The effect of transcription on genetic recombination in poxvirus-infected cells

Ball, 1987, High frequency of homologous recombination in vaccinia virus DNA, J. Virol., 61, 1788, 10.1128/JVI.61.6.1788-1795.1987 Bauer, 1977, A DNA nicking closing enzyme encapsidated in vaccinia virus: partial purification and properties, 74, 1841 Bertholet, 1985, One hundred base pairs of 5″ flanking sequence of a vaccina virus late gene are sufficient to temporally regulate late transcription, 82, 2096 Blackwell, 1986, Recombination between immunoglobulin variable region gene segments is enhanced by transcription, Nature, 324, 585, 10.1038/324585a0 Condit, 1990, Orthopoxvirus genetics, Vol. 163, 1 Court, 1983, Phage lambda's accessory genes, 251 Davison, 1989, Structure of vaccinia virus early promoters, J. Mol. Biol., 210, 749, 10.1016/0022-2836(89)90107-1 Davison, 1989, Structure of vaccinia virus late promoters, J. Mol. Biol., 210, 771, 10.1016/0022-2836(89)90108-3 DeLange, 1986, Sequence nonspecific replication of transfected plasmid DNA in poxvirus-infected cells, 83, 614 DeLange, 1990, The role of telomeres in poxviral DNA replication, Vol. 163, 71 De Wet, 1987, Firefly luciferase gene: structure and expression in mammalian cells, Mol. Cell. Biol., 7, 725, 10.1128/MCB.7.2.725 Droge, 1994, Protein tracking-induced supercoiling of DNA: a tool to regulate DNA transactions in vivo?, BioEssays, 16, 91, 10.1002/bies.950160205 Evans, 1988, High levels of genetic recombination among cotransfected plasmid DNAs in poxvirus-infected mammalian cells, J. Virol., 62, 367, 10.1128/JVI.62.2.367-375.1988 Fisher, 1991, Heteroduplex DNA formation is associated with replication and recombination in poxvirus-infected cells, Genetics, 129, 7, 10.1093/genetics/129.1.7 Gangloff, 1994, Transcription, topoisomerases and recombination, Experientia, 50, 261, 10.1007/BF01924009 Grimm, 1991, The strong ADH1 promoter stimulates mitotic and meiotic recombination at the ADE6 gene of Schizosaccharomyces pombe, Mol. Cell. Biol., 11, 289, 10.1128/MCB.11.1.289 Hohn, 1979, In vivo packaging of lambda and cosmid DNA, Vol. 68, 299 Johnson, 1989, Targetting of nondash;expressed gene in embryonic stem cells via homologous recombination, Science, 245, 1234, 10.1126/science.2506639 Keil, 1984, Cis-acting, recombinationdash;stimulating activity in a fragment of the ribosomal DNA of S. cerevisiae, Cell, 39, 377, 10.1016/0092-8674(84)90016-3 Kohwi, 1993, Transcriptiondash;dependent recombination induced by triple-helix formation, Genes Dev., 7, 1766, 10.1101/gad.7.9.1766 Kovacs, 1994, Modification of the cascade model for regulation of vaccinia virus gene expression: purification of a prereplicative, late-stage-specific transcription factor, J. Virol., 68, 3443, 10.1128/JVI.68.5.3443-3447.1994 Leung, 1992, Transcriptional regulatory elements stimulate recombination in extrachromosomal substrates carrying immunoglobulin switch-region sequences, 89, 4154 Liu, 1987, Supercoiling of the DNA template during transcription, 84, 7024 Lodge, 1990, Mutations that affect Tn5 insertion into pBR322: Importance of local DNA supercoiling, J. Bacteriol., 172, 5956, 10.1128/jb.172.10.5956-5960.1990 McDonald, 1992, Transient expression of the vaccinia virus DNA polymerase is an intrinsic feature of the early phase of infection and is unlinked to DNA replication and late gene expression, J. Virol., 66, 534, 10.1128/JVI.66.1.534-547.1992 Moss, 1990, Regulation of orthopoxvirus gene expression, Vol. 163, 41 Nault, 1994, Intramolecular recombination in polymavirus DNA is a nonconservative process directed from the viral intergenic region, J. Virol., 68, 5439, 10.1128/JVI.68.9.5439-5447.1994 Nickoloff, 1992, Transcription enhances intrachromosomal homologous recombination