The isolation and functional identification of a phosphoenolpyruvate carboxykinase gene from Saccharina japonica
Aquaculture and Fisheries - 2023
Tài liệu tham khảo
Aich, 2007, Phylogenetic study of the evolution of PEP-carboxykinase, Evolutionary Bioinformatics, 3, 333
Akagawa, 1972, The enzyme system for the entrance of 14CO2 in the dark CO2-fixation of brown algae, Plant and Cell Physiology, 13, 999
Badger, 2008, Multiple rubisco forms in proteobacteria: Their functional significance in relation to CO2 acquisition by the CBB cycle, Journal of Experimental Botany, 59, 1525, 10.1093/jxb/erm297
Bendtsen, 2004, Improved prediction of signal peptides: SignalP 3.0, Journal of Molecular Biology, 340, 783, 10.1016/j.jmb.2004.05.028
Bi, 2019, Full-length mRNA sequencing in Saccharina japonica and identification of carbonic anhydrase genes, Aquacult. Fish., 4, 53
Cabello-Pasini, 2001, Expression of carboxylating enzymes in Laminaria setchellii (Phaeophyceae), Phycologia, 40, 351, 10.2216/i0031-8884-40-4-351.1
Caffrey, 2007, Pfaat version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments, BMC Bioinformatics, 8, 381, 10.1186/1471-2105-8-381
Chen, 1994, Studies on the phosphoenolpyrurate carboxykinase of Laminaria japonica, Oceanologia et Limnologia Sinica, 25, 596
Chenna, 2003, Multiple sequence alignment with the Clustal series of programs, Nucleic Acids Research, 31, 3497, 10.1093/nar/gkg500
Chen, 2010, Cloning of SRP gene from the gametophytes of Laminaria japonica and its expression in Escherichia coli, Journal of Fisheries of China, 34, 1165, 10.3724/SP.J.1231.2010.06909
Chiba, 2015, Discovery of PPi-type phosphoenolpyruvate carboxykinase genes in eukaryotes and bacteria, Journal of Biological Chemistry, 290, 23960, 10.1074/jbc.M115.672907
Cotelesage, 2005, Crystal structure of Anaerobiospirillum Succiniciproducens PEP carboxykinase reveals an important active site loop, The International Journal of Biochemistry & Cell Biology, 37, 1829, 10.1016/j.biocel.2005.03.008
Craigie, 1963, Dark fixation of C14-bicarbonate by marine algae, Canadian Journal of Botany, 41, 317, 10.1139/b63-029
Do Amaral, 2019, Direct assay to evaluate phosphoenolpyruvate carboxykinase activity, Journal of the Brazilian Chemical Society, 30, 2105
Fan, 2020, Single‐base methylome profiling of the giant kelp Saccharina japonica reveals significant differences in DNA methylation to microalgae and plants, New Phytologist, 225, 234, 10.1111/nph.16125
Hanson, 2003, The Chlamydomonas reinhardtii cia 3 mutant lacking a thylakoid lumen-localized carbonic anhydrase is limited by CO2 supply to RuBisCo and not photosystem II function in vivo, Plant Physiol., 132, 2267, 10.1104/pp.103.023481
Hanson, 1994, Phosphoenolpyruvate carboxykinase (GTP): The gene and the enzyme, Advances in Enzymology and Related Areas of Molecular Biology, 69, 203
Higgins, 2010, A family of closely related ATP-binding subunits from prokaryotic and eukaryotic cells, Bioessays News & Rev. Mol. Cell. & Dev. Biol., 8, 111, 10.1002/bies.950080406
Hou, 1991, Isolation and some properties of PEP carboxykinase in Laminaria japonica, Plant Physiology Communications, 27, 100
Hu, 2001, Extraction of RAPD-friendly DNA from Laminaria japonica (Phaeophyta) after enzymatic dissociation of the frozen sporophyte tissue, Journal of Applied Phycology, 13, 415, 10.1023/A:1011920213639
Ji, 1980, Studies on the initial products of 14C metabolism in Laminaria japonica, Oceanologia et Limnologia Sinica, 11, 229
