The new genus Auritella from Africa and Australia (Inocybaceae, Agaricales): molecular systematics, taxonomy and historical biogeography

Mycological Progress - Tập 5 Số 1 - Trang 2-17 - 2006
P. Brandon Matheny1, Neale L. Bougher2
1Biology Department, University of Washington, Box 351330, Seattle, WA, 98195-5325, USA
2Department of Conservation and Land Management, Western Australian Herbarium, Locked Bag 104, Bentley Delivery Centre, WA 6983, Perth, Australia

Tóm tắt

Từ khóa


Tài liệu tham khảo

Alexander I (1989) Systematics and ecology of ectomycorrhizal legumes. In: Stirton CH, Zarucchi JL (eds) Advances in legume biology. Monogr Syst Bot Mo Bot Gard 29:607–624

Baldwin BG, Sanderson MJ (1998) Age and rate of diversification of the Hawaiian silversword alliance (Compositae). Proc Natl Acad Sci U S A 95:9402–9406

Bougher NL, Syme K (1998) Fungi of southern Australia. University of Western Australia Press, Nedlans, Western Australia

Bougher NL, Grove TS, Malajczuk N (1990) Growth and phosphorus acquisition of karri (Eucalyptus diversicolor F. Muell.) seedlings inoculated with ectomycorrhizal fungi in relation to phosphorous supply. New Phytol 114:77–85

Bougher NL, Fuhrer BA, Horak E (1994) Taxonomy and biogeography of Australian Rozites species mycorrhizal with Nothofagus and Myrtaceae. Aust Syst Bot 7:353–375

Briggs JC (2003) The biogeographic and tectonic history of India. J Biogeogr 30:381–388

Brundrett MC, Bougher NL, Dell B, Gove TS, Malajczuk N (1996) Working with mycorrhizas in forestry and agriculture. ACIAR Monograph 32, Australian Centre for International Agricultural Research, Canberra

Bruns TD, White TJ, Taylor JW (1991) Fungal molecular systematics. Ann Rev Ecolog Syst 22:525–564

Burbridge NT (1960) The phytogeography of the Australian region. Aust J Bot 8:75–209

Buyck B, Eysartier G (1999) Two new species of Inocybe (Cortinariaceae) from African woodland. Kew Bull 54:675–681

Castellano MA, Bougher NL (1994) Consideration of the taxonomy and biodiversity of Australian ectomycorrhizal fungi. Plant Soil 159:37–46

Charles-Nelson E (1981) Phytogeography of southern Australia. In: Keast A (ed) The ecological biogeography of Australia. Junk, The Hague, pp 735–759

Chaverri P, Castlebury LA, Overton BE, Samuels GJ (2003) Hypocrea/Trichoderma: species with conidiophore elongations and green conidia. Mycologia 95:1100–1140

Cleland JB (1933) Australian fungi: notes and descriptions, no. 9. Trans Proc R Soc S Aust 57:187–194

Clémençon H (2004) Cytology and plectology of the Hymenomycetes. Bibl Mycol 199:iii–488

De Seynes J (1897) Recherches pour servir à l’histoire naturelle et à la flore des champignons du Congo Français I. Massar et Cie, Paris

Desjardin DE, Wang Z, Binder M, Hibbett DS (2004) Sparassis cystidiosa sp. nov. from Thailand is described using morphological and molecular data. Mycologia 96:1010–1014

Donoghue MJ, Bell CD, Li J (2001) Phylogenetic patterns in northern hemisphere plant geography. Int J Plant Sci 162[6 Suppl]:S41–S52

Ducousso M, Bena G, Bourgeois C, Buyck B, Eysartier G, Vincelette M, Rabevohitra R, Randrihasipara L, Dreyfus B, Prin Y (2004) The last common ancestor of Sarcolaenaceae and Asian dipterocarp trees was ectomycorrhizal before the India–Madagascar separation, about 88 million years ago. Mol Ecol 13:231–236

Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791

Felsenstein J (1993) PHYLiP (Phylogeny inference package) version 3.57. University of Washington, Seattle, USA

