Three-dimensional Microorganization of the Soil–Root–Microbe System

Microbial Ecology - Tập 52 - Trang 151-158 - 2006
Debbie S. Feeney1, John W. Crawford1, Tim Daniell2, Paul D. Hallett2, Naoise Nunan3, Karl Ritz4, Mark Rivers5, Iain M. Young1
1Scottish Informatics Mathematics Biology and Statistics (SIMBIOS) Centre, University of Abertay, Dundee, UK
2Scottish Crop Research Institute, Dundee, UK
3CNRS, Laboratoire de Biogéochimie des Milieux Continentaux, Bâtiment EGER, aîle B, INRA INA-PG, Thiverval-Grignon, France
4National Soil Resources Institute, Cranfield University, Bedfordshire, UK
5APS/CARS-CAT, The University of Chicago, c/o Argonne National Laboratory, Argonne, USA

Tóm tắt

Soils contain the greatest reservoir of biodiversity on Earth, and the functionality of the soil ecosystem sustains the rest of the terrestrial biosphere. This functionality results from complex interactions between biological and physical processes that are strongly modulated by the soil physical structure. Using a novel combination of biochemical and biophysical indicators and synchrotron microtomography, we have discovered that soil microbes and plant roots microengineer their habitats by changing the porosity and clustering properties (i.e., spatial correlation) of the soil pores. Our results indicate that biota act to significantly alter their habitat toward a more porous, ordered, and aggregated structure that has important consequences for functional properties, including transport processes. These observations support the hypothesis that the soil–plant–microbe complex is self-organized.

Tài liệu tham khảo

Crawford, JW, Harris, JA, Ritz, K, Young, IM (2005) Towards an evolutionary ecology of life in soil. Trends Ecol Evol 20: 81–86 Papke, RT, Ward, DM (2004) The importance of physical isolation to microbial diversification. FEMS Microbiol Ecol 48: 293–303 Fenchel, T (2003) Biogeography for bacteria. Science 301: 925–926 Tisdall, JM, Oades, JM (1982) Organic matter and water stable aggregates in soil. Soil Sci 23: 821–825 Kaiser, K (2004) Wounding earth's fragile skin. Science 304: 1616–1618 Denef, K, Six, J, Merckx, R, Paustian, K (2004) Carbon sequestration in microaggregates of no-tillage soils with different clay mineralogy. Soil Sci Soc Am J 68: 1935–1944 Six, J, Ogle, SM, Breidt, FJ, Conant, RT, Mosier, AR, Paustian, K (2004) The potential to mitigate global warming with no-tillage is only realized when practiced in the long-term. Glob Chang Biol 10: 155–160 Boussuyt, H, Six, Hendrix, PF (2002) Aggregate protected carbon in no-tillage and conventional tillage agroecosystems using 14C labeled plant residue. Soil Sci Soc J 66: 1965–1973 Foster, RC (1998) Microenvironments of soil organisms. Biol Fertil Soils 6: 89–203 Bruand, A, Cousin, I, Nicoullaud, B, Duval, O, Begon, JC (1996) Backscattered electron scanning images of soil porosity for analysing soil compaction around roots. Soil Sci Soc Am J 60: 895–901 Watt, M, McCully, ME, Canny, MJ (1994) Formation and stabilisation of rhizosheaths of Zea mays L. Effect of soil water content. Plant Physiol 106: 179–186 Martens, DA, Frankenberger, WT (1992) Decomposition of bacteria polymers in soil and their influence on soil structure. Biol Fertil Soils 13: 65–73 Ritz, K, Young, IM (2004) Interactions between soil structure and fungi. Mycologist 18: 52–59 Hallett, PD, Nunan, NN, Douglas, JT, Young, IM (2004) Millimeter-scale spatial variability in soil water sorptivity: scale, surface elevation and subcritical effects. Soil Sci Soc Am J 68: 352–358 Read, DB, Bengough, AG, Gregory, PJ, Crawford, JW, Robinson, D, Scrimgeour, CM, Young, IM, Zhang, G, Zhang, Z (2003) Plant roots release phospholipids surfactants that modify the physical and chemical properties of soil. New Phytol 157: 315–317 Crawford, JW, Verrall, S, Young, IM (1997) The origin and loss of fractal scaling in simulated soil aggregates. Eur J Soil Sci 48: 643–650 Favis-Mortlock, DA (1998) Self-organising dynamic systems approach to the simulation of rill initiation and development on hillslopes. Comput Geosci 24: 353–372 Stahl, PD, Parkin, B (1996) Relationship of soil ergosterol concentration and fungal biomass. Soil Biol Biochem 28: 847–855 Ruzicka, S, Norman, MDO, Harris, JA (1995) Rapid ultrasonic method to determine ergosterol concentration in soil. Soil Biol Biochem 27: 1215 White, NA, Hallett, PD, Feeney, D, Palfreyman, JW, Ritz, K (2000) Changes to water repellence of soil caused by the growth of white-rot fungi: studies using a novel microcosm system. FEMS Microbiol Lett 184: 73–77 Nunan, N, Ritz, K, Rivers, M, Feeney, DS, Young, IM (2006) Investigating microbial micro-habitat structure using X-ray computed tomography. Geoderma (in press) Wright, SF, Upadhyaya, A (1996) A survey of soils for aggregate stability and glomalin a glycoprotein of arbuscular mycorrhizal fungi. Plant Soil 198: 97–107 Otten, W, Harris, K, Young, IM, Ritz, K, Gilligan, CA (2004) Preferential spread of the pathogenic fungus Rhizoctonia solani through structured soil. New Phytol 151: 203–210 Harris, K, Young, IM, Gilligan, CA, Otten, W, Ritz, K (2003) Effect of bulk density on the spatial organisation of the fungus Rhizoctonia solani in soil. FEMS Microbiol Ecol 44: 45–56 Murray, AB, Paola, C (2004) A cellular model of braided rivers. Nature 371: 54–57 Levin, SA (1998) Ecosystems and the biosphere as complex adaptive systems. Ecosystems 1: 431