The gut microbiota in human energy homeostasis and obesity

Hamady, 2009, Microbial community profiling for human microbiome projects: Tools, techniques, and challenges, Genome Res., 19, 1141, 10.1101/gr.085464.108

Ursell, 2014, The intestinal metabolome: an intersection between microbiota and host, Gastroenterology, 146, 1470, 10.1053/j.gastro.2014.03.001

Tagliabue, 2013, The role of gut microbiota in human obesity: recent findings and future perspectives, Nutr. Metab. Cardiovasc. Dis., 23, 160, 10.1016/j.numecd.2012.09.002

Tehrani, 2012, Obesity and its associated diseases: a role for microbiota?, Neurogastroenterol. Motil., 24, 305, 10.1111/j.1365-2982.2012.01895.x

2012, Structure, function and diversity of the health human microbiome, Nature, 486, 207, 10.1038/nature11234

Turnbaugh, 2009, A core gut microbiome in obese and lean twins, Nature, 457, 480, 10.1038/nature07540

Ravussin, 2012, Response of gut microbiota to diet composition and weight loss in lean and obese mice, Obesity (Silver Spring), 20, 736, 10.1038/oby.2011.111

Walters, 2014, Meta-analyses of human gut microbes associated with obesity and IBD, FEBS Lett., 588, 4223, 10.1016/j.febslet.2014.09.039

Backhed, 2004, The gut microbiota as an environmental factor that regulates fat storage, Proc. Natl. Acad. Sci. U.S.A., 101, 15718, 10.1073/pnas.0407076101

Turnbaugh, 2006, An obesity-associated gut microbiome with increased capacity for energy harvest, Nature, 444, 1027, 10.1038/nature05414

Ridaura, 2013, Gut microbiota from twins discordant for obesity modulates metabolism in mice, Science, 341, 1241214, 10.1126/science.1241214

Duca, 2014, Replication of obesity and associated signaling pathways through transfer of microbiota from obese-prone rats, Diabetes, 63, 1624, 10.2337/db13-1526

Kovacs, 2011, Genotype is a stronger determinant than sex of the mouse gut microbiota, Microb. Ecol., 61, 423, 10.1007/s00248-010-9787-2

Ericsson, 2015, Effects of vendor and genetic background on the composition of the fetal microbiota of inbred mice, PLoS ONE, 10, e0116704, 10.1371/journal.pone.0116704

Parks, 2013, Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice, Cell Metab., 17, 141, 10.1016/j.cmet.2012.12.007

Wu, 2011, Linking long-term dietary patterns with but microbial enterotypes, Science, 334, 105, 10.1126/science.1208344

Larson, 2013, Home/family, peer, school, and neighborhood correlates of obesity in adolescents, Obesity (Silver Spring), 21, 1858, 10.1002/oby.20360

Guaraldi, 2012, Effect of breast and formula feeding on but microbiota shaping in newborns, Front. Cell Infect. Microbiol., 2, 94, 10.3389/fcimb.2012.00094

Huurre, 2008, Mode of delivery – effects on gut microbiota and humoral immunity, Neonatology, 93, 236, 10.1159/000111102

Mueller, 2015, The infant microbiome development: mom matters, Trends Mol. Med., 21, 109, 10.1016/j.molmed.2014.12.002

Costello, 2012, The application of ecological theory toward an understanding of the human microbiome, Science, 336, 1256, 10.1126/science.1224203

Mueller, 2015, Prenatal exposure to antibiotics, cesarean section and risk of childhood obesity, Int. J. Obes. (Lond.), 39, 665, 10.1038/ijo.2014.180

Mesquita, 2013, Cesarean section is associated with increased peripheral and central adiposity in young adulthood: cohort study, PLoS ONE, 8, e66827, 10.1371/journal.pone.0066827

Blustein, 2013, Association of caesarean delivery with child adiposity from age 6 weeks to 15 years, Int. J. Obes. (Lond.), 37, 900, 10.1038/ijo.2013.49

Ajslev, 2011, Childhood overweight after establishment of the gut microbiota: the role of delivery mode, pre-pregnancy weight and early administration of antibiotics, Int. J. Obes. (Lond.), 35, 522, 10.1038/ijo.2011.27