Felsenstein J (2004) Inferring phylogenies. Sinauer, Sunderland, Massachusetts, USA

Francis AA, Bougher NL (2003) Historical and current perspectives in the systematics of Australian cortinarioid sequestrate (truffle-like) fungi. Australasian Mycologist 21:81–93

Geml J, Geiser DM, Royse DJ (2004) Molecular evolution of Agaricus species based on ITS and LSU rDNA sequences. Mycol Prog 3:157–176

Glen M, Tommerup IC, Bougher NL, O’Brien PA (2001) Interspecific and intraspecific variation of ectomycorrhizal fungi associated with Eucalyptusecosystems as revealed by ribosomal DNA PCR-RFLP. Mycol Res 105:843–858

Graur D, Martin W (2004) Reading the entrails of chickens: molecular timescales of evolution and illusion of precision. Trends Genet 20:80–86

Green JW (1964) Discontinuous and presumed vicarious plant species in southern Australia. J R Soc West Aust 47:25–32

Grgurinovic CA (1997) Larger fungi of south Australia. The Botanic Gardens of Adelaide and State Herbarium and The Flora and Fauna of South Australia Handbooks Committee, Adelaide

Halling R (2001) Ectomycorrhizae: co-evolution, significance, and biogeography. Ann Mo Bot Gard 88:5–13

Heckman DS, Geiser DM, Eidell BR, Stauffer RL, Kardos NL, Hedges SB (2001) Molecular evidence for the early colonization of land by fungi and plants. Science 293:1129–1133

Hibbett DH (2001) Shiitake mushrooms and molecular clocks: historical biogeography of Lentinula. J Biogeogr 28:231–241

Høiland K, Holst-Jensen A (2000) Cortinarius phylogeny and possible taxonomic implications of ITS rDNA sequences. Mycologia 92:694–710

Holmgren PK, Holmgren NH, Barnett LC (1990) Index herbariorum, part I. Herbaria of the world, 8th edn. Regnum Vegetabile 120, New York Botanical Garden, New York ( http://www.nybg.org/bsci/ih/ )

Horak E (1979a) New species of Simocybe Karsten (Agaricales) from Papua New Guinea. Sydowia 32:123–130

Horak E (1979b) Additional species of Simocybe (Agaricales) from Sabah and Australia. Sydowia 32:181–184

Horak E (1980) Fungi agaricini novazelandiae X. SimocybeKarsten. N Z J Bot 18:189–196

Horak E (1983) Mycogeography in the South Pacific region: Agaricales, Boletales. Aust J Bot 10:1–41 (Suppl)

Hugall AF, Lee MSY (2004) Molecular claims of Gondwanan age for Australian agamid lizards are untenable. Mol Biol Evol 21:2102–2110

Jülich W (1981) Higher taxa of Basidiomycetes. Bibl Mycol 85:1–485

Knapp M, Stöckler K, Delsuc F, Sebastiani F, Lockhart P (2005) Relaxed molecular clock provides evidence for long-distance dispersal of Nothofagus (southern beech). PLoS Biol 3:e14

Kornerup A, Wanscher JH (1967) Methuen handbook of colour. Methuen, London

Kropp BR, Matheny PB (2004) Basidiospore homoplasy and variation in the Inocybe chelanensis group in North America. Mycologia 96:295–309

Kuyper TW (1986) A revision of the genus Inocybe in Europe: I. subgenus Inosperma and the smooth-spored species of subgenus Inocybe. Persoonia 3(Suppl.):1–247

Ladiges PY, Udovicic F, Nelson G (2003) Australian biogeographical connections and the phylogeny of large genera in the plant family Myrtaceae. J Biogeogr 30:989–998

Liu YJ, Whelen S, Hall BD (1999) Phylogenetic relationships among Ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol 16:1799–1808

Madisson DR, Madisson WP (2000) MacClade 4: analysis of phylogeny and character evolution. Sinauer, Sunderland, Massachusetts

Marchant NG (1973) Species diversity in the south-western flora. J R Soc West Aust 56:23–30

