The structure of microtubule motor proteins

Advances in Protein Chemistry - Tập 71 - Trang 299-344 - 2005
A. Marx, J. Müller, E. Mandelkow

Tài liệu tham khảo

Al‐Bassam, 2003, Distinct conformations of the kinesin Unc104 neck regulate a monomer to dimer motor transition, J. Cell Biol., 163, 743, 10.1083/jcb.200308020 Anson, 1996, Myosin motors with artificial lever arms, EMBO J., 15, 6069, 10.1002/j.1460-2075.1996.tb00995.x Asenjo, 2003, Configuration of the two kinesin motor domains during ATP hydrolysis, Nat. Struct. Biol., 10, 836, 10.1038/nsb984 Berger, 1995, Predicting coiled‐coils by use of pairwise residue correlations, Proc. Natl. Acad. Sci. USA, 92, 8259, 10.1073/pnas.92.18.8259 Berman, 2000, The Protein Data Bank, Nucleic Acids Res., 28, 235, 10.1093/nar/28.1.235 Brady, 1985, A novel brain ATPase with properties expected for the fast axonal transport motor, Nature, 317, 73, 10.1038/317073a0 Burgess, 2004, The structure of dynein‐c by negative stain electron microscopy, J. Struct. Biol., 146, 205, 10.1016/j.jsb.2003.10.005 Conibear, 2003, Myosin cleft movement and its coupling to actomyosin dissociation, Nat. Struct. Biol., 10, 831, 10.1038/nsb986 Coureux, 2003, A structural state of the myosin V motor without bound nucleotide, Nature, 425, 419, 10.1038/nature01927 Das, 1998, The structure of the tetratricopeptide repeats of protein phosphatase 5: Implications for TPR‐mediated protein‐protein interactions, EMBO J., 17, 1192, 10.1093/emboj/17.5.1192 Eshel, 1995, Functional dissection of the dynein motor domain, Cell Motil. Cytoskeleton, 32, 133, 10.1002/cm.970320213 Fan, 2001, Antibodies to cytoplasmic dynein heavy chain map the surface and inhibit motility, J. Mol. Biol., 307, 1317, 10.1006/jmbi.2001.4566 Garcia‐Saez, 2004, Crystal structure of the motor domain of the human kinetochore protein CENP‐E, J. Mol. Biol., 340, 1107, 10.1016/j.jmb.2004.05.053 Guex, 1997, SWISS‐MODEL and the Swiss‐PdbViewer: An environment for comparative protein modeling, Electrophoresis, 18, 2714, 10.1002/elps.1150181505 Gulick, 1998, X‐ray crystal structure of the yeast Kar3 motor domain complexed with Mg.ADP to 2.3 A resolution, Biochemistry, 37, 1769, 10.1021/bi972504o Hirose, 1999, Congruent docking of dimeric kinesin and ncd into three‐dimensional electron cryomicroscopy maps of microtubule‐motor ADP complexes, Mol. Biol. Cell, 10, 2063, 10.1091/mbc.10.6.2063 Hoenger, 1998, Image reconstructions of microtubules decorated with monomeric and dimeric kinesins: Comparison with x‐ray structure and implications for motility, J. Cell Biol., 141, 419, 10.1083/jcb.141.2.419 Hoenger, 2000, A new look at the microtubule binding patterns of dimeric kinesins, J. Mol. Biol., 297, 1087, 10.1006/jmbi.2000.3627 Holmes, 2003, Electron cryo‐microscopy shows how strong binding of myosin to actin releases nucleotide, Nature, 425, 423, 10.1038/nature02005 Holmes, 2000, The structural basis of muscle contraction, Philos. Trans. R. Soc. Lond. B Biol. Sci., 355, 419, 10.1098/rstb.2000.0583 Houdusse, 2000, Three conformational states of scallop myosin S1, Proc. Natl. Acad. Sci. USA, 97, 11238, 10.1073/pnas.200376897 Kabsch, 1983, Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features, Biopolymers, 22, 2577, 10.1002/bip.360221211 Kikkawa, 2000, 15 A resolution model of the monomeric kinesin motor, KIF1A, Cell, 100, 241, 10.1016/S0092-8674(00)81562-7 Kikkawa, 2001, Switch‐based mechanism of kinesin motors, Nature, 411, 439, 10.1038/35078000 King, 2000, AAA domains and organisation of the dynein motor unit, J. Cell Sci., 113, 2521, 10.1242/jcs.113.14.2521 Klopfenstein, 2002, Role of phosphatidylinositol(4,5)bisphosphate organisation in membrane transport by the Unc104 kinesin motor, Cell, 109, 347, 10.1016/S0092-8674(02)00708-0 Klumpp, 2003, A kinesin switch I arginine to lysine mutation rescues microtubule function, J. Biol. Chem., 278, 39059, 10.1074/jbc.M304250200 Kollmar, 2002, Crystal structure of the motor domain of a class‐I myosin, EMBO J., 21, 2517, 10.1093/emboj/21.11.2517 Kozielski, 1998, A model of the microtubule‐kinesin complex based on electron cryomicroscopy and X‐ray crystallograhpy, Curr Biol., 8, 191, 10.1016/S0960-9822(98)70083-1 Kozielski, 