Koichiro, 2021, MEGA11: Molecular evolutionary genetics analysis version 11, Molecular Biology and Evolution, 38, 3022, 10.1093/molbev/msab120
Kremer, 1981, Aspects of carbon metabolism in marine macroalgae, Oceanography and Marine Biology an Annual Review, 19, 41
Küppers, 1978, Longitudinal profiles of carbon dioxide fixation capacities in marine macroalgae, Plant Physiology, 62, 49, 10.1104/pp.62.1.49
Leegood, 2003, Regulation and roles of phosphoenolpyruvate carboxykinase in plants, Archives of Biochemistry and Biophysics, 414, 204, 10.1016/S0003-9861(03)00093-6
Lin, 1991, The relation between activity of phosphoenolpyruvate carboxykinase and photosynthesis in Aloe Vera leaves, Acta Botanica Sinica, 33, 273
Lin, 1994, Diurna changes of phosphoenolpyruvate carboxykinase activity, oxalacetate content and adenosine pool in Pineapple leaves, Acta Phytophysiologica Sinica, 20, 353
Martín, 2011, Two phosphoenolpyruvate carboxykinases coexist in the crassulacean acid metabolism plant ananas comosus. isolation and characterization of the smaller 65 kDa form, Plant Physiol. Biochem., 49, 646, 10.1016/j.plaphy.2011.02.015
Matte, 1997, 1997 Structure and mechanism of phosphoenolpyruvate carboxykinase, Journal of Biological Chemistry, 272, 8105, 10.1074/jbc.272.13.8105
Petersen, 2001, Metabolic consequences of altered phosphoenolpyruvatecarboxykinase activity in Corynebacterium glutamicum reveal anaplerotic regulation mechanisms in vivo, Metabolic Engineering, 3, 344, 10.1006/mben.2001.0198
Reiskind, 1991, The role of phosphoenolpyruvate carboxykinase in a marine macroalga with C4-like photosynthetic characteristics, Proceedings of the National Academy of Sciences, 88, 2883, 10.1073/pnas.88.7.2883
Ross, 2008, Classification of macroalgae as fuel and its thermochemical behaviour, Bioresource Technology, 99, 6494, 10.1016/j.biortech.2007.11.036
Ruffner, 1975, Phosphoenolpyruvate carboxykinase activity in grape berries, Plant Physiol., 56, 67, 10.1104/pp.56.1.67
Schrodinger, 2010
Shao, 2019, Genome-wide identification of genes involved in carbon fixation in Saccharina japonica and responses of putative C4-related genes to bicarbonate concentration and light intensity, Plant Physiol. Biochem., 137, 75, 10.1016/j.plaphy.2019.01.032
Sokaribo, 2020, Kinetic and structural analysis of Escherichia coli phosphoenolpyruvate carboxykinase mutants, Biochimica et Biophysica Acta, General Subjects, 1864, 10.1016/j.bbagen.2020.129517
Starr, 1993, UTEX-The culture collection of algae at the University of Texas at Austin 1993 list of cultures, Journal of Phycology, 29, 1, 10.1111/j.0022-3646.1993.00001.x
Tabita, 2008, Distinct form I, II, III, and IV Rubisco proteins from the three kingdoms of life provide clues about Rubisco evolution and structure/function relationships, Journal of Experimental Botany, 59, 1515, 10.1093/jxb/erm361
Xu, 1991, Studies on the activity of PEPck in L. japonica, Marine Science, 15, 41
Yang, 2016, Knockdown of phosphoenolpyruvate carboxykinase increases carbon flux to lipid synthesis in Phaeodactylum tricornutum, Algal Research, 15, 50, 10.1016/j.algal.2016.02.004
Yuan, 1988, 180
Ye R. X., Yu Z., Shi W. W., Gao H. J., Bi Y. H., Zhou Z. G. Characterization of α-type carbonic anhydrase (CA) gene and subcellular localization of α-CA in the gametophytes of Saccharina japonica. (2014). Journal of Applied Phycology, 26 (2), 881 - 890.
Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. (1970). Nature, 227 (5259), 680 - 685.
