyces complex’ determined from multigene sequence analyses, FEMS Yeast Research, 3, 417, 10.1016/S1567-1356(03)00012-6 Kurtzman, 2007, Multigene phylogenetic analysis of the Trichomonascus, Wickerhamiella and Zygoascus yeast clades, and the proposal of Sugiyamaella gen. nov. and 14 new species combinations, FEMS Yeast Research, 7, 141, 10.1111/j.1567-1364.2006.00157.x Kurtzman, 2008, Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene sequence analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov, FEMS Yeast Research, 8, 939, 10.1111/j.1567-1364.2008.00419.x Kützing, 1833 Kwon-Chung, 1975, A new genus, Filobasidiella, the perfect state of Cryptococcus neoformans, Mycologia, 67, 1197, 10.2307/3758842 Kwon-Chung, 1976, A new species of Filobasidiella, the sexual state of Cryptococcus neoformans B and C serotypes, Mycologia, 68, 942, 10.2307/3758813 Kwon-Chung, 1987, Filobasidiaceae – a taxonomic survey, Studies in Mycology, 30, 75 Kwon-Chung, 2011, Filobasidiella Kwon-Chung (1975), 1443 Kwon-Chung, 1995, The characteristics that differentiate Filobasidiella depauperata from Filobasidiella neoformans, Studies in Mycology, 38, 67 Landell, 2015, Bullera vrieseae sp. nov., a tremellaceous yeast species isolated from bromeliads, International Journal of Systematic and Evolutionary Microbiology, 65, 2466, 10.1099/ijs.0.000285 Landell, 2009, Cryptococcus bromeliarum sp. nov., an orange-coloured basidiomycetous yeast isolated from bromeliads in Brazil, International Journal of Systematic and Evolutionary Microbiology, 59, 910, 10.1099/ijs.0.005652-0 Lindgren, 2015, The phylogenetic analysis of fungi associated with lichenized ascomycete genus Bryoria reveals new lineages in the Tremellales including a new species Tremella huuskonenii hyperparasitic on Phacopsis huuskonenii, Fungal Biolology, 119, 844, 10.1016/j.funbio.2015.06.005 Liu, 2015, Phylogeny of tremellomycetous yeasts and related dimorphic and filamentous basidiomycetes reconstructed from multiple gene sequence analyses, Studies in Mycology, 81, 1, 10.1016/j.simyco.2015.08.001 Lodder, 1952 Lopandic, 2011, Fellomyces Y. Yamada & Banno (1984), 1759 Lumbsch, 2002, How objective are genera in euascomycetes?, Perspectives in Plant Ecology Evolution and Systematics, 5, 91, 10.1078/1433-8319-00025 Margesin, 2008, Mrakiella cryoconiti gen. nov., sp. nov., a psychrophilic, anamorphic, basidiomycetous yeast from alpine and arctic habitats, International Journal of Systematic and Evolutionary Microbiology, 58, 2977, 10.1099/ijs.0.2008/000836-0 McLaughlin, 1995, A microscopist's view of heterbasidiomycete phylogeny, Studies in Mycology, 38, 91 McNeil, 2006, 1 McNeill, 2012 McPartland, 1991, Neotypification of Trichosporon beigelii: morphological, pathological and taxonomic consideration, Mycotaxon, 41, 173 Meier-Kolthoff, 2013, Genome sequence-based species delimitation with confidence intervals and improved distance functions, BMC Bioinformatics, 14, 60, 10.1186/1471-2105-14-60 Meier-Kolthoff, 2014, Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age, International Journal of Systematic and Evolutionary Microbiology, 64, 352, 10.1099/ijs.0.056994-0 Metzler, 1989, Rhynchogastrema gen. nov. and Rhynchogastremaceae fam. nov. (Tremellales), Systematic and Applied Microbiology, 12, 280, 10.1016/S0723-2020(89)80075-X Middelhoven, 