Tolerance of a protein helix to multiple alanine and valine substitutions
Tài liệu tham khảo
Lyu, 1990, Sidechain contributions to the stability of alpha-helical structure in peptides, Science, 250, 669, 10.1126/science.2237416
O'Neil, 1990, A thermodynamic scale for the helix-forming tendencies of the commonly-occurring amino acids, Science, 250, 646, 10.1126/science.2237415
Padmanabhan, 1990, Relative helix-forming tendencies of nonpolar amino acids, Nature, 344, 268, 10.1038/344268a0
Horovitz, 1992, Alpha-helix stability in proteins. II. Factors that influence stability at an internal position, J. Mol. Biol, 227, 560, 10.1016/0022-2836(92)90907-2
Blaber, 1993, Structural basis of amino acid alpha helix propensity, Science, 260, 1637, 10.1126/science.8503008
Blaber, 1994, Determination of α-helix propensity within the context of a folded protein, J. Mol. Biol, 235, 600, 10.1006/jmbi.1994.1016
Myers, 1997, A direct comparison of helix propensity in proteins and peptides, Proc. Natl Acad. Sci. USA, 94, 2833, 10.1073/pnas.94.7.2833
Rohl, 1996, Helix propagation and N-cap propensities of the amino acids measured in alanine-based peptides in 40 volume percent trifluoroethanol, Protein Sci, 5, 2623, 10.1002/pro.5560051225
Pabo, 1982, The operator-binding domain of λ repressor: structure and DNA recognition, Nature, 298, 443, 10.1038/298443a0
Beamer, 1992, Refined 1.8 å crystal structure of the λ repressor-operator complex, J. Mol. Biol, 227, 177, 10.1016/0022-2836(92)90690-L
Reidhaar-Olson, 1990, Functionally acceptable substitutions in two α-helical regions of λ repressor, Proteins, 7, 306, 10.1002/prot.340070403
Marqusee, 1994, Contributions of a salt bridge-hydrogen bond network to the stability of secondary and tertiary structure in λ-repressor, Protein Sci, 3, 2217, 10.1002/pro.5560031207
Gregoret, 1993, Additivity of mutant effects assessed by binomial mutagenesis, Proc. Natl Acad. Sci. USA, 90, 4246, 10.1073/pnas.90.9.4246
Lim, 1991, The role of internal packing interactions in determining the structure and stability of a protein, J. Mol. Biol, 219, 359, 10.1016/0022-2836(91)90570-V
Pinker, 1993, Effects of alanine substitutions in α-helices of sperm whale myoglobin on protein stability, Protein Sci, 2, 1099, 10.1002/pro.5560020704
Zhang, 1991, Toward a simplification of the protein folding problem: a stabilizing polyalanine α-helix engineered in T4 lysozyme, Biochemistry, 30, 2012, 10.1021/bi00222a001
Heinz, 1992, Folding and function of a T4 lysozyme containing ten consecutive alanines illustrates the redundancy of information in amino acid sequence, Proc. Natl Acad. Sci. USA, 89, 3751, 10.1073/pnas.89.9.3751
Zhang, 1992, Multiple alanine replacements within α-helix 126-134 of T4 lysozyme have independent, additive effects on both structure and stability, Protein Sci, 1, 761, 10.1002/pro.5560010608
Johansson, 1994, The NMR structure of the pulmonary surfactant-associated polypeptide SP-C in an apolar solvent contains a valyl-rich α-helix, Biochemistry, 33, 6015, 10.1021/bi00185a042
Meiering, 1992, Effect of active site residues in barnase on activity and stability, J. Mol. Biol, 225, 585, 10.1016/0022-2836(92)90387-Y
Shoichet, 1995, A relationship between protein stability and protein function, Proc. Natl Acad. Sci. USA, 92, 452, 10.1073/pnas.92.2.452
Gerstein, 1995, The volume of atoms on the protein surface: calculated from simulation, using Voronoi polyhedra, J. Mol. Biol, 249, 955, 10.1006/jmbi.1995.0351
Bowie, 1990, Deciphering the message in protein sequences: tolerance to amino acid substitutions, Science, 247, 1306, 10.1126/science.2315699
Minor, 1996, Context-dependent secondary structure formation of a designed protein sequence, Nature, 380, 730, 10.1038/380730a0
Muñoz, 1995, The distribution of alpha-helix propensity along the polypeptide chain is not conserved in proteins from the same family, Protein Sci, 4, 1577, 10.1002/pro.5560040816
Lim, 1992, Structural and energetic consequences of disruptive mutations in a protein core, Biochemistry, 31, 4324, 10.1021/bi00132a025
Cormack, 1993, Regional codon randomization: defining a TATA-binding protein surface required for RNA polymerase III transcription, Science, 262, 244, 10.1126/science.8211143
Lee, 1971, The interpretation of proteins structures: estimation of static accessibility, J. Mol. Biol, 55, 379, 10.1016/0022-2836(71)90324-X
Spolar, 1992, Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water, Biochemistry, 31, 3947, 10.1021/bi00131a009
Weiss, 1987, Dimerization of the operator binding domain of phage lambda repressor, Biochemistry, 26, 897, 10.1021/bi00377a034
Santoro, 1988, Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants, Biochemistry, 27, 8062, 10.1021/bi00421a014
Kraulis, 1991, MOLSCRIPT - a program to produce both detailed and schematic plots of protein structures, J. Appl. Crystallogr, 24, 946, 10.1107/S0021889891004399