Martin F, Díez J, Dell B, Delaruelle C (2002) Phylogeography of the ectomycorrhizal Pisolithus species as inferred from nuclear ribosomal ITS sequences. New Phytol 153:345–357

Matheny PB (2005) Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe, Agaricales). Mol Phylogenet Evol 35:1–20

Matheny PB, Ammirati JF (2003) Inocybe angustispora, I. taedophila, and Cortinarius aureifolius: an unusal inocyboid Cortinarius. Mycotaxon 88:401–407

Matheny PB, Bougher NL (2005) A new violet species of Inocybe (Agaricales) from urban and rural landscapes in Western Australia. Australasian Mycologist 24:7–12

Matheny PB, Watling R (2004) A new and unusual species of Inocybe (Inosperma clade) from tropical Africa. Mycotaxon 89:497–503

Matheny PB, Liu YJ, Ammirati JF, Hall BD (2002) Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales). Am J Bot 89:688–698

Matheny PB, Aime MC, Henkel TW (2003) New species of Inocybe from Dicymbe forests of Guyana. Mycol Res 107:495–505

McLoughlin S (2001) The breakup history of Gondwana and its impact on pre-Cenozoic floristic provincialism. Aust J Bot 49:271–300

Miller AN, Huhndorf SM (2004) Using phylogenetic species recognition to delimit species boundaries within Lasiosphaeria. Mycologia 96:1106–1127

Moncalvo J-M, Lutzoni FM, Rehner SA, Johnson J, Vilgalys R (2000) Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Syst Biol 49:278–305

Moncalvo J-M, Vilgalys R, Redhead SA, Johnson JE, James TY, Aime MC, Hofstetter V, Verduin W, Larsson E, Baroni TJ, Thorn RG, Jacobsson S, Clemencon H, Miller OK (2002) One hundred and seventeen clades of euagarics. Mol Phylogenet Evol 23:357–400

Mueller GM, Wu QX, Huang YQ, Guo SY, Aldana-Gomez R, Vilgalys R (2001) Assessing biogeographic relationships between North American and Chinese macrofungi. J Biogeogr 28:271–281

Munsell Soil Color Charts (1954) Munsell Color Company, Baltimore 18, Maryland, USA

Muse SV, Weir BS (1992) Testing for equality of evolutionary rates. Genetics 132:269–276

Natarajan K, Narayanan K, Ravindran C, Kumaresan V (2005) Biodiversity of agarics from Nilgiri Biosphere Reserve, Western Ghats, India. Curr Sci 88:1890–1893

Nelson EC (1974) Disjunct plant distributions on the south-western Nullarbor Plain, Western Australia. J R Soc West Aust 57:105–117

Peintner U, Bougher NL, Castellano MA, Moncalvo J-M, Moser MM, Trappe JM, Vilgalys R (2001) Multiple origins of sequestrate fungi related to Cortinarius (Cortinariaceae). Am J Bot 88:2168–2179

Pirozynski KA (1983) Pacific mycogeography: an appraisal. Aust J Bot 10:137–159 (Suppl)

Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817–818

Printzen C, Lumbsch HT (2000) Molecular evidence for the diversification of extant lichens in the late Cretaceous and Tertiary. Mol Phylogenet Evol 17:379–387

Raven PH (1979) Plate tectonics and southern hemisphere biogeography. In: Lauresen K, Holm-Nielsen LB (eds) Tropical botany. Academic, London, pp 3–24

Raven PH, Axelrod DI (1974) Angiosperm biogeography and past continental movements. Ann Mo Bot Gard 61:539–673

Ridgway R (1912) Color standards and color nomenclature. (Published by the author) Washington, DC, USA

Sanderson MJ (1998) Estimating rate and time in molecular phylogenies: beyond the molecular clock? In: Soltis DE, Soltis PE, Doyle JJ (eds) Molecular systematics of plants II: DNA sequencing. Kluwer, Norwell, Massachusetts, pp 242–264

Sanderson MJ (2003) Molecular data from 27 proteins do not support a Precambrian origin of land plants. Am J Bot 90:954–956

