Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise

Systematic and Applied Microbiology - Tập 39 - Trang 440-444 - 2016
Cécile Dalmasso1,2,3, Philippe Oger4, Gwendoline Selva1,2,3, Damien Courtine1,2,3, Stéphane L’Haridon1,2,3, Alexandre Garlaschelli1,2,3, Erwan Roussel1,2,3, Junichi Miyazaki5, Julie Reveillaud1,2,3, Mohamed Jebbar1,2,3, Ken Takai5, Lois Maignien1,2,3, Karine Alain1,2,3
1Université de Bretagne Occidentale (UBO, UEB), Institut Universitaire Européen de la Mer (IUEM)—UMR 6197, Laboratoire de Microbiologie des Environnements Extrêmes (LM2E), Place Nicolas Copernic, F-29280 Plouzané, France
2CNRS, IUEM—UMR 6197, Laboratoire de Microbiologie des Environnements Extrêmes (LM2E), Place Nicolas Copernic, F-29280 Plouzané, France
3Ifremer, UMR 6197, Laboratoire de Microbiologie des Environnements Extrêmes (LM2E), Technopôle Pointe du diable, F-29280 Plouzané, France
4Université de Lyon, INSA Lyon, CNRS UMR 5240, 11 Avenue Jean Capelle, F-69621 Villeurbanne, France
5Department of Subsurface Geobiological Analysis and Research (D-SUGAR), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, 237-0061, Japan

Tài liệu tham khảo

Anderson, 2015, Biogeography and ecology of the rare and abundant microbial lineages in deep-sea hydrothermal vents, FEMS Microbiol. Ecol., 91, 1, 10.1093/femsec/fiu016 Auch, 2010, Digital DNA–DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison, Stand. Genom. Sci., 2, 117, 10.4056/sigs.531120 Auch, 2010, Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs, Stand. Genom. Sci., 2, 142, 10.4056/sigs.541628 Cario, 2016, Molecular chaperone accumulation as a function of stress evidences adaptation to high hydrostatic pressure in the piezophilic archaeon Thermococcus barophilus, Sci. Rep., 6, 29483, 10.1038/srep29483 Duffaud, 1998, Isolation and characterization of Thermococcus barossii, sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal vent flange formation, Syst. Appl. Microbiol., 21, 40, 10.1016/S0723-2020(98)80007-6 Fiala, 1986, Pyrococcus furiosus sp. nov. represents a novel genus of marine heterotrophic archaebacteria growing optimally at 100°C, Arch. Microbiol., 145, 56, 10.1007/BF00413027 Flores, 2011, Hydrothermal environments, marine, 456 German, 2010, Diverse styles of submarine venting on the ultraslow spreading Mid-Cayman Rise, Proc. Natl. Acad. Sci., 107, 14020, 10.1073/pnas.1009205107 Guindon, 2010, New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0, Syst. Biol., 59, 307, 10.1093/sysbio/syq010 Jebbar, 2015, Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes, Extremophiles, 19, 721, 10.1007/s00792-015-0760-3 Kim, 2012, Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species, Int. J. Syst. Evol. Microbiol., 62, 716, 10.1099/ijs.0.038075-0 Kobayashi, 1994, Thermococcus profundus sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent, Syst. Appl. Microbiol., 17, 232, 10.1016/S0723-2020(11)80013-5 Kuwabara, 2005, Thermococcus coalescens sp. nov., a cell-fusing hyperthermophilic archaeon from Suiyo Seamount, Int. J. Syst. Evol. Microbiol., 55, 2507, 10.1099/ijs.0.63432-0 Marteinsson, 1999, A stress protein is induced in the deep-sea barophilic hyperthermophile Thermococcus barophilus when grown under atmospheric pressure, Extremophiles, 3, 277, 10.1007/s007920050128 Orcutt, 2011, Microbial ecology of the dark ocean above, at, and below the seafloor, Microbiol. Mol. Biol. Rev., 75, 361, 10.1128/MMBR.00039-10 Reveillaud, 2016, Subseafloor microbial communities in hydrogen-rich vent fluids from hydrothermal systems along the Mid-Cayman Rise, Environ. Microbiol., 18, 1970, 10.1111/1462-2920.13173 Richter, 2015, JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison, Bioinformatics, btv681 Saitou, 1987, The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406 Seob, 2006, Thermococcus onnurineus sp. nov., a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent area at the PACMANUS field, J. Microbiol. Biotechnol., 16, 1826 Sokolova, 2009, Diversity and ecophysiological features of thermophilic carboxydotrophic anaerobes: thermophilic carboxydotrophic anaerobes, FEMS Microbiol. Ecol., 68, 131, 10.1111/j.1574-6941.2009.00663.x Takai, 2000, Palaeococcus ferrophilus gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney, Int. J. Syst. Evol. Microbiol., 50, 489, 10.1099/00207713-50-2-489 Vallenet, 2013, MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data, Nucleic Acids Res., 41, D636, 10.1093/nar/gks1194 Vallenet, 2009, MicroScope: a platform for microbial genome annotation and comparative genomics, Database J. Biol. Databases Curation, 2009 Wayne, 1987, Report of the ad hoc committee on reconciliation of approaches to bacterial systematics, Int. J. Syst. Evol. Microbiol., 37, 463, 10.1099/00207713-37-4-463 Zillig, 1983, The archaebacterium Thermococcus celer represents, a novel genus within the thermophilic branch of the archaebacteria, Syst. Appl. Microbiol., 4, 88, 10.1016/S0723-2020(83)80036-8