2001, Trichosporon porosum comb. nov., an anamorphic basidiomycetous yeast inhabiting soil, related to the loubieri/laibachii group of species that assimilate hemicelluloses and phenolic compounds, FEMS Yeast Research, 1, 15 Middelhoven, 2004, Systematics of the anamorphic basidiomycetous yeast genus Trichosporon Behrend with the description of five novel species: Trichosporon vadense, T. smithiae, T. dehoogii, T. scarabaeorum and T. gamsii, International Journal of Systematic and Evolutionary Microbiology, 54, 975, 10.1099/ijs.0.02859-0 Millanes, 2011, Phylogeny and character evolution in the jelly fungi (Tremellomycetes, Basidiomycota, Fungi), Molecular Phylogenetics and Evolution, 61, 12, 10.1016/j.ympev.2011.05.014 Miller, 1976, Phaffia, a new yeast genus in the Deuteromycotina (Blastomycetes), International Journal of Systematic Bacteriology, 26, 286, 10.1099/00207713-26-2-286 Möller, 1895, Protobasidiomyceten, Vol. 8, 1 Monaghan, 2009, Accelerated species inventory on Madagascar using coalescent-based models of species delineation, Systematic Biology, 58, 298, 10.1093/sysbio/syp027 Moore, 1980, Taxonomic proposals for the classification of marine yeasts and other yeast-like fungi including the smuts, Botanica Marina, 23, 361 Motaung, 2013, Trichosporon vanderwaltii sp. nov., an asexual basidiomycetous yeast isolated from soil and beetles, Antonie van Leeuwenhoek, 103, 313, 10.1007/s10482-012-9811-2 Nakase, 2004, Two new ballistoconidium-forming yeast species, Bullera melastomae and Bullera formosana, found in Taiwan, Systematic and Applied Microbiology, 27, 558, 10.1078/0723202041748118 Nakase, 1993, Molecular approaches to the taxonomy of ballistosporous yeasts based on the analysis of the partial nucleotide sequences of 18S ribosomal ribonucleic acids, The Journal of General and Applied Microbiology, 39, 107, 10.2323/jgam.39.107 Nannizzi, 1934, 4, 1 Nguyen, 1998, Composition of the cell walls of several yeast species, Applied Microbiology and Biotechnology, 50, 206, 10.1007/s002530051278 Niwata, 2002, Udeniomyces pannonicus sp. nov., a ballisto-conidium-forming yeast isolated from leaves of plants in Hungary, International Journal of Systematic and Evolutionary Microbiology, 52, 1887 Oberwinkler, 1981, Tetragoniomyces gen. nov. and Tetragoniomycetaceae fam. nov. (Tremellales), Canadian Journal of Botany, 59, 1034, 10.1139/b81-141 Oberwinkler, 1982, Carcinomycetaceae: a new family in the Heterobasidiomycetes, Nordic Journal of Botany, 2, 501, 10.1111/j.1756-1051.1982.tb01216.x Oberwinkler, 1990, Phragmoxenidium mycophilum sp. nov., an unusual mycoparasitic heterobasidiomycete, Systematic and Applied Microbiology, 13, 186, 10.1016/S0723-2020(11)80167-0 Okoli, 2007, Cryptotrichosporon anacardii gen. nov., sp. nov., a new Trichosporonoid capsulate basidiomycetous yeast from Nigeria that is able to form melanin on niger seed agar, FEMS Yeast Research, 7, 339, 10.1111/j.1567-1364.2006.00164.x Olive, 1968, An unusual heterobasidiomycete with Tilletia-like basidia, Journal of the Elisha Mitchell Scientific Society, 84, 261 Paradis, 2006 Patouillard, 1900, 17 Pattengale, 2009, How many bootstrap replicates are necessary?, Lecture Notes in Computer Science, 5541, 184, 10.1007/978-3-642-02008-7_13 Pons, 2006, Sequence-based species delimitation for the DNA taxonomy of undescribed insects, Systematic