1999, The crystal structure of the minus‐end‐directed microtubule motor protein ncd reveals variable dimer conformations, Structure Fold. Des., 7, 1407, 10.1016/S0969-2126(00)80030-1 Kozielski, 1997, The crystal structure of dimeric kinesin and implications for microtubule‐dependent motility, Cell, 91, 985, 10.1016/S0092-8674(00)80489-4 Kozielski, 2001, The overall conformation of conventional kinesins studied by small angle x‐ray and neutron scattering, J. Biol. Chem., 276, 1267, 10.1074/jbc.M007169200 Kull, 1996, Crystal structure of the kinesin motor domain reveals a structural similarity to myosin, Nature, 380, 550, 10.1038/380550a0 Kull, 1998, The case for a common ancestor: Kinesin and myosin motor proteins and G proteins, J. Muscle Res. Cell Motil., 19, 877, 10.1023/A:1005489907021 Laskowski, 1993, PROCHECK: A program to check the stereochemical quality of protein structures, J. Appl. Cryst., 26, 283, 10.1107/S0021889892009944 Lattanzi, 2004, Coarse grained models: The kinetics of motor proteins, Comput. Mater. Sci., 30, 172, 10.1016/j.commatsci.2004.01.025 Lawrence, 2004, A standardised kinesin nomenclature, J. Cell Biol., 167, 19, 10.1083/jcb.200408113 Lee‐Eiford, 1986, Specific cleavage of dynein heavy chains by ultraviolet irradiation in the presence of ATP and vanadate, J. Biol. Chem., 261, 2337, 10.1016/S0021-9258(17)35941-0 Leibler, 1993, Porters versus rowers: A unified stochastic model of motor proteins, J. Cell Biol., 121, 1357, 10.1083/jcb.121.6.1357 Lowe, 2001, Refined structure of αβ‐tubulin at 3.5 A resolution, J. Mol. Biol., 313, 1045, 10.1006/jmbi.2001.5077 Mackey, 2003, The ATPase cross‐bridge cycle of the Kar3 motor domain: implications for single head motility, J. Biol. Chem., 278, 3527, 10.1074/jbc.M206219200 Mandelkow, 2002, Kinesin motors and disease, Trends Cell Biol., 12, 585, 10.1016/S0962-8924(02)02400-5 Mayer, 1999, Small molecule inhibitor of mitotic spindle bipolarity identified in a phenotype‐based screen, Science, 286, 971, 10.1126/science.286.5441.971 Mocz, 2001, Model for the motor component of dynein heavy chain based on homology to the AAA family of oligomeric ATPases, Structure (Camb.), 9, 93, 10.1016/S0969-2126(00)00557-8 Neuwald, 1999, AAA+: A class of chaperone‐like ATPases associated with the assembly, operation, and disassembly of protein complexes, Genome Res., 9, 27 Nitta, 2004, KIF1A alternately uses two loops to bind microtubules, Science, 305, 678, 10.1126/science.1096621 Nogales, 1998, Structure of the αβ tubulin dimer by electron crystallography, Nature, 391, 199, 10.1038/34465 Ogawa, 2004, A common mechanism for microtubule destabilizers‐M type kinesins stabilize curling of the protofilament using the class‐specific neck and loops, Cell, 116, 591, 10.1016/S0092-8674(04)00129-1 Okada, 2000, Mechanism of the single‐headed processivity: Diffusional anchoring between the K‐loop of kinesin and the C terminus of tubulin, Proc. Natl. Acad. Sci. USA, 97, 640, 10.1073/pnas.97.2.640 Onishi, 1998, Functional transitions in myosin: Formation of a critical salt‐bridge and transmission of effect to the sensitive tryptophan, Proc. Natl. Acad. Sci. USA, 95, 6653, 10.1073/pnas.95.12.6653 Reubold, 2003, A structural model for actin‐induced nucleotide release in myosin, Nat. Struct. Biol., 10, 826, 10.1038/nsb987 Rice, 1999, A structural change in the kinesin motor protein that drives motility, Nature, 402, 778, 10.1038/45483 Sablin, 1998, Direction determination in the minus‐end‐directed kinesin motor ncd, Nature, 395, 813, 10.1038/27463 Sablin, 1996, Crystal structure of the motor domain of the kinesin‐related motor ncd, Nature, 380, 555, 10.1038/380555a0 Sack, 1999, Motor proteins of the kinesin family: Structures, variations, and nucleotide binding sites, Eur. J. Biochem., 262, 1, 10.1046/j.1432-1327.1999.00341.x Sack, 1997, X‐ray structure of motor and neck domains from rat brain kinesin, Biochemistry, 36, 16155, 10.1021/bi9722498 Sakakibara, 1999, Inner‐arm dynein c of Chlamydomonas flagella is a single‐headed processive motor, Nature, 400, 586, 10.1038/23066 Sakowicz, 2004, Antitumor activity of a kinesin inhibitor, Cancer Res., 64, 3276, 10.1158/0008-5472.CAN-03-3839 Sale, 1988, Isolated