The metabolomics standards initiative (MSI)

Metabolomics - Tập 3 Số 3 - Trang 175-178 - 2007
Oliver Fiehn1, D. J. Robertson2, Jules Griffin3, Mariet vab der Werf4, Basil J. Nikolau5, Norman Morrison6, Lloyd W. Sumner7, Royston Goodacre8, Nigel Hardy9, Chris Taylor10, Jennifer Fostel11, Bruce S. Kristal12, Rima Kaddurah‐Daouk13, Pedro Mendes14, Ben van Ommen4, John C. Lindon15, Susanna Assunta Sansone10
1Genome Center, University of California, Davis, Davis, CA 95616, USA
2Molecular Profiling, Pfizer Global Research and Development, Ann Arbor, MI, 48105, USA
3Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1QW, UK
4TNO Quality of Life, Zeist, The Netherlands
5Iowa State University, Ames (IA), USA
6School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, M13 9PL, UK
7The Samuel Roberts Noble Foundation, Ardmore, OK, USA
8School of Chemistry, The University of Manchester, Manchester, UK
9Department of Computer Science, University of Wales, Penglais, Aberystwyth, Ceredigion, Wales, SY23 3DB, UK
10EMBL-EBI The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
11National Institute for Environmental Health Science, Research Triangle Park, NC, 27709-2233, USA
12Department of Neurosurgery, Harvard Medical School, Brigham and Women’s Hospital, Boston, MA, USA
13Department of Psychiatry and Behavioral Sciences, Duke University, Durham, NC, USA
14Virgina Bioinformatics Institute, Blacksburg, VA, USA
15Department of Biomolecular Medicine, Imperial College of London, London, SW7 2AZ, UK

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Tài liệu tham khảo

Ball, C. A., & Brazma, A. (2006). MGED standards: Work in progress. OMICS, 10, 138–144.

Castle, L. A., Fiehn, O., Kaddurah-Daouk, R., & Lindon, J. C. (2006). Metabolomics standards workshop and the development of international standards for reporting metabolomics experimental results. Briefings in Bioinformatics, 7, 159–165.

Fiehn, O., Kristal, B., van Ommen, B., Sumner, L. W., Sansone, S. A., Taylor, C., Hardy, N., & Kaddurah-Daouk, R. (2006). Establishing reporting standards for metabolomic and metabonomic studies: A call for participation. OMICS, 10, 158–63.

Field, D., & Sansone, S. A. (2006). A special issue on data standards. OMICS, 10, 84–93.

Jenkins, H., Hardy, N., Beckmann, M., Draper, J., Smith, A. R., Taylor, J., Fiehn, O., Goodacre, R., Bino, R., Hall, R., Kopka, J., Lane, G. A., Lange, B. M., Liu, J. R., Mendes, P., Nikolau, B. G., Oliver, S. G., Paton, N. W., Rhee, S., Roessner-Tunali, U., Saito, K., Smedsgard, J., Sumner, L. W., Wang, T., Walsh, S., Wurtele, E. S., & Kell, D. B. (2004). A proposed framework for the description of plant metabolomics experiments and their results. Nature Biotechnology, 22, 1601–1605.

Jones, A. R., Miller, M., Aebersold, R., Apweiler, R., Ball, C. A., Brazma, C., Greef, G. D., Hardy, N., Hermjakod, H., Hubbard, S. J., Hussey, P., Igra, M., Jenkins, H., Julian Jr., R. K., Laursen, K., Oliver, S. G., Paton, N. W., Sansone, S. A., Sarkans, U., Stoeckert Jr., C. J., Taylor, C. F., Whetzel, P. L., White, J. A., Spellman, P., & Pizarro, A. (2006). The Functional Genomics Experiment model (FuGE): An extensible framework for standards in functional genomics. Nature Biotechnology (community consultation phase: http://www.nature.com/nbt/consult ).

Lindon, J. C., Nicholson, J. K., Holmes, E., Antti, H., Bollard, M. E., Keun, H., Beckonert, O., Ebbels, T. M., Reilly, M. D., Robertson, D., Stevens, G. J., Luke, P., Breau, A. P., Cantor, G. H., Bible, R. H., Niederhauser, U., Senn, H., Schlotterbeck, G., Sidelmann, U. G., Laursen, S. M., Tymiak, A., Car, B. D., Lehman-McKeeman, L., Colet, J. M., Loukaci, A., & Thomas, C. (2003). Contemporary issues in toxicology—The role of metabonomics in toxicology and its evaluation by the COMET project. Toxicology and Applied Pharmacology, 187, 137–146.

Lindon, J. C., Nicholson, J. K., Holmes, E., Keun, H. C., Craig, A., Pearce, J. T. M., Bruce, S. J., Hardy, N., Sansone, S. A., Antti, H., Jonsson, P., Daykin, C., Navarange, M., Beger, R. D., Verheij, E. R., Amberg, A., Baunsgaard, D., Cantor, G. H., Lehman-McKeeman, L., Earll, M., Wold, S., Johansson, E., Haselden, J. N., Kramer, K., Thomas, C., Lindberg, J., Schuppe-Koistinen, I., Wilson, I. D., Reily, M. D., Robertson, D. G., Senn, H., Krotzky, A., Kochhar, S., Powell, J., van der Ouderaa, F., Plumb, R., Schaefer, H., & Spraul, M. (2005). Summary recommendations for standardization and reporting of metabolic analyses. Nature Biotechnology, 23, 833–838.

Lockhart, D. J., & Winzeler, E. A. (2000). Genomics, gene expression and DNA arrays. Nature, 405, 827–836.

MetaboMeetings. (2006). [ http://www.thempf.org/conferences.html/ ].

MIBBI. (2007). [ http://mibbi.sourceforge.net/ ].

OBI. (2006) [ http://obi.sourceforge.net/ ].

Quackenbush, J. (2004). Data standards for ‘omic’ science. Nature Biotechnology, 22, 613–614.

Quackenbush, J. (2006). Standardizing the standards. Molecular Systems Biology, 2, 2006.

SMRS. (2005). [ http://www.smrsgroup.org/ ].

Taylor, C. F., Hermjakob, H., Julian Jr., R. K., Garavelli, J. S., Aebersold, R., & Apweiler, R. (2006). The work of the Human Proteome Organisation’s Proteomics Standards Initiative (HUPO PSI). OMICS, 10, 145–151.

Whetzel, P. L., Brinkman, R. R., Causton, H. C., Fan, L., Field, D., Fostel, J., Fragoso, G., Gray, T., Heiskanen, M., Hernandez-Boussard, T., Morrison, N., Parkinson, H., Rocca-Serra, P., Sansone, S. A., Schober, D., Smith, B., Stevens, R., Stoeckert Jr., C. J., Taylor, C., White, J., & Wood, A. (2006). Development of FuGO: An ontology for functional genomics investigations. OMICS, 10, 199–204.