The shikimate pathway regulates programmed cell death

Abe, 2012, Genome sequencing reveals agronomically important loci in rice using mutmap, Nat. Biotechnol., 30, 174, 10.1038/nbt.2095 Benbrook, 2016, Trends in glyphosate herbicide use in the United States and globally, Environ. Sci. Eur., 28, 3, 10.1186/s12302-016-0070-0 Bi, 2021, The ZAR1 resistosome is a calcium-permeable channel triggering plant immune signaling, Cell, 184, 3528, 10.1016/j.cell.2021.05.003 Bruggeman, 2015, To die or not to die? Lessons from lesion mimic mutants, Front. Plant Sci., 6, 24, 10.3389/fpls.2015.00024 Cao, 1997, The Arabidopsis NPR1 gene that controls systemic acquired resistance encodes a novel protein containing ankyrin repeats, Cell, 88, 57, 10.1016/S0092-8674(00)81858-9 Chen, 2013, A novel integrated method for large-scale detection, identification, and quantification of widely targeted metabolites: application in the study of rice metabolomics, Mol. Plant, 6, 1769, 10.1093/mp/sst080 Cho, 2006, Regulatory functions of nuclear hexokinase1 complex in glucose signaling, Cell, 127, 579, 10.1016/j.cell.2006.09.028 Coll, 2010, Arabidopsis type I metacaspases control cell death, Science, 330, 1393, 10.1126/science.1194980 Dietrich, 1994, Arabidopsis mutants simulating disease resistance response, Cell, 77, 565, 10.1016/0092-8674(94)90218-6 Duke, 2008, Glyphosate: a once-in-a-century herbicide, Pest Manag. Sci., 64, 319, 10.1002/ps.1518 Eremina, 2015, ENO2 activity is required for the development and reproductive success of plants, and is feedback-repressed by AtMBP-1, Plant J., 81, 895, 10.1111/tpj.12775 Gout, 1992, Effect of glyphosate on plant cell metabolism. 31P and 13C NMR studies, Biochimie, 74, 875, 10.1016/0300-9084(92)90071-L Huang, 2018, Modulation of plant salicylic acid-associated immune responses via glycosylation of dihydroxybenzoic acids, Plant Physiol., 176, 3103, 10.1104/pp.17.01530 Jacob, 2021, Plant “helper” immune receptors are Ca2+-permeable nonselective cation channels, Science, 373, 420, 10.1126/science.abg7917 Jones, 2006, The plant immune system, Nature, 444, 323, 10.1038/nature05286 Jones, 2016, Live-cell fluorescence imaging to investigate the dynamics of plant cell death during infection by the rice blast fungus magnaporthe oryzae, BMC Plant Biol., 16, 69, 10.1186/s12870-016-0756-x Kaurilind, 2015, A genetic framework for H2O2 induced cell death in Arabidopsis thaliana, BMC Genom., 16, 837, 10.1186/s12864-015-1964-8 Kim, 2019, Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype, Nat. Biotechnol., 37, 907, 10.1038/s41587-019-0201-4 Knappe, 2003, Characterization of two functional phosphoenolpyruvate/phosphate translocator (PPT) genes in Arabidopsis-- AtPPT1 may be involved in the provision of signals for correct mesophyll development, Plant J., 36, 411, 10.1046/j.1365-313X.2003.01888.x Landoni, 2013, A mutation in the FZL gene of Arabidopsis causing alteration in chloroplast morphology results in a lesion mimic phenotype, J. Exp. Bot., 64, 4313, 10.1093/jxb/ert237 Lorrain, 2003, Lesion mimic mutants: keys for deciphering cell death and defense pathways in plants?, Trends Plant Sci., 8, 263, 10.1016/S1360-1385(03)00108-0 Lukowitz, 2000, Positional cloning in Arabidopsis. Why it feels good to have a genome initiative working for you, Plant Physiol., 123, 795, 10.1104/pp.123.3.795 Lv, 2019, Uncoupled expression of nuclear and plastid photosynthesis-associated genes contributes to cell death in a lesion mimic mutant, Plant Cell, 31, 210, 10.1105/tpc.18.00813 Ma, 2016, Arabidopsis FHY3 and FAR1 regulate light-induced myo-inositol biosynthesis and oxidative stress responses by transcriptional activation of MIPS1, Mol. Plant, 9, 541, 10.1016/j.molp.2015.12.013 Maeda, 2012, The shikimate pathway and aromatic amino acid biosynthesis in plants, Annu. Rev. Plant Biol., 63, 73, 10.1146/annurev-arplant-042811-105439 Mandal, 2012, Oleic acid-dependent modulation of NITRIC OXIDE ASSOCIATED1 protein levels regulates