The first genetic map of pigeon pea based on diversity arrays technology (DArT) markers

Akbari M., Wenzl P., Caig V., Carling J., Xia L., Yang S. et al. 2006 Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome. Theor. Appl. Genet. 113, 1409–1420.

Anderson J. A., Churchill G. A., Sutrique J. E., Tanksley S. D. and Sorrells M. E. 1993 Optimizing parental selection for genetic linkage maps. Genome 36, 181–186.

Barcaccia G., Meneghetti S., Albertini E., Triest L. and Lucchin M. 2003 Linkage mapping in tetraploid willows: segregation of molecular markers and estimation of linkage phases support an allotetraploid structure for Salix alba × Salix fragilis interspecific hybrids. Heredity 90, 169–180.

Blanco A., Bellomo M. P., Cenci A., De Giovanni C., D’Ovidio R., Iacono E. et al. 1998 A genetic linkage map of durum wheat. Theor. Appl. Genet. 97, 721–728.

Burns M. J., Edwards K. J., Newbury H. J., Ford-Lloyd B. V. and Baggott C. D. 2001 Development of simple sequence repeat (SSR) markers for the assessment of gene flow and genetic diversity in pigeonpea (Cajanus cajan). Mol. Ecol. Notes 1, 283–285.

Cuc L. M., Mace E. S., Crouch J. H., Quang V. D., Long T. D. and Varshney R. K. 2008 Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea). BMC Plant Biol. 8, 55.

Diatchenko L., Lau Y. F. C., Campbell A. P., Chenchik A., Moqadam F., Huang B. et al. 1996 Suppression subtractive hybridization: A method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl. Acad. Sci. USA 93, 6025–6030.

Jaccoud D., Peng K., Feinstein D. and Kilian A. 2001 Diversity Arrays: a solid state technology for sequence information independent genotyping. Nucleic Acid. Res. 29, e25.

Kilian A., Huttner E., Wenzl P., Jaccoud D., Carling J., Caig V. et al. 2005 The fast and the cheap: SNP and DArT-based whole genome profiling for crop improvement. In Proceedings of the International Congress ‘In the wake of the double helix: from the green revolution to the gene revolution’ (ed. R. Tuberosa, R. L. Phillips and M. Gale), pp 443–461. Avenue media, Bologna, Italy.

Lander E. S., Green P., Abrahamson J., Barlow A. and Daly M. J. 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1, 174–181.

Lezar S., Myburg A. A., Berger D. K., Wingfield M. J. and Wingfield B. D. 2004 Development and assessment of microarray-based DNA fingerprinting in Eucalyptus grandis. Theor. Appl. Genet. 109, 1329–1336.

Liang N., Bao Z., Temnykh S., Cheng Z., Jiang J., Wing R. A. et al. 2002 Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice. Genetics 161, 1293–1305.

Livingstone K. D., Lackney V. K., Blauth J. R., Van Wijk R. and Jahn M. K. 1999 Genome mapping in Capsicum and evolution of genome structure in Solanaceae. Genetics 152, 1183–1202.

Lu H., Romero-Severson J. and Bernardo R. 2002 Chromosomal regions associated with segregation distortion in maize. Theor. Appl. Genet. 105, 622–628.

Mignouna H. D., Mank R. A., Ellis T. H. N., van den Bosch N., Asiedu R., Ng S. Y. C. and Peleman J. 2002 A genetic linkage map of guinea yam (Dioscorea rotundata Poir.) based on AFLP markers. Theor. Appl. Genet. 105, 716–725.

Moore G. 2000 Cereal chromosome structure, evolution, and pairing. Annu. Rev. Plant Physiol. Plant. Mol. Biol. 51, 195–222.

Renganayaki K., Jessup R. W., Burson B. L., Hussey M. A. and Read J. C. 2005 Identification of male-specific AFLP markers in dioecious texas bluegrass. Crop. Sci. 45, 2529–2539.

Saal B. and Wricke G. 2008 Clustering of amplified fragment length polymorphism markers in a linkage map of rye. Plant Breed. 121, 117–123.

Sandal N., Krusell L., Radutoiu S., Olbryt M., Pedrosa A., Stracke S. et al. 2002 A genetic linkage map of the model legume Lotus japonicus and strategies for fast mapping of new loci. Genetics 161, 1673–1683.

Tanksley S. D., Ganal M. W., Prince J. P. and de Vicente M. C. 1992 High density molecular linkage maps of the tomato and potato genomes: biological inferences and practical applications. Genetics 132, 1141–1160.

Varshney R. K., Hoisington D. A. and Tyagi A. K. 2006 Advances in cereal genomics and applications in crop breeding. Trends Biotechnol. l 24, 490–499.

Varshney R. K., Close T. J., Singh N. K., Hoisington D. A. and Cook D. R. 2009 Orphan legume crops enter the genomics era! Curr. Opin. Plant Biol. 12, 202–210.

Varshney R. K., Penmetsa R. V., Dutta S., Kulwal P. L., Saxena R. K., Datta S. et al. 2010 Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Mol. Breed. 26, 393–408.

Wang S., Basten C. J. and Zeng Z. B. 2007 Windows QTL cartographer 2.5. http://statgen.ncsu.edu/qtlcart/WQTLCart.htm .

Wenzl P., Carling J., Kudrna D., Jaccoud D., Huttner E., Kleinhofs A. and Kilian A. 2004 Diversity arrays technology (DArT) for whole-genome profiling of barley. Proc. Natl. Acad. Sci. USA 101, 9915–9920.

Wittenberg A. H., Van der Lee T., Cayla C., Kilian A., Visser R. G. and Schouten H. J. 2005 Validation of the high-throughput marker technology DArT using the model plant Arabidopsis thaliana. Mol. Genet. Genomics 274, 30–39.

Xia L., Peng K., Yang S., Wenzl P., Carmen de Vicente M., Fregene M. and Kilian A. 2005 DArT for high-throughput genotyping of cassava (Manihot esculenta) and its wild relatives. Theor. Appl. Genet. 110, 1092–1098.

Yang S., Pang W., Ash G., Harper J., Carling J., Wenzl P. et al. 2006 Low level of genetic diversity in cultivated pigeonpea compared to its wild relatives is revealed by diversity arrays technology. Theor. Appl. Genet. 113, 585–595.