The introduction of fox rabies into Italy (2008–2011) was due to two viral genetic groups with distinct phylogeographic patterns

Infection, Genetics and Evolution - Tập 17 - Trang 202-209 - 2013
Alice Fusaro1, Isabella Monne1, Angela Salomoni1, Angélique Angot1, Matteo Trolese2, Nicola Ferrè2, Franco Mutinelli1, Edward C. Holmes3,4, Ilaria Capua1, Philippe Lemey5, Giovanni Cattoli1, Paola De Benedictis1
1FAO and National Reference Centre for Rabies & OIE Collaborating Centre for Diseases at the Animal-Human Interface, Division of Biomedical Science, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
2GIS Office, Veterinary Epidemiological Unit, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
3Sydney Emerging Infections and Biosecurity Institute, School of Biological Sciences and Sydney Medical School, The University of Sydney, Sydney, NSW 2006, Australia
4Fogarty International Center, National Institutes of Health, Bethesda, MD, USA
5Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium

Tài liệu tham khảo

Badrane, 2001, Host switching in Lyssavirus history from the Chiroptera to the Carnivora orders, J. Virol., 75, 8096, 10.1128/JVI.75.17.8096-8104.2001 Bielejec, 2011, SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics, Bioinformatics, 27, 2910, 10.1093/bioinformatics/btr481 Bourhy, 1999, Ecology and evolution of rabies virus in Europe, J. Gen. Virol., 80, 2545, 10.1099/0022-1317-80-10-2545 Capello, 2010, Impact of emergency oral rabies vaccination of foxes in northeastern Italy, 28 December 2009-20 January 2010: preliminary evaluation, Euro Surveill., 15, 19617, 10.2807/ese.15.28.19617-en De Benedictis, 2008, Emergence of fox rabies in north-eastern Italy, Euro Surveill., 13, 10.2807/ese.13.45.19033-en De Benedictis, 2009, Update on fox rabies in Italy and Slovenia, Rabies Bull. Eur., 33, 5 Drummond, 2007, BEAST: bayesian evolutionary analysis by sampling trees, BMC Evol. Biol., 7, 214, 10.1186/1471-2148-7-214 Drummond, 2005, Bayesian coalescent inference of past population dynamics from molecular sequences, Mol. Biol. Evol., 22, 1185, 10.1093/molbev/msi103 EU European Commission, 2002. The oral vaccination of foxes against rabies, Report of the Scientific Committee on Animal Welfare Adopted on 23 October 2002. Guindon, 2003, A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood, Syst. Biol., 52, 696, 10.1080/10635150390235520 Lemey, 2009, Bayesian phylogeography finds its roots, PLoS Comput. Biol., 5, e1000520, 10.1371/journal.pcbi.1000520 Lojkic, 2012, Diversity of currently circulating rabies virus strains in Croatia, Berl. Munch. Tierarztl. Wochenschr., 125, 249 Maddison, 1989, Interactive analysis of phylogeny and character evolution using the computer program MacClade, Folia Primatol. (Basel), 53, 190, 10.1159/000156416 McElhinney, 2011, Molecular diversity and evolutionary history of rabies virus strains circulating in the Balkans, J. Gen. Virol., 92, 2171, 10.1099/vir.0.032748-0 Minin, 2008, Counting labeled transitions in continuous-time Markov models of evolution, J. Math. Biol., 56, 391, 10.1007/s00285-007-0120-8 Minin, 2008, Fast, accurate and simulation-free stochastic mapping, Philos. Trans. R. Soc. Lond. B Biol. Sci., 363, 3985, 10.1098/rstb.2008.0176 Monne, 2011, A distinct CDV genotype causing a major epidemic in Alpine wildlife, Vet. Microbiol., 150, 63, 10.1016/j.vetmic.2011.01.009 Mulatti, 2011, Geographical information systems in the management of the 2009–2010 emergency oral anti-rabies vaccination of foxes in north-eastern Italy, Geospat. Health, 5, 217, 10.4081/gh.2011.174 Mulatti, 2012, Emergency oral rabies vaccination of foxes in Italy in 2009–2010: identification of residual rabies foci at higher altitudes in the Alps, Epidemiol. Infect., 140, 591, 10.1017/S0950268811001282 Mutinelli, 2004, Rabies in Italy, Yugoslavia, Croatia, Bosnia, Slovenia, Macedonia, Albania and Greece, 98 Nadin-Davis, 2011, Molecular phylogenetics of the lyssaviruses–insights from a coalescent approach, Adv. Virus Res., 79, 203, 10.1016/B978-0-12-387040-7.00011-1 Nouvellet, 2013, Rabies and canine distemper virus epidemics in the red fox population of northern Italy (2006–2010), PloS ONE, 8, e61588, 10.1371/journal.pone.0061588 Posada, 1998, MODELTEST: testing the model of DNA substitution, Bioinformatics, 14, 817, 10.1093/bioinformatics/14.9.817 Rihtaric, 2011, Molecular epidemiology of the rabies virus in Slovenia 1994–2010, Vet. Microbiol., 152, 181, 10.1016/j.vetmic.2011.04.019 Ronquist, 2003, MrBayes 3: bayesian phylogenetic inference under mixed models, Bioinformatics, 19, 1572, 10.1093/bioinformatics/btg180 Smith, 1992, Epidemiologic and historical relationships among 87 rabies virus isolates as determined by limited sequence analysis, J. Infect. Dis., 166, 296, 10.1093/infdis/166.2.296 Suchard, 2009, Many-core algorithms for statistical phylogenetics, Bioinformatics, 25, 1370, 10.1093/bioinformatics/btp244 Wilgenbusch, 2003, Inferring evolutionary trees with PAUP∗, Curr. Protoc. Bioinformatics, 10.1002/0471250953.bi0604s00