nitric oxide-mediated defense signaling in Arabidopsis, Plant Cell, 24, 1654, 10.1105/tpc.112.096768 Meng, 2009, Crosstalks between myo-inositol metabolism, programmed cell death and basal immunity in Arabidopsis, PLoS ONE, 4, 10.1371/journal.pone.0007364 op den Camp, 2003, Rapid induction of distinct stress responses after the release of singlet oxygen in Arabidopsis, Plant Cell, 15, 2320, 10.1105/tpc.014662 Prabhakar, 2009, Molecular and functional characterization of the plastid-localized phosphoenolpyruvate enolase (ENO1) from Arabidopsis thaliana, FEBS Lett., 583, 983, 10.1016/j.febslet.2009.02.017 Przybyla, 2008, Enzymatic, but not non-enzymatic, 1O2-mediated peroxidation of polyunsaturated fatty acids forms part of the EXECUTER1-dependent stress response program in the flu mutant of Arabidopsis thaliana, Plant J., 54, 236, 10.1111/j.1365-313X.2008.03409.x Radojicic, 2018, Salicylic acid: a double-edged sword for programed cell death in plants, Front. Plant Sci., 9, 1133, 10.3389/fpls.2018.01133 Roos, 2016, DNA damage and the balance between survival and death in cancer biology, Nat. Rev. Cancer, 16, 20, 10.1038/nrc.2015.2 Schonbrunn, 2001, Interaction of the herbicide glyphosate with its target enzyme 5-enolpyruvylshikimate 3-phosphate synthase in atomic detail, Proc. Natl. Acad. Sci. U. S. A., 98, 1376, 10.1073/pnas.98.4.1376 Schulz, 1990, Glyphosate transport and early effects on shikimate metabolism and its compartmentation in sink leaves of tomato and spinach plants, Z. Naturforsch. C Biosci., 45, 529, 10.1515/znc-1990-0539 Shaner, 2005, A rapid in vivo shikimate accumulation assay with excised leaf discs, Weed Sci., 53, 769, 10.1614/WS-05-009R.1 Singh, 2006, Structure of Arabidopsis dehydroquinate dehydratase-shikimate dehydrogenase and implications for metabolic channeling in the shikimate pathway, Biochemistry, 45, 7787, 10.1021/bi060366+ Steinrücken, 1980, The herbicide glyphosate is a potent inhibitor of 5-enolpyruvylshikimic acid-3-phosphate synthase, Biochem. Biophys. Res. Commun., 94, 1207, 10.1016/0006-291X(80)90547-1 Templeton, 2004, A renaissance of metabolite sensing and signaling: from modular domains to riboswitches, Plant Cell, 16, 2252, 10.1105/tpc.104.160930 Thordal-Christensen, 1997, Subcellular localization of H2O2 in plants. H2O2 accumulation in papillae and hypersensitive response during the barley-powdery mildew interaction, Plant J., 11, 1187, 10.1046/j.1365-313X.1997.11061187.x Valandro, 2020, Programmed cell death (PCD) control in plants: new insights from the Arabidopsis thaliana deathosome, Plant Sci., 299, 110603, 10.1016/j.plantsci.2020.110603 Van Hautegem, 2015, Only in dying, life: programmed cell death during plant development, Trends Plant Sci., 20, 102, 10.1016/j.tplants.2014.10.003 Wachsman, 2017, A simple pipeline for mapping point mutations, Plant Physiol., 174, 1307, 10.1104/pp.17.00415 Wildermuth, 2001, Isochorismate synthase is required to synthesize salicylic acid for plant defence, Nature, 414, 562, 10.1038/35107108 Yan, 2013, Salicylic acid activates DNA damage responses to potentiate plant immunity, Mol. Cell, 52, 602, 10.1016/j.molcel.2013.09.019 Yang, 2012, A chloroplast envelope membrane protein containing a putative LrgB domain related to the control of bacterial death and lysis is required for chloroplast development in Arabidopsis thaliana, New Phytol., 193, 81, 10.1111/j.1469-8137.2011.03867.x Zhao, 2018, Malate transported from chloroplast to mitochondrion triggers production of ROS and PCD in Arabidopsis thaliana, Cell Res., 28, 448, 10.1038/s41422-018-0024-8 Zhi, 2019, Loss of fumarylacetoacetate hydrolase causes light-dependent increases in protochlorophyllide and cell death in Arabidopsis, Plant J., 98, 622, 10.1111/tpj.14235 Zulet-Gonzalez, 2020, Increased glyphosate-induced gene expression in the shikimate pathway is abolished in the presence of aromatic amino acids and mimicked by shikimate, Front. Plant Sci., 11, 459, 10.3389/fpls.2020.00459