The effect of ADF/cofilin and profilin on the dynamics of monomeric actin

Zaccai, 2000, How soft is a protein? A protein dynamics force constant measured by neutron scattering, Science, 288, 1604, 10.1126/science.288.5471.1604 Fields, 2001, Review: protein function at thermal extremes: balancing stability and flexibility, Comp. Biochem. Physiol. A Mol. Integr. Physiol., 129, 417, 10.1016/S1095-6433(00)00359-7 Baek, 2008, Modulation of actin structure and function by phosphorylation of Tyr-53 and profilin binding, Proc. Natl. Acad. Sci. U. S. A., 105, 11748, 10.1073/pnas.0805852105 Bugyi, 2006, Formins regulate actin filament flexibility through long range allosteric interactions, J. Biol. Chem., 281, 10727, 10.1074/jbc.M510252200 Chhabra, 2005, The N-terminal fragment of gelsolin inhibits the interaction of DNase I with isolated actin, but not with the cofilin–actin complex, Proteomics, 5, 3131, 10.1002/pmic.200401127 Dedova, 2002, Cofilin and DNase I affect the conformation of the small domain of actin, Biophys. J., 82, 3134, 10.1016/S0006-3495(02)75655-5 Prochniewicz, 1996, Cooperativity in F-actin: binding of gelsolin at the barbed end affects structure and dynamics of the whole filament, J. Mol. Biol., 260, 756, 10.1006/jmbi.1996.0435 Ujfalusi, 2012, Myosin and tropomyosin stabilize the conformation of formin-nucleated actin filaments, J. Biol. Chem., 287, 31894, 10.1074/jbc.M112.341230 Ujfalusi, 2009, Effect of tropomyosin on formin-bound actin filaments, Biophys. J., 96, 162, 10.1529/biophysj.108.138420 Wen, 2008, Control of the ability of profilin to bind and facilitate nucleotide exchange from G-actin, J. Biol. Chem., 283, 9444, 10.1074/jbc.M709806200 Yarmola, 2007, Thymosin beta4: actin regulation and more, Ann. N. Y. Acad. Sci., 1112, 76, 10.1196/annals.1415.008 Kabsch, 1990, Atomic structure of the actin:DNase I complex, Nature, 347, 37, 10.1038/347037a0 Page, 1998, Domain motions in actin, J. Mol. Biol., 280, 463, 10.1006/jmbi.1998.1879 Fujiwara, 2008, Differences in internal dynamics of actin under different structural states detected by neutron scattering, Biophys. J., 94, 4880, 10.1529/biophysj.107.125302 Stokasimov, 2009, Actin isoform-specific conformational differences observed with hydrogen/deuterium exchange and mass spectrometry, J. Biol. Chem., 284, 25421, 10.1074/jbc.M109.013078 Klenchin, 2006, Crystal structure of polymerization-competent actin, J. Mol. Biol., 362, 140, 10.1016/j.jmb.2006.07.001 Bamburg, 1999, Proteins of the ADF/cofilin family: essential regulators of actin dynamics, Annu. Rev. Cell Dev. Biol., 15, 185, 10.1146/annurev.cellbio.15.1.185 Carlier, 1997, Actin depolymerizing factor (ADF/cofilin) enhances the rate of filament turnover: implication in actin-based motility, J. Cell Biol., 136, 1307, 10.1083/jcb.136.6.1307 Nishida, 1985, Opposite effects of cofilin and profilin from porcine brain on rate of exchange of actin-bound adenosine 5′-triphosphate, Biochemistry, 24, 1160, 10.1021/bi00326a015 Andrianantoandro, 2006, Mechanism of actin filament turnover by severing and nucleation at different concentrations of ADF/cofilin, Mol. Cell, 24, 13, 10.1016/j.molcel.2006.08.006 McCullough, 2011, Cofilin-linked changes in actin filament flexibility promote severing, Biophys. J., 101, 151, 10.1016/j.bpj.2011.05.049 Suarez, 2011, Cofilin tunes the nucleotide state of actin filaments