Arivalagan, 2016, Insights from the shell proteome: biomineralization to adaptation, Mol. Biol. Evol., 34, 66, 10.1093/molbev/msw219
Bai, 2013, Comparative analysis of the transcriptome in tissues secreting purple and white nacre in the pearl mussel Hyriopsis cumingii, PLoS One, 8
Barry, 1971, A theory of ion permeation through membranes with fixed neutral sites, J. Membr. Biol., 4, 295, 10.1007/BF02431977
Benito-Martin, 2015, FunRich proteomics software analysis, let the fun begin!, Proteomics, 15, 2555, 10.1002/pmic.201500260
Boyiadzis, 2015, Information transfer by exosomes: a new frontier in hematologic malignancies, Blood Rev., 29, 281, 10.1016/j.blre.2015.01.004
Capello, 2019, Exosomes harbor B cell targets in pancreatic adenocarcinoma and exert decoy function against complement-mediated cytotoxicity, Nat. Commun., 10, 254, 10.1038/s41467-018-08109-6
Chen, 2017, HcTyr and HcTyp-1 of Hyriopsis cumingii, novel tyrosinase and tyrosinase-related protein genes involved in nacre color formation, Comp. Biochem. Physiol. B Biochem. Mol. Biol., 204, 1, 10.1016/j.cbpb.2016.11.005
Chen, 2019, The mantle exosome and microRNAs of Hyriopsis cumingii involved in nacre color formation, Mar. Biotechnol., 21, 634, 10.1007/s10126-019-09908-8
Colombo, 2014, Biogenesis, secretion, and intercellular interactions of exosomes and other extracellular vesicles, Annu. Rev. Cell Dev. Biol., 30, 255, 10.1146/annurev-cellbio-101512-122326
Donaldson, 1983, Fibrinogen and fibronectin as substrates for epidermal cell migration, J. Cell Sci., 62, 117, 10.1242/jcs.62.1.117
Fan, 2019, Functional study of PmHEX gene in Pinctada fucata martensii, Genomics Appl. Biol., 38, 29
Finn, 2016, InterPro in 2017-beyond protein family and domain annotations, Nucleic Acids Res., 45, D190, 10.1093/nar/gkw1107
Flower, 1996, The lipocalin protein family: structure and function, Biochem. J., 318, 1, 10.1042/bj3180001
Hanein, 1993, Fibronectin adsorption to surfaces of hydrated crystals. An analysis of the importance of bound water in protein-substrate interactions, Langmuir, 9, 1058, 10.1021/la00028a030
Hattan, 2001, Purification and characterization of a novel calcium-binding protein from the extrapallial fluid of the mollusc, Mytilus edulis, J. Biol. Chem., 276, 4461, 10.1074/jbc.M006803200
Huang, 2007, A novel extracellular EF-hand protein involved in the shell formation of pearl oyster, Biochim. Biophys. Acta Gen. Subj., 1770, 1037, 10.1016/j.bbagen.2007.03.006
Hurwitz, 2018, An optimized method for enrichment of whole brain-derived extracellular vesicles reveals insight into neurodegenerative processes in a mouse model of Alzheimer’s disease, J. Neurosci. Methods, 307, 210, 10.1016/j.jneumeth.2018.05.022
Jiang, 2019, Analysis of metallic element types and contents in pearls of different colors and their related tissues in Hyriopsis cumingii, J. Shanghai Ocean Univ. China, 28, 889
Jin, 2019, Identification of nacre matrix protein genes hic14 and hic19 and their roles in crystal growth and pearl formation in the mussel Hyriopsis cumingii, Biotechnol. Appl. Biochem., 66, 545, 10.1002/bab.1752
Jin, 2019, Hichin, a chitin binding protein is essential for the self-assembly of organic frameworks and calcium carbonate during shell formation, Int. J. Biol. Macromol., 135, 745, 10.1016/j.ijbiomac.2019.05.205
Johnstone, 1987, Vesicle formation during reticulocyte maturation. Association of plasma membrane activities with released vesicles (exosomes), J. Biol. Chem., 262, 9412, 10.1016/S0021-9258(18)48095-7
