The essential role of sugar metabolism in the acclimation response of Arabidopsis thaliana to high light intensities
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2003, Plastid protein synthesis is required for plant development in tobacco, Proceedings of the National Academy of Sciences, USA, 100, 15730, 10.1073/pnas.2533668100
2004, Reactive oxygen species: metabolism, oxidative stress, and signal transduction, Annual Review of Plant Biology, 55, 373, 10.1146/annurev.arplant.55.031903.141701
2000, Electron flow to oxygen in higher plants and algae: rates and control of direct photoreduction (Mehler reaction) and rubisco oxygenase, Philosophical Transactions of the Royal Society B: Biological Sciences, 355, 1433, 10.1098/rstb.2000.0704
2005, Chloroplasts as source and target of cellular redox regulation: a discussion on chloroplast redox signals in the context of plant physiology, Journal of Experimental Botany, 56, 1449, 10.1093/jxb/eri161
2004, The acceptor availability at photosystem I and ABA control nuclear expression of 2-Cys peroxiredoxin-A in Arabidopsis thaliana, Plant and Cell Physiology, 45, 997, 10.1093/pcp/pch114
2004, Acclimation of Arabidopsis thaliana to the light environment: the relationship between photosynthetic function and chloroplast composition, Planta, 218, 793, 10.1007/s00425-003-1158-5
2012, Expression of ROS-responsive genes and transcription factors after metabolic formation of H2O2 in chloroplasts, Frontiers in Plant Science, 3, 234
2005, Signaling pathways from the chloroplast to the nucleus, Planta, 222, 743, 10.1007/s00425-005-0021-2
1995, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society B (Methodological), 57, 289, 10.1111/j.2517-6161.1995.tb02031.x
2009, Dynamic plastid redox signals integrate gene expression and metabolism to induce distinct metabolic states in photosynthetic acclimation in Arabidopsis, The Plant Cell, 21, 2715, 10.1105/tpc.108.062018
2012, Unraveling retrograde signaling pathways: finding candidate signaling molecules via metabolomics and systems biology driven approaches, Frontiers in Plant Science, 3, 267
2013, Leaf fructose content is controlled by the vacuolar transporter SWEET17 in Arabidopsis, Current Biology, 23, 697, 10.1016/j.cub.2013.03.021
2012, Evidence for a contribution of ALA synthesis to plastid-to-nucleus signaling, Frontiers in Plant Science, 3, 236
2011, Methods for analysis of photosynthetic pigments and steady-state levels of intermediates of tetrapyrrole biosynthesis, Methods in Molecular Biology, 75, 357
2006, The function of peroxiredoxins in plant organelle redox metabolism, Journal of Experimental Botany, 57, 1697, 10.1093/jxb/erj160
2010, The Arabidopsis thaliana myo-inositol 1-phosphate synthase1 gene is required for myo-inositol synthesis and suppression of cell death, The Plant Cell, 22, 888, 10.1105/tpc.109.071779
2008, The dynamics of photosynthesis, Annual Review of Genetics, 42, 463, 10.1146/annurev.genet.42.110807.091452
2011, Evidence for a SAL1–PAP chloroplast retrograde pathway that functions in drought and high light signaling in Arabidopsis, The Plant Cell, 23, 3992, 10.1105/tpc.111.091033
2011, The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses, The Plant Cell, 23, 701, 10.1105/tpc.110.080788
2011, Recommendations for reporting metabolite data, The Plant Cell, 23, 2477, 10.1105/tpc.111.086272
2009, Redox regulation in photosynthetic organisms: signaling, acclimation, and practical implications, Antioxidants and Redox Signaling, 11, 861, 10.1089/ars.2008.2177
1997, Light control of plant development, Annual Review of Cell and Developmental Biology, 13, 203, 10.1146/annurev.cellbio.13.1.203
1888, Co-relations and their measurement, chiefly from anthropometric data, Proceedings of the Royal Society, 45, 135, 10.1098/rspl.1888.0082