Sanmartín I, Ronquist F (2004) Southern hemisphere biogeography inferred by event-based models: plant versus animal patterns. Syst Biol 53:216–243

Singer R (1973) Neotropical species of Simocybe. Beih Nova Hedwig 44:485–517

Singer R (1986) The Agaricales in modern taxonomy, 4th edn. Koeltz Scientific Books, Koenigstein, Germany

Specht RL (1981) Evolution of the Australian flora: some generalization. In: Keast A (ed) Ecological biogeography of Australia. Junk, The Hague, Netherlands, pp 785–805

Swofford DL (2003) PAUP*. Phylogenetic analysis using parsimony (*and other methods), version 4. Sinauer, Sunderland, Massachusetts

Takamatsu S, Matsuda S (2004) Estimation of molecular clocks for ITS and 28S rDNA in Erysiphales. Mycoscience 45:340–344

Thomas KA, Peintner U, Moser MM, Manimohan P (2002) Anamika, a new mycorrhizal genus of Cortinariaceae from India and its phylogenetic position based on ITS and LSU sequences. Mycol Res 106:245–251

Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882

Tommerup IC, Bougher NL (1999) The role of ectomycorrhizal fungi in nutrient cycling in temperate Australian woodlands. In: Hobbs RJ, Yates CJ (eds) Temperate eucalypt woodlands in Australia: biology, conservation, management, and restoration. Beatty, Chipping Norton, pp 190–224

Tremetserberger K, Weiss-Schneeweiss H, Stuessy T, Samuel R, Kadlec G, Ortiz MA, Talavera S (2005) Nuclear ribosomal DNA and karyotypes indicate a NW African origin of South American Hypochaeris (Asteraceae, Cichorieae). Mol Phylogenet Evol 35:102–116

Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238–4246

Vilgalys R, Sun BL (1994) Ancient and recent patterns of geographic speciation in the oyster mushroom Pleurotus revealed by phylogenetic analysis of ribosomal DNA sequences. Proc Natl Acad Sci U S A 91:4599–4603

Villarreal M, Esteve-Raventós F, Heykoop M, Horak E (1998) Inocybe inexpectata, a new and unusual species of subgenus Mallocybe. Mycol Res 102:479–482

Vrinda KB, Pradeep CK, Matthew S, Abraham TK (1997) Inocybe purpureoflavida sp. nov. (Cortinariaceae) from Western Ghats of Kerala state, India. Mycotaxon 64:1–6

Wang XQ, Tank DC, Sang T (2000) Phylogeny and divergence times in Pinaceae: evidence from three genomes. Mol Biol Evol 17:773–781

Wang Z, Binder M, Dai YC, Hibbett DS (2004) Phylogenetic relationships of Sparassis inferred from nuclear and mitochondrial ribosomal DNA and RNA polymerase sequences. Mycologia 96:1015–1029

Warcup JH (1980) Ectomycorrhizal associations of Australian indigenous plants. New Phytol 85:531–535

Watling R (2001) An unusual Inocybe sp. from West Africa. Czech Mycol 52:329–334

Wikström N, Savolainen V, Chase MW (2001) Evolution of the angiosperms: calibrating the family tree. Proc R Soc Lond B 268:2211–2220

Winkworth RC, Wagstaff SJ, Glenn YD, Lockhart PJ (2002) Plant dispersal NEWS from New Zealand. Trends Ecol Evol 17:514–520

Wu QX, Mueller GM, Lutzoni FM, Huang YQ, Guo SH (2000) Phylogenetic and biogeographic relationships of eastern Asian and eastern North American disjunct Suillus species (fungi) as inferred from nuclear ribosomal RNA ITS sequences. Mol Phylogenet Evol 17:37–47

Yates CJ, HobbS RJ, True DT (1999) The distribution and status of eucalypt woodlands in Western Australia In: Hobbs RJ, Yates CG (eds) Temperate eucalypt woodlands in Australia: biology, conservation, management and restoration. Beatty, Chipping Norton, pp 1–5