Biology, 55, 595, 10.1080/10635150600852011 Prillinger, 2007, Asterotremella gen. nov. albida, an anamorphic tremelloid yeast isolated from the agarics Asterophora lycoperdoides and Asterophora parasitica, The Journal of General and Applied Microbiology, 53, 167, 10.2323/jgam.53.167 Prillinger, 1993, Analysis of cell wall carbohydrates (neutral sugars) from ascomycetous and basidiomycetous yeasts with and without derivatization, The Journal of General and Applied Microbiology, 39, 1, 10.2323/jgam.39.1 Rabenhorst, 1867, Zwei Parasiten an den todten haaren der Chignons, Hedwigia, 6, 1 R Core Team, 2015 Rea, 1912, New and rare British fungi, Transactions of the British Mycological Society, 3, 376, 10.1016/S0007-1536(07)80072-6 Roberts, 1999, British Tremella species II: T. encephala, T. steidleri & T. foliacea, Mycologist, 13, 127, 10.1016/S0269-915X(99)80044-5 Rodriguez-Carres, 2010, Morphological and genomic characterization of Filobasidiella depauperata: a homothallic sibling species of the pathogenic Cryptococcus species complex, PLoS One, 5, e9620, 10.1371/journal.pone.0009620 Russo, 2010, Cryptococcus agrionensis sp. nov., a basidiomycetous yeast of the acidic rock drainage ecoclade, isolated from an acidic aquatic environment of volcanic origin, International Journal of Systematic and Evolutionary Microbiology, 60, 996, 10.1099/ijs.0.012534-0 Sampaio, 2004, Diversity, phylogeny and classification of basidiomycetous yeasts, 49 Sampaio, 2011, Cystofilobasidium Oberwinkler & Bandoni (1983), 1423 Sampaio, 2011, Tausonia Bab'eva (1998), 1999 Sampaio, 2011, Auriculibuller Sampaio (2004), 1379 Sampaio, 1995, Physiological aspects in the systematic of heterobasidiomycetous yeasts, Studies in Mycology, 38, 29 Sampaio, 2004, Auriculibuller fuscus gen. nov., sp. nov. and Bullera japonica sp. nov., novel taxa in the Tremellales, International Journal of Systematic and Evolution Microbiology, 54, 987, 10.1099/ijs.0.02970-0 Sampaio, 2002, New taxa in the Tremellales: Bulleribasidium oberjochense gen. et sp. nov., Papiliotrema bandonii gen. et sp. nov. and Fibulobasidium murrhardtense sp. nov, Mycologia, 94, 873, 10.2307/3761703 Sanderson, 2002, Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach, Molecular Biology and Evolution, 19, 101, 10.1093/oxfordjournals.molbev.a003974 Satoh, 2013, Cryptococcus lacticolor sp. nov. and Rhodotorula oligophaga sp. nov., novel yeasts isolated from the nasal smear microbiota of Queensland koalas kept in Japanese zoological parks, Antonie van Leeuwenhoek, 104, 83, 10.1007/s10482-013-9928-y Scorzetti, 2002, Systematics of basidiomycetous yeasts: a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions, FEMS Yeast Research, 2, 495, 10.1111/j.1567-1364.2002.tb00117.x Shin, 2006, Cryptococcus mujuensis sp. nov. and Cryptococcus cuniculi sp. nov., basidiomycetous yeasts isolated from wild rabbit faeces, International Journal of Systematic and Evolutionary Microbiology, 56, 2241, 10.1099/ijs.0.64353-0 Sivakumaran, 2002, Genetic relatedness among Filobasidiella species, Mycopathologia, 156, 157, 10.1023/A:1023309311643 Stamatakis, 2014, RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, 30, 1312, 10.1093/bioinformatics/btu033 Stamatakis, 2008, A rapid bootstrap algorithm for the RAxML web servers, Systematic Biology, 57, 758, 10.1080/10635150802429642 