Murphy, 2014, The ISAAC Phase Three Study Group. Antibiotic treatment during infancy and increased body mass index in body: an international cross-sectional study, Int. J. Obes. (Lond.), 38, 1115, 10.1038/ijo.2013.218

Cox, 2014, Altering the intestinal microbiota during a critical development window has lasting metabolic consequences, Cell, 158, 705, 10.1016/j.cell.2014.05.052

Yatsunenko, 2012, Human gut microbiome viewed across age and geography, Nature, 486, 222, 10.1038/nature11053

Goodrich, 2014, Human genetics shape the gut microbiome, Cell, 159, 789, 10.1016/j.cell.2014.09.053

Schnorr, 2014, Gut microbiome of the Hadza hunter-gatherers, Nat. Commun., 5, 3654, 10.1038/ncomms4654

Martinez, 2015, The gut microbiota of rural Papua New Guineans: composition, diversity patterns, and ecological processes, Cell Rep., 11, 527, 10.1016/j.celrep.2015.03.049

Faith, 2013, The long-term stability of the human gut microbiota, Science, 341, 1237439, 10.1126/science.1237439

Ley, 2006, Microbial ecology: human gut microbes associated with obesity, Nature, 444, 1022, 10.1038/4441022a

Cotillard, 2013, Dietary intervention impact on gut microbial gene richness, Nature, 500, 585, 10.1038/nature12480

Jumpertz, 2011, Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans, Am. J. Clin. Nutr., 94, 58, 10.3945/ajcn.110.010132

Du, 2009, Dietary energy density in relation to subsequent changes of weight and waist circumference in European men and women, PLoS ONE, 4, e5339, 10.1371/journal.pone.0005339

Forouhi, 2009, Dietary fat intake and subsequent weight change in adults: results from the European Prospective Investigation in Cancer and Nutrition cohorts, Am. J. Clin. Nutr., 90, 1632, 10.3945/ajcn.2009.27828

Leibel, 2010, Metabolic response to weight perturbation, 121

Myers, 2010, Obesity and leptin resistance: distinguishing cause from effect, Trends Endocrinol. Metab., 21, 643, 10.1016/j.tem.2010.08.002

Weyer, 2000, Energy metabolism after 2y of energy restriction: the biosphere 2 experiment, Am. J. Clin. Nutr., 72, 946, 10.1093/ajcn/72.4.946

Ravussin, 1985, Energy expenditure before and during energy restriction in obese patients, Am. J. Clin. Nutr., 41, 753, 10.1093/ajcn/41.4.753

Bellocchio, 2013, Activation of the sympathetic nervous system mediates hypophagic and anxiety-like effects of CB1 receptor blockade, Proc. Natl. Acad. Sci. U.S.A., 110, 4786, 10.1073/pnas.1218573110

Lang, 1997, Effect of sympathoinhibition on exercise performance in patients with heart failure, Circulation, 96, 238, 10.1161/01.CIR.96.1.238

Aronne, 1995, Autonomic nervous system activity in weight gain and weight loss, Am. J. Physiol., 38, R222

Jakubiec-Puka, 1999, Effect of thyroid hormone on the myosin heavy chain isoforms in slow and fast muscles of the rat, Acta Biochim. Pol., 46, 823, 10.18388/abp.1999_4154

Baldwin, 2011, Effects of weight loss and leptin on skeletal muscle in human subjects, Am. J. Physiol. Endocrinol. Metab., 301, R1259

Rosenbaum, 2008, Long-term persistence of adaptive thermogenesis in subjects who have maintained a reduced body weight, Am. J. Clin. Nutr., 88, 906, 10.1093/ajcn/88.4.906

Sumithran, 2011, Long-term persistence of hormonal adaptations to weight loss, N. Eng. J. Med., 365, 1597, 10.1056/NEJMoa1105816

DelParigi, 2004, Persistence of abnormal neural response to a meal in postobese individuals, Int. J. Obes. (Lond.), 28, 10.1038/sj.ijo.0802558

McGuire, 1999, Behavioral strategies of individuals who have maintained long-term weight losses, Obes. Res., 7, 334, 10.1002/j.1550-8528.1999.tb00416.x