and severs at bare and decorated segment boundaries, Curr. Biol., 21, 862, 10.1016/j.cub.2011.03.064 Blanchoin, 1999, Mechanism of interaction of Acanthamoeba actophorin (ADF/cofilin) with actin filaments, J. Biol. Chem., 274, 15538, 10.1074/jbc.274.22.15538 Roland, 2008, Stochastic severing of actin filaments by actin depolymerizing factor/cofilin controls the emergence of a steady dynamical regime, Biophys. J., 94, 2082, 10.1529/biophysj.107.121988 Mockrin, 1980, Acanthamoeba profilin interacts with G-actin to increase the rate of exchange of actin-bound adenosine 5′-triphosphate, Biochemistry, 19, 5359, 10.1021/bi00564a033 Pollard, 1984, Quantitative analysis of the effect of Acanthamoeba profilin on actin filament nucleation and elongation, Biochemistry, 23, 6631, 10.1021/bi00321a054 Korenbaum, 1998, The role of profilin in actin polymerization and nucleotide exchange, Biochemistry, 37, 9274, 10.1021/bi9803675 Kovar, 2003, The fission yeast cytokinesis formin Cdc12p is a barbed end actin filament capping protein gated by profilin, J. Cell Biol., 161, 875, 10.1083/jcb.200211078 Kovar, 2004, Progressing actin: formin as a processive elongation machine, Nat. Cell Biol., 6, 1158, 10.1038/ncb1204-1158 Wriggers, 1998, Cofilin and gelsolin segment-1: molecular dynamics simulation and biochemical analysis predict a similar actin binding mode, J. Mol. Biol., 282, 921, 10.1006/jmbi.1998.2048 Paavilainen, 2008, Structure of the actin-depolymerizing factor homology domain in complex with actin, J. Cell Biol., 182, 51, 10.1083/jcb.200803100 Grintsevich, 2008, Mapping the cofilin binding site on yeast G-actin by chemical cross-linking, J. Mol. Biol., 377, 395, 10.1016/j.jmb.2007.12.073 Kardos, 2009, The effects of ADF/cofilin and profilin on the conformation of the ATP-binding cleft of monomeric actin, Biophys. J., 96, 2335, 10.1016/j.bpj.2008.12.3906 Chik, 1996, The structure of an open state of beta-actin at 2.65A resolution, J. Mol. Biol., 263, 607, 10.1006/jmbi.1996.0602 Schutt, 1993, The structure of crystalline profilin-beta-actin, Nature, 365, 810, 10.1038/365810a0 Minehardt, 2006, The open nucleotide pocket of the profilin/actin x-ray structure is unstable and closes in the absence of profilin, Biophys. J., 90, 2445, 10.1529/biophysj.105.072900 Nyitrai, 1999, The flexibility of actin filaments as revealed by fluorescence resonance energy transfer. The influence of divalent cations, J. Biol. Chem., 274, 12996, 10.1074/jbc.274.19.12996 Nyitrai, 1998, Effect of Ca2+–Mg2+ exchange on the flexibility and/or conformation of the small domain in monomeric actin, Biophys. J., 74, 2474, 10.1016/S0006-3495(98)77955-X Feuer, 1948, Studies on the composition and polymerization of actin, Hung. Acta Physiol., 1, 150 Mossakowska, 1988, An EPR study of the rotational dynamics of actins from striated and smooth muscle and their complexes with heavy meromyosin, Eur. J. Biochem., 175, 557, 10.1111/j.1432-1033.1988.tb14228.x Spudich, 1971, The regulation of rabbit skeletal muscle contraction. I. Biochemical studies of the interaction of the tropomyosin–troponin complex with actin and the proteolytic fragments of myosin, J. Biol. Chem., 246, 4866, 10.1016/S0021-9258(18)62016-2 Houk, 1974, The measurement of actin concentration in solution: a comparison of methods, Anal. Biochem., 62, 66, 10.1016/0003-2697(74)90367-4 Miki, 1987, Spatial