Statzell-Tallman, 2008, Kwoniella mangroviensis gen. nov., sp. nov. (Tremellales, Basidiomycota), a teleomorphic yeast from mangrove habitats in the Florida Everglades and Bahamas, FEMS Yeast Research, 8, 103, 10.1111/j.1567-1364.2007.00314.x Stautz, 1931, Beiträge zur Schleimflussfrage, Phytopathologische Zeitschrift, 3, 163 Stielow, 2011, Species delimitation in taxonomically difficult fungi: the case of Hymenogaster, PLoS One, 6, e15614, 10.1371/journal.pone.0015614 Sugita, 1998, Molecular phylogenetic study of the basidiomycetous anamorphic yeast genus Trichosporon and related taxa based on small subunit ribosomal DNA sequences, Mycoscience, 39, 7, 10.1007/BF02461572 Sugita, 2011, Trichosporon Behrend (1890), 2015 Sugita, 2004, Analysis of Trichosporon isolates obtained from the houses of patients with summer-type hypersensitivity pneumonitis, Journal of Clinical Microbiology, 42, 5467, 10.1128/JCM.42.12.5467-5471.2004 Sun, 2011, Validation of Kwoniella heveanensis, teleomorph of the basidiomycetous yeast Cryptococcus heveanensis, Mycotaxon, 116, 227, 10.5248/116.227 Sylvester, 2015, Temperature and host preferences drive the diversification of Saccharomyces and other yeasts: a survey and the discovery of eight new yeast species, FEMS Yeast Research, 10.1093/femsyr/fov002 Takashima, 2000, Taxonomic significance of fucose in the class Urediniomycetes: distribution of fucose in cell wall and phylogeny of urediniomycetous yeasts, Systematic and Applied Microbiology, 23, 63, 10.1016/S0723-2020(00)80047-8 Takashima, 2015, Selection of orthologous genes for construction of a highly resolved phylogenetic tree and clarification of the phylogeny of Trichosporonales species, PLoS One, 10, e0131217, 10.1371/journal.pone.0131217 Takashima, 1999, Molecular phylogeny of the genus Cryptococcus and related species based on the sequences of SSU rDNA and internal transcribed spacer regions, Microbiology and Culture Collection, 15, 35 Takashima, 2011, Kockovaella Nakase, Banno & Y. Yamada (1991), 1781 Takashima, 2001, Reclassification of the Cryptococcus humicola complex, International Journal of Systematic and Evolutionary Microbiology, 51, 2199, 10.1099/00207713-51-6-2199 Takashima, 2003, Three new combinations from the Cryptococcus laurentti complex: Cryptococcus aureus, Cryptococcus carnescens and Cryptococcus peneaus, International Journal of Systematic and Evolutionary Microbiology, 53, 1187, 10.1099/ijs.0.02498-0 Talavera, 2013, Establishing criteria for higher-level classification using molecular data: the systematics of Polyommatus blue butterflies (Lepidoptera, Lycaenidae), Cladistics, 29, 166, 10.1111/j.1096-0031.2012.00421.x Tanimura, 2014, Cryptococcus terricola is a promising oleaginous yeast for biodiesel production from starch through consolidated bioprocessing, Scientific Reports, 4, 4776, 10.1038/srep04776 Therneau, 2015 Tindall, 2010, Notes on the characterization of prokaryote strains for taxonomic purposes, International Journal of Systematic and Evolutionary Microbiology, 60, 249, 10.1099/ijs.0.016949-0 Tsuchiya, 1974, Serologic aspects on yeast classification, Mycopathologia et Mycologia Applicata, 53, 77, 10.1007/BF02127199 Turchetti, 2015, Cryptococcus vaughanmartiniae sp. nov. and Cryptococcus onofrii sp. nov.: two new species isolated from worldwide cold environments, Extremophiles, 