The influence of reduced oxygen availability on pathogenicity and gene expression in Mycobacterium tuberculosis

Tuberculosis - Tập 84 Số 3-4 - Trang 205-217 - 2004
Joanna Bacon1, Brian W. James1, Lorenz Wernisch2, Ann Williams1, Kim A Morley1, Graham Hatch1, Joseph A. Mangan3, Jason Hinds3, Neil G. Stoker4, Philip D. Butcher3, Philip D. Marsh1
1TB Research Group, Health Protection Agency, Porton Down, CAMR, Salisbury, Wiltshire SP4 0JG, UK
2School of Crystallography, Birkbeck College, University of London, Malet Street, London WC1E 7HX, UK
3Bacterial Microarray Group, Department of Cellular and Molecular Medicine, St George's Hospital Medical School, Cranmer Terrace, London SW17 0RE, UK
4Department of Pathology and Infectious Diseases, Royal Veterinary College, Royal College Street, London NW1 0TU, UK

Tóm tắt

Từ khóa


Tài liệu tham khảo

Dannenberg, 1994, Roles of cytotoxic delayed-type hypersensitivity and macrophage-activating cell-mediated immunity in the pathogenesis of tuberculosis, Immunobiology, 191, 461, 10.1016/S0171-2985(11)80452-3

Sherman, 2001, Regulation of the Mycobacterium tuberculosis hypoxic response gene encoding alpha -crystallin, Proc Natl Acad Sci USA, 98, 7534, 10.1073/pnas.121172498

Wayne, 1982, Glyoxylate metabolism and adaptation of Mycobacterium tuberculosis to survival under anaerobic conditions, Infect Immun, 37, 1042, 10.1128/IAI.37.3.1042-1049.1982

Wayne, 1996, An in vitro model for sequential study of shiftdown of Mycobacterium tuberculosis through two stages of non replicating persistence, Infect Immun, 64, 2062, 10.1128/IAI.64.6.2062-2069.1996

Betts, 2002, Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling, Mol Microbiol, 43, 717, 10.1046/j.1365-2958.2002.02779.x

Park, 2003, Rv3133c/dosR is a transcription factor that mediates the hypoxic response of Mycobacterium tuberculosis, Mol Microbiol, 48, 833, 10.1046/j.1365-2958.2003.03474.x

Herbert, 1956, The continuous culture of bacteria, J Gen Microbiol, 14, 601, 10.1099/00221287-14-3-601

Gmuender, 2001, Gene expression changes triggered by exposure of Haemophilus influenzae to novobiocin or ciprofloxacin, Genome Res, 11, 28, 10.1101/gr.157701

Purkayastha, 2002, Identification of a Mycobacterium tuberculosis putative classical nitroreductase gene whose expression is co-regulated with that of the acr gene within macrophages, in standing versus shaking cultures, and under low oxygen conditions, Infect Immun, 70, 1518, 10.1128/IAI.70.3.1518-1529.2002

Stewart, 2002, Dissection of the heat-shock response in Mycobacterium tuberculosis using mutants and microarrays, Microbiology, 148, 3129, 10.1099/00221287-148-10-3129

Wernisch, 2003, Analysis of whole-genome microarray replicates using mixed models, Bioinformatics, 19, 53, 10.1093/bioinformatics/19.1.53

James, 2002, In vitro gene expression dissected, Comparative Funct Genomics, 3, 345, 10.1002/cfg.184

James, 2000, The physiology and pathogenicity of Mycobacterium tuberculosis grown under controlled conditions in a defined medium, J Appl Microbiol, 88, 669, 10.1046/j.1365-2672.2000.01020.x

Williams, 2000, Comparison of the protective efficacy of bacille calmette-Guerin vaccination against aerosol challenge with Mycobacterium tuberculosis and Mycobacterium bovis, Clin Infect Dis, 30, S299, 10.1086/313878