in mammalian cells, Mol. Cell. Biol., 12, 5311, 10.1128/MCB.12.12.5311 Nickoloff, 1990, Transcription stimulates homologous recombination in mammalian cells, Mol. Cell. Biol., 10, 4837, 10.1128/MCB.10.9.4837 Nicolas, 1989, An initiation site for meiotic gene conversion in the yeast Saccharomyces cerevisiae, Nature, 338, 35, 10.1038/338035a0 Nowakowski, 1978, Isolation of two DNA-binding proteins from the intracellular replication complex of vaccinia virus, Virology, 84, 260, 10.1016/0042-6822(78)90246-5 Parks, 1991, Effect of marker distance and orientation on recombinant formation in poxvirus-infected cells, J. Virol., 65, 1263, 10.1128/JVI.65.3.1263-1272.1991 Parks, 1991, Enhanced recombination associated with the presence of insertion and deletion mutations in poxvirus-infected cells, Virology, 184, 299, 10.1016/0042-6822(91)90846-4 Parks, 1994, Studies of fowlpoxvirus recombination in the generation of recombinant vaccines, Virus Res., 32, 283, 10.1016/0168-1702(94)90078-7 Parks, 1994, Characterization of the Shope fibroma virus DNA ligase gene, Virology, 202, 642, 10.1006/viro.1994.1385 Parsons, 1990, Transcription of orthopoxvirus telomeres at late times during infection, Virology, 175, 69, 10.1016/0042-6822(90)90187-V Polisky, 1976, Interaction of vaccinia DNA-binding proteins with DNA in vitro, Virology, 69, 143, 10.1016/0042-6822(76)90201-4 Schlissel, 1989, Activation of immunoglobulin kappa gene rearrangement correlates with induction of germline kappa gene transcription, Cell, 58, 1001, 10.1016/0092-8674(89)90951-3 Schulz, 1987, Transcriptional activities of mammalian genomes at sites of recombination with foreign DNA, J. Virol., 61, 344, 10.1128/JVI.61.2.344-353.1987 Shenkar, 1991, DNase I-hypersensitive sites and transcription factor-binding motifs within the mouse Eβ meiotic recombination hot spot, Mol. Cell. Biol., 11, 1813, 10.1128/MCB.11.4.1813 Shuman, 1992, DNA strand transfer reactions catalyzed by vaccinia topoisomerase I, J. Biol. Chem., 267, 8620, 10.1016/S0021-9258(18)42488-X Shuman, 1992, Two classes of DNA end-joining reactions catalyzed by vaccinia topoisomerase I, J. Biol. Chem., 267, 16755, 10.1016/S0021-9258(18)41843-1 Spyropoulos, 1988, Delineation of the viral products of recombination in vaccinia virus-infected cells, J. Virol., 62, 1046, 10.1128/JVI.62.3.1046-1054.1988 Stuart, 1991, The target sequence for resolution of poxvirus replicative intermediates is an active late promoter, J. Virol., 65, 61, 10.1128/JVI.65.1.61-70.1991 Thomas, 1989, Elevated recombination rates in transcriptionally active DNA, Cell, 56, 619, 10.1016/0092-8674(89)90584-9 Traktman, 1990, The enzymology of poxvirus DNA replication, Vol. 163, 93 Upton, 1990, Identification and DNA sequence of the Shope fibroma virus DNA topoisomerase gene, Virology, 176, 439, 10.1016/0042-6822(90)90013-H Voelkel-Meiman, 1990, A chromosome containing HOT1 preferentially receives information during mitotic interchromosomal gene conversion, Genetics, 124, 561, 10.1093/genetics/124.3.561 von Schwedler, 1990, Circular DNA is a product of immunoglobulin class switch rearrangement, Nature, 345, 452, 10.1038/345452a0 Vos, 1988, Derepression of a novel class of vaccinia virus genes upon DNA replication, EMBO J., 7, 3487, 10.1002/j.1460-2075.1988.tb03224.x White, 1992, A promoter deletion reduces the rate of mitotic, but not meiotic, recombination at the HIS4 locus in yeast, Curr. Genet., 21, 109, 10.1007/BF00318468 Yamamoto, 1970, Rapid bacteriophage sedimentation in the presence of polyethylene glycol and its application to large scale virus purification, Virology, 40, 734, 10.1016/0042-6822(70)90218-7 Yuen, 1987, Oligonucleotide sequences signaling transcription termination of vaccinia virus early genes, 84, 6417