19, 149, 10.1007/s00792-014-0692-3 Valente, 2012, Bandoniozyma gen. nov., a genus of germentative and non-fermentative tremellaceous yeast species, PLoS One, 7, e46060, 10.1371/journal.pone.0046060 Van der Walt, 1970, Criteria and methods used in classification, 34 Van der Walt, 1987, The yeasts – a conspectus, 19 Van der Walt, 1984, Methods for the isolation, maintenance, classification and identification of yeasts, 45 Vences, 2013, To name or not to name: criteria to promote economy of change in Linnaean classification schemes, Zootaxa, 3636, 201, 10.11646/zootaxa.3636.2.1 Vogelmann, 2012, Cryptococcus thermophilus sp. nov., isolated from cassava sourdough, International Journal of Systematic and Evolutionary Microbiology, 62, 1715, 10.1099/ijs.0.032748-0 Vuillemin, 1901, Les blastomycètes pathogènes, Revue Générale des Sciences Pures et Appliquées, 12, 732 Wang, 2015, Molecular phylogenetic analysis of ballistoconidium-forming yeasts in Trichosporonales (Tremellomycetes): a proposal for Takashimella gen. nov. and Cryptotrichosporon tibetense sp. nov, PLoS One, 10, e0132653, 10.1371/journal.pone.0132653 Wang, 2008, FEMS Yeast Research, 8, 799, 10.1111/j.1567-1364.2008.00403.x Wang, 2011, Proposal of Mingxiaea gen. nov. for the anamorphic basidiomycetous yeast species in the Bulleribasidium clade (Tremellales) based on molecular phylogenetic analysis, with six new combinations and four novel species, International Journal of Systematic and Evolutionary Microbiology, 61, 210, 10.1099/ijs.0.019299-0 Wang, 2007, Cryptococcus tibetensis sp. nov., a novel basidiomycetous anamorphic yeast species isolated from plant leaves, The Journal of General and Applied Microbiology, 53, 281, 10.2323/jgam.53.281 Weijman, 1979, Carbohydrate composition and taxonomy of Geotrichum, Trichosporon and allied genera, Antonie Van Leeuwenhoek, 45, 119, 10.1007/BF00400785 Weiss, 2004, Spotlights on Heterobasidiomycetes, 7 Weiss, 2014, Tremellomycetes and related groups, 349 Wells, 1994, Jelly fungi, then and now!, Mycologia, 86, 18, 10.2307/3760717 Wells, 2001, Heterobasidiomycetes, 85 Wiley, 2011 Wuczkowski, 2011, Description of Holtermanniella takashimae sp. nov., Holtermanniella gen. nov. and proposal of the order Holtermanniales to accommodate Tremellomycetous yeasts of the Holtermanniales clade, Internatonal Journal of Systematic and Evolutionary Microbiology, 61, 680, 10.1099/ijs.0.019737-0 Yarrow, 1998, Methods for the isolation, maintenance and identification of yeasts, 77 Yarza, 2014, Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences, Nature Review Microbiology, 12, 635, 10.1038/nrmicro3330 Yurkov, 2015, Yeast biogeography and the effects of species recognition approaches: the case study of widespread basidiomycetous species from brich forests in Russia, Current Microbiology, 70, 587, 10.1007/s00284-014-0755-9 Yurkov, 2012, Assessment of yeast diversity in soils under different management regions, Fungal Ecology, 5, 24, 10.1016/j.funeco.2011.07.004 Zang, 1999, A new taxon, Filobasidiella xianghuijun Zang, associated with Tremella fuciformis, Edible Fungi of China, 18, 43 Zhang, 2014, Cryptococcus fildesensis sp. nov. a psychrophilic basidiomycetous yeast isolated from Antarctic moss, International Journal of Systematic and Evolutionary Microbiology, 64, 675, 10.1099/ijs.0.054981-0