β‐heavy chain subunit of dynein translocates microtubules in vitro, J. Cell Biol., 107, 1793, 10.1083/jcb.107.5.1793 Schmidt, 2004, Bionanomechanical systems, Annual Rev. Materials Res., 34, 315, 10.1146/annurev.matsci.34.040203.115827 Seeberger, 2000, Conformational preferences of a synthetic 30mer peptide from the interface between the neck and stalk regions of kinesin, Biochemistry, 39, 12558, 10.1021/bi000719j Shipley, 2004, Structure of a kinesin microtubule depolymerization machine, EMBO J., 23, 1422, 10.1038/sj.emboj.7600165 Sindelar, 2002, Two conformations in the human kinesin power stroke defined by x‐ray crystallography and EPR spectroscopy, Nat. Struct. Biol., 9, 844 Skiniotis, 2003, Nucleotide‐induced conformations in the neck region of dimeric kinesin, EMBO J., 22, 1518, 10.1093/emboj/cdg164 Song, 2001, Structure of a fast kinesin: Implications for ATPase mechanism and interactions with microtubules, EMBO J., 20, 6213, 10.1093/emboj/20.22.6213 Steinberg, 1996, Characterisation of the biophysical and motility properties of kinesin from the fungus, Neurospora crassa. J. Biol. Chem., 271, 7516, 10.1074/jbc.271.13.7516 Stock, 1999, Formation of the compact conformer of kinesin requires a COOH‐terminal heavy chain domain and inhibits microtubule‐stimulated ATPase activity, J. Biol. Chem., 274, 14617, 10.1074/jbc.274.21.14617 Tomishige, 2002, Conversion of Unc104/KIF1A kinesin into a processive motor after dimerisation, Science, 297, 2263, 10.1126/science.1073386 Tomishige, 2000, Controlling kinesin by reversible disulfide cross‐linking: Identifying the motility‐producing conformational change, J. Cell Biol., 151, 1081, 10.1083/jcb.151.5.1081 Tripet, 1997, Demonstration of coiled‐coil interactions within the kinesin neck region using synthetic peptides, J. Biol. Chem., 272, 8946, 10.1074/jbc.272.14.8946 Tsiavaliaris, 2004, Molecular engineering of a backwards‐moving myosin motor, Nature, 427, 558, 10.1038/nature02303 Turner, 2001, Crystal structure of the mitotic spindle kinesin Eg5 reveals a novel conformation of the neck‐linker, J. Biol. Chem., 276, 25496, 10.1074/jbc.M100395200 Uyeda, 1996, The neck region of the myosin motor domain acts as a lever arm to generate movement, Proc. Natl. Acad. Sci. USA, 93, 4459, 10.1073/pnas.93.9.4459 Vale, 1997, The design plan of kinesin motors, Ann. Rev. Cell Dev. Biol., 13, 745, 10.1146/annurev.cellbio.13.1.745 Vale, 1985, Identification of a novel force‐generating protein, kinesin, involved in microtubule‐based motility, Cell, 42, 39, 10.1016/S0092-8674(85)80099-4 Vale, 1989, Microtubule translocation properties of intact and proteolytically digested dyneins from Tetrahymena cilia, J. Cell Biol., 108, 2327, 10.1083/jcb.108.6.2327 Vallee, 2004, Dynein: An ancient motor protein involved in multiple modes of transport, J. Neurobiol., 58, 189, 10.1002/neu.10314 Veigel, 1999, The motor protein myosin‐I produces its working stroke in two steps, Nature, 398, 530, 10.1038/19104 Vinogradova, 2004, Crystal structure of kinesin regulated by Ca2+/calmodulin, J. Biol. Chem., 279, 23504, 10.1074/jbc.M400741200 Wendt, 2002, Microscopic evidence for a minus‐end‐directed power stroke in the kinesin motor ncd, EMBO J., 21, 5969, 10.1093/emboj/cdf622 Woehlke, 1997, Microtubule interaction site of the kinesin motor, Cell, 90, 207, 10.1016/S0092-8674(00)80329-3 Wood, 1997, CENP‐E is a plus end‐directed kinetochore motor required for metaphase chromosome alignment, Cell, 91, 357, 10.1016/S0092-8674(00)80419-5 Xiang, 2003, Cytoskeleton and motor proteins in filamentous fungi, Curr. Opin. Microbiol., 6, 628, 10.1016/j.mib.2003.10.009 Yan, 2004, Inhibition of a mitotic motor protein: Where, how, and conformational consequences, J. Mol. Biol., 335, 547, 10.1016/j.jmb.2003.10.074 Yun, 2003, Rotation of the stalk/neck and one head in a new crystal structure of the kinesin motor protein, Ncd, EMBO J., 22, 5382, 10.1093/emboj/cdg531 Yun, 2001, A structural pathway for activation of the kinesin motor ATPase, EMBO J., 20, 2611, 10.1093/emboj/20.11.2611 Zheng, 2003, A comparative study of motor‐protein motions by using a simple elastic‐network model, Proc. Natl. Acad. Sci. USA, 100, 13253, 10.1073/pnas.2235686100