TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Genome Biology - Tập 14 Số 4 - Trang R36 - 2013
Daehwan Kim1, Geo Pertea2, Cole Trapnell3, Harold Pimentel4, Katherine S. Ryan5, Steven L. Salzberg6
1Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, 20742, USA
2Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, 733 N. Broadway, Baltimore, MD, 21205, USA
3Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA
4Department of Electrical Engineering and Computer Science, University of California, 101 Sproul Hall, Berkeley, CA, 94720, USA
5Illumina, Inc., 5200 Illumina Way, San Diego, CA 92122, USA
6Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, 615 N. Wolfe Street, Baltimore, MD, 21205, USA

Tóm tắt

Từ khóa


Tài liệu tham khảo

10.1038/nmeth.1226

10.1186/gb-2012-13-9-r51

10.1186/gb-2011-12-3-r22

10.1093/bioinformatics/btp120

10.1093/bioinformatics/btq057

10.1093/bioinformatics/bts635

10.1093/nar/gkq622

10.1101/gr.1429003

10.1016/j.cell.2012.04.041

10.1016/j.cell.2012.02.009

10.1101/gr.091827.109

10.1371/journal.pbio.0050254

10.1038/nmeth.1923

10.1186/gb-2011-12-8-r72

10.1186/gb-2009-10-3-r25

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Genome Biology

Tập 14 Số 4

R36

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