1989, The relationship between the quantum yield of photosynthetic transport and quenching of chlorophyll fluorescence, Biochimica et Biophysica Acta, 990, 87, 10.1016/S0304-4165(89)80016-9
2008, The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress, Plant Physiology, 147, 595, 10.1104/pp.107.115121
2008, The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access, The Plant Journal, 55, 526, 10.1111/j.1365-313X.2008.03510.x
1980, Determination of glutathione and glutathione disulfide using glutathione reductase and 2-vinylpyridine, Analytical Biochemistry, 106, 207, 10.1016/0003-2697(80)90139-6
2009, Chlororespiration and grana hyperstacking: how an Arabidopsis double mutant can survive despite defects in starch biosynthesis and daily carbon export from chloroplasts, Plant Physiology, 149, 515, 10.1104/pp.108.128124
1998, Compensation of decreased triose phosphate/phosphate translocator activity by accelerated starch turnover and glucose transport in transgenic tobacco, Planta, 204, 366, 10.1007/s004250050268
2012, The mysterious rescue of adg1-1/tpt-2—an Arabidopsis thaliana double mutant impaired in acclimation to high light—by exogenously supplied sugars, Frontiers in Plant Sciences, 3, 265
2003, Divergent light-, ascorbate- and oxidative stress dependent regulation of expression of the peroxiredoxin gene family in Arabidopsis thaliana, Plant Physiology, 131, 317, 10.1104/pp.010017
2008, Photosynthetic acclimation: does the dynamic structure and macroorganisation of photosystem II in higher plant grana membranes regulate light harvesting states?, FEBS Journal, 275, 1069, 10.1111/j.1742-4658.2008.06263.x
2013, Light acclimation, retrograde signalling, cell death and immune defences in plants, Plant, Cell and Environment, 36, 736, 10.1111/pce.12018
2008, No single way to understand singlet oxygen signaling in plants, EMBO Reports, 9, 435, 10.1038/embor.2008.57
2009, Plastid signaling to the nucleus: messengers still lost in the mists?, Trends in Genetics, 25, 185, 10.1016/j.tig.2009.02.004
2005, [email protected]: the Golm Metabolome Database, Bioinformatics, 21, 1635, 10.1093/bioinformatics/bti236
2007, Signals from chloroplasts converge to regulate nuclear gene expression, Science, 316, 715, 10.1126/science. 1140516
2005, Singlet oxygen production in photosynthesis, Journal of Experimental Botany, 56, 337
2010, The role of plastidial glucose 6-phosphate/phosphate translocators in vegetative tissues of Arabidopsis thaliana mutants impaired in starch biosynthesis, Plant Biology, 12, 115, 10.1111/j.1438-8677.2010.00349.x
2003, Chloroplast research in the genomic age, Trends in Genetics, 19, 47, 10.1016/S0168-9525(02)00003-3
2001, An unexpected plethora of trehalose biosynthesis genes in Arabidopsis thaliana, Trends in Plant Sciences, 6, 510, 10.1016/S1360-1385(01)02125-2
2010, Expression and functional analyses of EXO70 genes in Arabidopsis implicate their roles in regulating cell type-specific exocytosis, Plant Physiology, 154, 1819, 10.1104/pp.110.164178
1999, The 1-deoxy-d-xylulose-5-phosphate pathway of isoprenoid biosynthesis in plants, Annual Review of Plant Physiology and Plant Molecular Biology, 50, 47, 10.1146/annurev.arplant.50.1.47
1988, Isolation and characterization of a starchless mutant of Arabidopsis thaliana (L.) Heynh lacking ADPglucose pyrophosphorylase activity, Plant Physiology, 86, 1131, 10.1104/pp.86.4.1131
2006, Gas chromatography mass spectrometry-based metabolite profiling in plants, Nature Protocols, 1, 387, 10.1038/nprot.2006.59
2004, Responses of primary and secondary metabolism to sugar accumulation revealed by microarray expression analysis of the Arabidopsis mutant, pho3, Journal of Experimental Botany, 55, 1221, 10.1093/jxb/erh143