relationship between the nucleotide-binding site, Lys-61 and Cys-374 in actin and a conformational change induced by myosin subfragment-1 binding, Eur. J. Biochem., 168, 339, 10.1111/j.1432-1033.1987.tb13425.x Hudson, 1973, Synthesis and characterization of two fluorescent sulfhydryl reagents, Biochemistry, 12, 4154, 10.1021/bi00745a019 Bradford, 1976, A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding, Anal. Biochem., 72, 248, 10.1016/0003-2697(76)90527-3 Bernhardt, 1983, Modification of cytochrome P-450 with fluorescein isothiocyanate, Biochim. Biophys. Acta, 745, 140, 10.1016/0167-4838(83)90042-0 Somogyi, 2007 Vinson, 1998, Interactions of Acanthamoeba profilin with actin and nucleotides bound to actin, Biochemistry, 37, 10871, 10.1021/bi980093l Lakowicz, 2006 Somogyi, 1984, Forster-type energy transfer as a probe for changes in local fluctuations of the protein matrix, Biochemistry, 23, 3403, 10.1021/bi00310a004 Kinosita, 1977, A theory of fluorescence polarization decay in membranes, Biophys. J., 20, 289, 10.1016/S0006-3495(77)85550-1 Nyitrai, 1997, Spectroscopic study of conformational changes in subdomain 1 of G-actin: influence of divalent cations, Biophys. J., 73, 2023, 10.1016/S0006-3495(97)78232-8 Crosbie, 1994, Structural connectivity in actin: effect of C-terminal modifications on the properties of actin, Biophys. J., 67, 1957, 10.1016/S0006-3495(94)80678-2 Moraczewska, 1996, Structural changes in subdomain 2 of G-actin observed by fluorescence spectroscopy, Biochem. J., 317, 605, 10.1042/bj3170605 Vartiainen, 2002, The three mouse actin-depolymerizing factor/cofilins evolved to fulfill cell-type-specific requirements for actin dynamics, Mol. Biol. Cell, 13, 183, 10.1091/mbc.01-07-0331 Yeoh, 2002, Determining the differences in actin binding by human ADF and cofilin, J. Mol. Biol., 315, 911, 10.1006/jmbi.2001.5280 Eads, 1998, Structure determination and characterization of Saccharomyces cerevisiae profilin, Biochemistry, 37, 11171, 10.1021/bi9720033 dos Remedios, 1995, Fluorescence resonance energy transfer spectroscopy is a reliable “ruler” for measuring structural changes in proteins. Dispelling the problem of the unknown orientation factor, J. Struct. Biol., 115, 175, 10.1006/jsbi.1995.1042 Kinosita, 1982, On the wobbling-in-cone analysis of fluorescence anisotropy decay, Biophys. J., 37, 461, 10.1016/S0006-3495(82)84692-4 Bertazzon, 1990, Enthalpic and entropic contributions to actin stability: calorimetry, circular dichroism, and fluorescence study and effects of calcium, Biochemistry, 29, 291, 10.1021/bi00453a040 Bobkov, 2006, Cooperative effects of cofilin (ADF) on actin structure suggest allosteric mechanism of cofilin function, J. Mol. Biol., 356, 325, 10.1016/j.jmb.2005.11.072 Dedova, 2004, Two opposite effects of cofilin on the thermal unfolding of F-actin: a differential scanning calorimetric study, Biophys. Chem., 110, 119, 10.1016/j.bpc.2004.01.009 Perieteanu, 2008, The real-time monitoring of the thermal unfolding of tetramethylrhodamine-labeled actin, Biochemistry, 47, 9688, 10.1021/bi800421u Schuler, 2000, Thermal unfolding of G-actin monitored with the DNase I-inhibition assay stabilities of actin isoforms, Eur. J. Biochem., 267, 476, 10.1046/j.1432-1327.2000.01023.x Levitsky, 2008, Thermal unfolding and aggregation of actin, FEBS J., 275, 4280, 10.1111/j.1742-4658.2008.06569.x