Kanehisa, 2004, The KEGG resource for deciphering the genome, Nucleic Acids Res., 32, D277, 10.1093/nar/gkh063
Keller, 2006, Exosomes: from biogenesis and secretion to biological function, Immunol. Lett., 107, 102, 10.1016/j.imlet.2006.09.005
Kong, 2019, A novel basic matrix protein of Pinctada fucata, PNU9, functions as inhibitor during crystallization of aragonite, CrystEngComm, 21, 1250, 10.1039/C8CE02194E
Li, 2004, Cloning and expression of a pivotal calcium metabolism regulator: calmodulin involved in shell formation from pearl oyster (Pinctada fucata), Comp. Biochem. Physiol. B: Biochem. Mol. Biol., 138, 235, 10.1016/j.cbpc.2004.03.012
Li, 2014, Cloning, differential tissue expression of a novel hcApo gene, and its correlation with total carotenoid content in purple and white inner-shell color pearl mussel Hyriopsis cumingii, Gene, 538, 258, 10.1016/j.gene.2014.01.046
Li, 2014, Comparative analysis of total carotenoid content in tissues of purple and white inner-shell color pearl mussel, Hyriopsis cumingii, Aquac. Int., 22, 1577, 10.1007/s10499-014-9766-6
Li, 2017, Freshwater nucleated pearl quality is influenced by host mussel growth traits in Hyriopsis cumingii, Aquac. Res., 48, 4656, 10.1111/are.13288
Liu, 2015, Silkmapin of Hyriopsis cumingii, a novel silk-like shell matrix protein involved in nacre formation, Gene, 555, 217, 10.1016/j.gene.2014.11.006
Lowenstam, 1989, On biomineralization, Biomineralization Chem. Biochem. Perspect., 27, 99
MacLean, 2010, Skyline: an open source document editor for creating and analyzing targeted proteomics experiments, Bioinformatics, 26, 966, 10.1093/bioinformatics/btq054
Marie, 2008, Nacre calcification in the freshwater mussel Unio pictorum: carbonic anhydrase activity and purification of a 95-kDa calcium-binding glycoprotein, Chembiochem, 9, 2515, 10.1002/cbic.200800159
Marie, 2011, Molecular evolution of mollusc shell proteins: insights from proteomic analysis of the edible mussel Mytilus, J. Mol. Evol., 72, 531, 10.1007/s00239-011-9451-6
McGinty, 2010, Xenografts and pearl production in two pearl oyster species, P. maxima and P. margaritifera: effect on pearl quality and a key to understanding genetic contribution, Aquaculture, 302, 175, 10.1016/j.aquaculture.2010.02.023
Mount, 2004, Hemocyte-mediated shell mineralization in the eastern oyster, Science, 304, 297, 10.1126/science.1090506
Moura, 2000, Organic compounds in the extrapalial fluid and haemolymph of Anodonta cygnea (L.) with emphasis on the seasonal biomineralization process, Comp. Biochem. Physiol. B: Biochem. Mol. Biol., 125, 293, 10.1016/S0305-0491(99)00192-3
Neff, 1972, Ultrastructural studies of Periostracum formation in the hard shelled clam Mercenaria mercenaria (L), Tissue Cell, 4, 311, 10.1016/S0040-8166(72)80050-8
Negahdaripour, 2021, Small extracellular vesicles (sEVs): discovery, functions, applications, detection methods and various engineered forms, Expert. Opin. Biol. Ther., 21, 371, 10.1080/14712598.2021.1825677
Nudelman, 2008, Forming nacreous layer of the shells of the bivalves Atrina rigida and Pinctada margaritifera: an environmental- and cryo-scanning electron microscopy study, J. Struct. Biol., 162, 290, 10.1016/j.jsb.2008.01.008
Panayotou, 1989, Domains of laminin with growth-factor activity, Cell, 56, 93, 10.1016/0092-8674(89)90987-2