1987, Improved method for the isolation ofRNA from plant tissues, Analytical Biochemistry, 163, 16, 10.1016/0003-2697(87)90086-8
2010, Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis, Plant Physiology, 153, 642, 10.1104/pp.109.152553
1998, Multiple comparison procedures updated, Clinical and Experimental Pharmacology and Physiology, 25, 1032, 10.1111/j.1440-1681.1998.tb02179.x
2012, TagFinder: preprocessing software for the fingerprinting and the profiling of gas chromatography-mass spectrometry based metabolome analyses, Methods in Molecular Biology, 860, 255
2013, Light and the E3 ubiquitin ligase COP1/SPA control the protein stability of the MYB transcription factors PAP1 and PAP2 involved in anthocyanin accumulation in Arabidopsis, The Plant Journal, 74, 638, 10.1111/tpj.12153
2001, FLU: a negative regulator of chlorophyll biosynthesis in Arabidopsis thaliana, Proceedings of the National Academy of Sciences, USA, 98, 12826, 10.1073/pnas.221252798
2008, Network discovery pipeline elucidates conserved time of day-specific cis-regulatory modules, PLoS Genetics, 4, e14, 10.1371/journal.pgen.0040014
2009, Reactive oxygen species homeostasis and signaling during drought and salinity stresses, Plant, Cell and Environment, 33, 453
2008, The steady-state level of Mgprotoporphyrin IX is not a determinant of plastid-to-nucleus signaling in Arabidopsis, Proceedings of the National Academy of Sciences, USA, 105, 15184, 10.1073/pnas.0803245105
2008, Tetrapyrrole profiling in Arabidopsis seedlings reveals that retrograde plastid nuclear signaling is not due to Mgprotoporphyrin IX accumulation, Proceedings of the National Academy of Sciences, USA, 105, 15178, 10.1073/pnas.0803054105
1998, Ascorbate and glutathione: keeping active oxygen under control, Annual Review of Plant Physiology and Plant Molecular Biology, 49, 249, 10.1146/annurev.arplant.49.1.249
2000, Peroxide processing in photosynthesis: antioxidant coupling and redox signalling, Philosophical Transactions of the Royal Society B: Biological Sciences, 355, 1465, 10.1098/rstb.2000.0707
2009, ATTED-II provides coexpressed gene networks for Arabidopsis, Nucleic Acids Research, 37, 987, 10.1093/nar/gkn807
2012, Efficient acclimation of the chloroplast antioxidant defence of Arabidopsis thaliana leaves in response to a 10- or 100-fold light increment and the possible involvement of retrograde signals, Journal of Experimental Botany, 63, 1297, 10.1093/jxb/err356
2007, VENNY. An interactive tool for comparing lists with Venn Diagrams
2003, Rapid induction of distinct stress responses after the release of singlet oxygen in Arabidopsis, The Plant Cell, 15, 2320, 10.1105/tpc.014662
2012, Environmental control of plant nuclear gene expression by chloroplast redox signals, Frontiers in Plant Science, 3, 257
2001, Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems, The Plant Cell, 13, 11, 10.1105/tpc.13.1.11
2006, Sugar sensing and signaling in plants: conserved and novel mechanisms, Annual Review of Plant Physiology, 57, 675
2012, Defects in leaf carbohydrate metabolism compromise acclimation to high light and lead to a high chlorophyll fluorescence phenotype in Arabidopsis thaliana., BMC Plant Biology, 12, 8, 10.1186/1471-2229-12-8
2002, An Arabidopsis thaliana knock-out mutant of the chloroplast triose phosphate/phosphate translocator is severely compromised only when starch synthesis, but not starch mobilisation is abolished, The Plant Journal, 32, 685, 10.1046/j.1365-313X.2002.01460.x
1986, Continuous recording of photochemical and non-photochemical chlorophyll fluorescence quenching with a new type of modulation fluorometer, Photosynthesis Research, 10, 51, 10.1007/BF00024185