Phelan, 2011, Cognitive interference from food cues in weight loss maintainers, normal weight, and obese individuals, Obesity, 19, 69, 10.1038/oby.2010.138

Wing, 2005, Long-term weight maintenance, Am. J. Clin. Nutr., 82, 222S, 10.1093/ajcn/82.1.222S

Cannon, 2004, Brown adipose tissue: function and physiological significance, Physiol. Rev., 84, 277, 10.1152/physrev.00015.2003

Vosselman, 2013, Energy dissipation in brown adipose tissue: from mice to men, Mol. Cell. Endocrinol., 379, 43, 10.1016/j.mce.2013.04.017

Okubo, 2013, KK/Ta mice administered Lactobacillus plantarum strain no. 14 have lower adiposity and higher insulin sensitivity, Biosci. Microbiota Food Health, 32, 93, 10.12938/bmfh.32.93

Mestdagh, 2012, Gut microbiota modulate the metabolism of brown adipose tissue in mice, J. Proteome Res., 11, 620, 10.1021/pr200938v

Bindels, 2015, Towards a more comprehensive concept for prebiotics, Nat. Rev. Gastroenterol. Hepatol., 12, 303, 10.1038/nrgastro.2015.47

Lee, 2006, Human originated bacteria, Lactobacillus rhamnosus PL60, produce conjugated linoleic acid and show anti-obesity effects in diet-induced obese mice, Biochem. Biophys. Acta, 1761, 736

Kocelak, 2013, Resting energy expenditure and gut microbiota in obese and normal weight subjects, Eur. Rev. Med. Pharacol. Sci., 17, 2816

Harstra, 2011, Insights into the role of the microbiome in obesity and type 2 diabetes, Diab. Care, 38, 1159

Macfarlane, 2006, Review article: prebiotics in the gastrointestinal tract, Aliment. Pharmacol. Ther., 24, 701, 10.1111/j.1365-2036.2006.03042.x

Cani, 2009, Gut microbiota fermentation of prebiotics increases satietogenic and incretin gut peptide production with consequences for appetite sensation and glucose response after a meal, Am. J. Clin. Nutr., 90, 1236, 10.3945/ajcn.2009.28095

Moran, 2011, Intestinal feedback signaling and satiety, Physiol. Behav., 105, 77, 10.1016/j.physbeh.2011.02.005

O’Donovan, 2003, Lipase inhibition attenuates the acute inhibitory effects of oral fat on food intake in healthy subjects, Br. J. Nutr., 90, 849, 10.1079/BJN2003971

Kashyap, 2013, Complex interactions among diet, gastrointestinal transit, and gut microbiota in humanized mice, Gastroenterology, 144, 967, 10.1053/j.gastro.2013.01.047

Schele, 2013, The gut microbiota reduces leptin sensitivity and the expression of the obesity-suppressing neuropeptides proglucagon (GCG) and brain-derived neurotrophic factor (BDNF) in the central nervous system, Endocrinology, 154, 3643, 10.1210/en.2012-2151

Everard, 2014, Gut microbiota and GLP-1, Rev. Endocr. Metab. Dis., 15, 189, 10.1007/s11154-014-9288-6

Everard, 2011, Responses of gut microbiota and glucose and lipid metabolism to prebiotics in genetic obese and diet-induced leptin-resistant mice, Diabetes, 60, 2775, 10.2337/db11-0227

Maslowski, 2009, Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43, Nature, 461, 1282, 10.1038/nature08530

Lin, 2012, Butyrate and propionate protect against diet-induced obesity and regulate gut hormones via free fatty acid receptor-3 independent mechanisms, PLoS ONE, 7, e35240, 10.1371/journal.pone.0035240

de Git, 2015, Leptin resistance in diet-induced obesity: the role of hypothalamic inflammation, Obes. Rev., 16, 207, 10.1111/obr.12243

McNay, 2012, High fat diet causes rebound weight gain, Mol. Metab., 2, 103, 10.1016/j.molmet.2012.10.003

Hester, 2015, Fecal microbes, short chain fatty acids, and colorectal cancer across racial/ethnic groups, World J. Gastroenterol., 21, 2759, 10.3748/wjg.v21.i9.2759

Kimura, 2014, The SCFA receptor GPR43 and energy metabolism, Front. Endocrinol., 5, 85, 10.3389/fendo.2014.00085