Poggio, 2019, Suppression of exosomal PD-L1 induces systemic anti-tumor immunity and memory, Cell, 177, 414, 10.1016/j.cell.2019.02.016
Shen, 2018, Cloning of a microphthalmia-associated transcription factor gene and its functional analysis in nacre formation and melanin synthesis in Hyriopsis cumingii, Aquac. Fish., 3, 217, 10.1016/j.aaf.2018.09.004
Shi, 2014, Study of coloration mechanism of cultured freshwater pearls from mollusk Hyriopsis cumingii, J. Appl. Spectrosc., 81, 97, 10.1007/s10812-014-9893-x
Shoji, 2010, Alternative expression of vacuolar iron transporter and ferritin genes leads to blue/purple coloration of flowers in tulip cv. ‘Murasakizuisho’, Plant Cell Physiol., 51, 215, 10.1093/pcp/pcp181
Suresh, 2012, ExoCarta 2012: database of exosomal proteins, RNA and lipids, Nucleic Acids Res., 40, D1241, 10.1093/nar/gkr828
Tatusov, 2003, The COG database: an updated version includes eukaryotes, BMC Bioinformatics, 4, 41, 10.1186/1471-2105-4-41
Thery, 2002, Exosomes: composition, biogenesis and function, Nat. Rev. Immunol., 2, 569, 10.1038/nri855
Théry, 2018, Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines, J. Extracell. Vesicles, 7, 1535750, 10.1080/20013078.2018.1535750
Vella, 2017, A rigorous method to enrich for exosomes from brain tissue, J. Extracell. Vesicles, 6, 1348885, 10.1080/20013078.2017.1348885
Wang, 2007, SSR analysis of genetic diversity and phylogenetic relationships among different populations of Hyriopsis cumingii from the five lakes of China, J. Fish. China, 12, 12
Wang, 2009, Cloning, characterization and expression of ferritin subunit from clam Meretrix meretrix in different larval stages, Comp. Biochem. Physiol. B: Biochem. Mol. Biol., 154, 12, 10.1016/j.cbpb.2009.04.011
Wang, 2017, Identification, structural characterization and expression analysis of a novel carbonic anhydrase from freshwater mussel Hyriopsis cumingii, Gene, 636, 78, 10.1016/j.gene.2017.08.031
Wang, 2017, Cloning and mineralization-related functions of the chitinase gene in Chlamys farreri, J. Fish. China, 41, 189
Watabe, 1965, Studies in shell formation, J. Ultrastruct. Res., 12, 351, 10.1016/S0022-5320(65)80104-6
Weiner, 1979, Aspartic acid-rich proteins: major components of the soluble organic matrix of mollusk shells, Calcif. Tissue Int., 29, 163, 10.1007/BF02408072
Whittaker, 2002, Distribution and evolution of von Willebrand/integrin A domains: widely dispersed domains with roles in cell adhesion and elsewhere, Mol. Biol. Cell, 13, 3369, 10.1091/mbc.e02-05-0259
Xue, 2017, Hypoxic exosomes facilitate bladder tumor growth and development through transferring long non-coding RNA-UCA1, Mol. Cancer, 16, 143, 10.1186/s12943-017-0714-8
Yi, 2012, Exosomes and microvesicles: extracellular vesicles for genetic information transfer and gene therapy, Hum. Mol. Genet., 21, 125, 10.1093/hmg/dds317
Yonezawa, 2016, Molecular cloning and functional analysis of chitinases in the fresh water snail, Lymnaea stagnalis, J. Struct. Biol., 196, 107, 10.1016/j.jsb.2016.02.021
Zhang, 2017, Dynamic structural color in the nacre of Hyriopsis Cumingii and its cause, Optik, 135, 252, 10.1016/j.ijleo.2017.01.098
Zhang, 2006, A novel putative tyrosinase involved in periostracum formation from the pearl oyster (Pinctada fucata), Biochem. Biophys. Res. Commun., 342, 632, 10.1016/j.bbrc.2006.01.182
Zhang, 2012, The oyster genome reveals stress adaptation and complexity of shell formation, Nature, 490, 49, 10.1038/nature11413