Belisle, 1998, Isolation of genomic DNA from mycobacteria, Methods Mol Biol, 101, 31

Searle, 1992

Oehlert, 2000

Wolfinger, 2001, Assessing gene significance from cDNA microarray expression data via mixed models, J Comput Biol, 8, 625, 10.1089/106652701753307520

Benjamini, 1995, Controlling the false discovery rate, J R Statist Soc B,, 57, 289

Voskuil, 2003, Inhibition of respiration by nitric oxide induces a Mycobacterium tuberculosis dormancy program, J Exp Med, 198, 705, 10.1084/jem.20030205

Keevil, 1989, Influence of iron-limited and replete continuous culture on the physiology and virulence of Neisseria gonorrhoeae, J Gen Microbiol, 135, 851

Marsh, 1994, The effect of growth rate and haemin on the virulence and proteolytic activity of Porphyromonas gingivalis W50, Microbiology, 140, 861, 10.1099/00221287-140-4-861

Manca, 1999, Mycobacterium tuberculosis CDC1551 induces a more vigorous host response in vivo and in vitro, but is not more virulent than other clinical isolates, J Immunol, 162, 6740, 10.4049/jimmunol.162.11.6740

Bianchi, 1995, Interruption of the ferredoxin (flavodoxin) NADP+oxidoreductase gene of Escherichia coli does not effect anaerobic growth but increases sensitivity to paraquat, J Bacteriol, 177, 4528, 10.1128/jb.177.15.4528-4531.1995

Blaschkowski, 1982, Routes of flavodoxin and ferredoxin reduction in E. coli. CoA- acylating pyruvate: flavodoxin and NADPH, Eur J Biochem, 123, 563, 10.1111/j.1432-1033.1982.tb06569.x

Barker, 1966, Mechanism of the Pasteur effect, Nature, 211, 547, 10.1038/211547a0

Hutter, 1999, Up-regulation of narX, encoding a putative ‘fused nitrate reductase’ in anaerobic dormant Mycobacterium bovis BCG, FEMS Microbiol Lett, 178, 63, 10.1111/j.1574-6968.1999.tb13760.x

Wayne, 1998, Nitrate reduction as a marker for hypoxic shiftdown of Mycobacterium tuberculosis, Tuberc Lung Dis, 79, 127, 10.1054/tuld.1998.0015

De Voss, 2000, The salicylate-derived mycobactin siderophores of Mycobacterium tuberculosis are essential for growth in macrophages, Proc Natl Acad Sci USA, 97, 1252, 10.1073/pnas.97.3.1252

Collins, 2003, The role of iron in infections with intracellular bacteria, Immunol Lett, 85, 193, 10.1016/S0165-2478(02)00229-8

Manganelli, 2001, The Mycobacterium tuberculosis ECF sigma factor sigma E, Mol Microbiol, 41, 423, 10.1046/j.1365-2958.2001.02525.x

Schnappinger, 2003, Transcriptional adaptation of Mycobacterium tuberculosis within macrophages, J Exp Med, 198, 693, 10.1084/jem.20030846

Horswill, 2001, In vitro conversion of propionate to pyruvate by Salmonella enterica enzymes, Biochemistry, 40, 4703, 10.1021/bi015503b

Textor, 1997, Propionate oxidation in E. coli, Arch Microbiol, 168, 428, 10.1007/s002030050518

Minnikin, 2002, The methyl-branched fortifications of Mycobacterium tuberculosis, Chem Biol, 9, 545, 10.1016/S1074-5521(02)00142-4

Yano, 1966, Propionate incorporation into mycocerosic acid by resting cells of Mycobacterium bovis, Biochim Biophys Acta, 116, 593, 10.1016/0005-2760(66)90133-0

www.sghms.ac.uk/depts/medmicro/bugs.

http://www.ArrayIt.com.

www.cryst.bbk.ac.uk/∼wernisch/yasma.html.