Inoue, 2014, Regulation of energy homeostasis by GPR41, Front. Endocrinol., 5, 81, 10.3389/fendo.2014.00081

Waldecker, 2008, Inhibition of histone-deacetylase activity by short-chain fatty acids and some polyphenol metabolites formed in the colon, J. Nutr. Biochem., 19, 587, 10.1016/j.jnutbio.2007.08.002

Vanhoutvin, 2009, Butyrate-induced transcriptional changes in human colonic mucosa, PLoS ONE, 4, e6759, 10.1371/journal.pone.0006759

Matsuki, 2013, Epithelial cell proliferation arrest induced by lactate and acetate from Lactobacillus casei and Bifidobacterium breve, PLoS ONE, 8, e64053, 10.1371/journal.pone.0063053

Yamashita, 2009, Effects of acetate on lipid metabolism in muscles and adipose tissues of type 2 diabetic Otsuka Long–Evans Tokushima fatty (OLETF) rats, Biosci. Biotechnol. Biochem., 73, 570, 10.1271/bbb.80634

Le Chatelier, 2013, Richness of human gut microbiome correlates with metabolic markers, Nature, 500, 541, 10.1038/nature12506

Ley, 2006, Ecological and evolutionary forces shaping microbial diversity in the human intestines, Cell, 124, 837, 10.1016/j.cell.2006.02.017

Eckburg, 2005, Diversity of the human intestinal microbial flora, Science, 306, 1635, 10.1126/science.1110591

Xu, 2003, A genomic view of the human–Bacteroides thetaiotaomicron symbiosis, Science, 299, 2074, 10.1126/science.1080029

Xu, 2007, Evolution of symbiotic bacteria in the distal human intestine, PLoS Biol., 5, e156, 10.1371/journal.pbio.0050156

Gaci, 2014, Archaea and the human gut: new beginning of an old story, World J. Gastroenterol., 20, 16062, 10.3748/wjg.v20.i43.16062

Remely, 2015, Gut microbiota composition correlates with changes in body fat content due to weight loss, Benef. Microbes, 6, 431, 10.3920/BM2014.0104

Strauss, 2008, Phenotypic and genomic analyses of clinical Fusobacterium nucleatum and Fusobacterium periodonticum isolates form the human gut, Anaerobe, 14, 301, 10.1016/j.anaerobe.2008.12.003

Castellarin, 2012, Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma, Genome Res., 22, 299, 10.1101/gr.126516.111

Soo, 2014, An expanded genomic representation of the phylum Cyanobacteria, Genome Biol. Evol., 6, 1031, 10.1093/gbe/evu073

Everard, 2013, Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity, Proc. Nat. Acad. Sci. U.S.A., 110, 9066, 10.1073/pnas.1219451110

Kilborn, 2002, Review of growth plate closure compared with age at sexual maturity and lifespan in laboratory animals, Contemp. Top. Lab. Anim. Sci., 41, 21

Himms-Hagen, 1999, Physiological roles of the leptin endocrine system: differences between mice and humans, Crit. Rev. Clin. Lab. Sci., 36, 575, 10.1080/10408369991239259

Hall, 2012, Metabolism of mice and men: mathematical modeling of body weight dynamics, Curr. Opin. Clin. Nutr. Metab. Care, 15, 418, 10.1097/MCO.0b013e3283561150

Bartelt, 2014, Adipose tissue browning and metabolic health, Nat. Rev. Endocrinol., 10, 24, 10.1038/nrendo.2013.204

Hartstra, 2015, Insights into the role of the microbiome in obesity and type 2 diabetes, Diab. Care, 38, 159, 10.2337/dc14-0769

Cani, 2007, Metabolic endotoxemia initiates obesity and insulin resistance, Diabetes, 56, 1761, 10.2337/db06-1491

Belkaid, 2014, Role of the microbiota in immunity and inflammation, Cell, 157, 121, 10.1016/j.cell.2014.03.011

Cani, 2008, Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat induced obesity and diabetes in mice, Diabetes, 57, 1470, 10.2337/db07-1403

Gao, 2009, Butyrate improves insulin sensitivity and increases energy expenditure in mice, Diabetes, 58, 1509, 10.2337/db08-1637