2013, Arabidopsis basic helix–loop–helix transcription factors MYC2, MYC3, and MYC4 regulate glucosinolate biosynthesis, insect performance, and feeding behavior, The Plant Cell, 25, 3117, 10.1105/tpc.113.115139
2013, R S-talk—how the apoplast, the chloroplast, and the nucleus get the message through, Frontiers in Plant Sciences, 3, 292
1985, Photosynthesis in intact leaves of C3 plants: physics, physiology and rate limitations, Botanical Review, 51, 53, 10.1007/BF02861058
2013, HY5 regulates anthocyanin biosynthesis by inducing the transcriptional activation of the MYB75/PAP1 transcription factor in Arabidopsis, FEBS Letters, 587, 1543, 10.1016/j.febslet.2013.03.037
1998, Sugar regulation of gene expression in plants, Current Opinion in Plant Biology, 1, 230, 10.1016/S1369-5266(98)80109-X
2000, Sugar-induced signal transduction in plants, Annual Review of Plant Physiology and Plant Molecular Biology, 51, 49, 10.1146/annurev.arplant.51.1.49
2004, Linear models and empirical bayes methods for assessing differential expression in microarray experiments, Statistical Applications in Genetics and Molecular Biology, 3
2007, PCA methods—a bioconductor package providing PCA methods for incomplete data, Bioinformatics, 23, 1164, 10.1093/bioinformatics/btm069
2003, Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinIX, Nature, 421, 79, 10.1038/nature01204
2002, Signal transduction between the chloroplast and the nucleus, The Plant Cell, 14, 327, 10.1105/tpc.010446
1993, Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development, Cell, 74, 787, 10.1016/0092-8674(93)90459-4
2007, Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways, BMC Genomics, 8, 125, 10.1186/1471-2164-8-125
2005, Sucrose specific induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75/PAP1 gene, Plant Physiology, 139, 1840, 10.1104/pp.105.066688
2004, Biosynthesis of methionine-derived glucosinolates in Arabidopsis thaliana: recombinant expression and characterization of methylthioalkylmalate synthase, the condensing enzyme of the chain elongation cycle, Planta, 218, 1026, 10.1007/s00425-003-1184-3
2004, MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes, The Plant Journal, 37, 914, 10.1111/j.1365-313X.2004.02016.x
2009, Singlet oxygen in plants: production, detoxification and signaling, Trends in Plant Sciences, 14, 219, 10.1016/j.tplants.2009.01.008
2011, Myo-inositol and beyond—emerging networks under stress, Plant Science, 181, 387, 10.1016/j.plantsci.2011.07.009
2012, Comparison of transcriptional changes to chloroplast and mitochondrial perturbations reveals common and specific responses in Arabidopsis, Frontiers in Plant Science, 3, 281
2012, Molecular mechanisms of photodamage in the photosystem II complex, Biochimica et Biophysica Acta, 1817, 209, 10.1016/j.bbabio.2011.04.014
2010, Proline metabolism and its implications for plant–environment interaction, Arabidopsis Book, 8, e0140, 10.1199/tab.0140
2013, Regulation of flowering by trehalose-6- phosphate signaling in Arabidopsis thaliana, Science, 339, 704, 10.1126/science.1230406
2004, A mutant of Arabidopsis lacking the triose-phosphate/phosphate translocator reveals metabolic regulation of starch breakdown in the light, Plant Physiology, 135, 891, 10.1104/pp.104.040469
2010, EXPO, an exocyst-positive organelle distinct from multivesicular endosomes and autophagosomes, mediates cytosol to cell wall exocytosis in Arabidopsis and tobacco cells, The Plant Cell, 22, 4009, 10.1105/tpc.110.080697
2007, An ‘Electronic Fluorescent Pictograph’ browser for exploring and analyzing large-scale biological data sets, PLoS One, 2, e718, 10.1371/journal.pone.0000718
2004, A model-based background adjustment for oligonucleotide expression arrays, Journal of the American Statistics Association, 99, 909, 10.1198/016214504000000683