The diversity of small eukaryotic phytoplankton (≤3 μm) in marine ecosystems
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Andersen RA (2007) Provasoli-Guillard National Center for Culture of Marine Phytoplankton web site (http://ccmp.bigelow.org/).
Andersen RA Kawachi M (2005) Traditional Microalgae isolation techniques. Algal Culturing Techniques ( Andersen RA , ed), pp. 83–100. Elsevier/Academic Press, Amsterdam.
Andreoli C Rascio N Casador G (1978) Chlorella nana sp. nov. (Chlorophyceae): a new marine Chlorella. Bot Mar 21: 253–256.
Armbrust EV Berges JA Bowler C et al. (2004) The genome of the diatom Thalassiosira pseudonana : ecology, evolution, and metabolism. Science 306: 79–86.
Béjà O Aravind L Koonin EV et al. (2000) Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science 289: 1902–1906.
Berney C Fahrni J Pawlowski J (2004) How many novel eukaryotic ‘kingdoms’?: pitfalls and limitations of environmental DNA surveys. BMC Biol 2: 13.
Caron DA (1983) Technique for enumeration of heterotrophic and phototrophic nanoplankton, using epifluorescence microscopy, and comparison with other procedures. Appl Environ Microbiol 46: 491–498.
Deane JA Strachan IM Saunders GW Hill DRA McFadden GI (2002) Cryptomonad evolution: nuclear 18S rDNA phylogeny versus cell morphology and pigmentation. J Phycol 38: 1236–1244.
De Cambiaire JC Otis C Turmel M Lemieux C (2007) The chloroplast genome sequence of the green alga Leptosira terrestris : multiple losses of the inverted repeat and extensive genome rearrangements within the Trebouxiophyceae. BMC Genom 8: 213.
DeLong EF Wickhan GS Pace NR (1989) Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells. Science 243: 1360–1363.
Eikrem W Edvardsen B Throndsen J (2008) Renaming Verrucophora farcimen Eikrem, Edvardsen et Throndsen. Phycol Res, in press.
Estep KW Davis PG Hargraves PE Sieburth JM (1984) Chloroplast containing microflagellates in natural populations of North Atlantic nanoplankton: their identification and distribution; including a description of five new species of Chrysochromulina. Protistologica 20: 613–634.
Fawley MW Qin MB Yun Y (1999) The relationship between Pseudoscourfieldia marina and Pycnococcus provasolii (Prasinophyceae, Chlorophyta): evidence from 18S rDNA sequence data. J Phycol 35: 838–843.
Gaarder T (1932) Untersuchungen über Produktions und Lebensbedingungen in norwegishen Austern-Pollen. Bergen Museums Årbok, Naturvidenskapelig Rekke 3: 1–64.
Gilson PR Su V Slamovits CH Reith ME Keeling PJ McFadden GI (2006) Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus. Proc Natl Acad Sci USA 103: 9566–9571.
Guillou L Chrétiennot-Dinet M-J Medlin LK Claustre H Loiseaux-de Goër S Vaulot D (1999a) Bolidomonas: a new genus with two species belonging to a new algal class, the Bolidophyceae (Heterokonta). J Phycol 35: 368–381.
Guillou L Moon-van der Staay SY Claustre H Partensky F Vaulot D (1999b) Diversity and abundance of Bolidophyceae (Heterokonta) in two oceanic regions. Appl Environ Microbiol 65: 4528–4536.
Hallegraeff GM (1983) Scale-bearing and loricate nanoplankton from the East Autralian Current. Bot Mar 26: 493–515.
Herbland A Voituriez B (1979) Hydrological structure analysis for estimating the primary production in the tropical Atlantic Ocean. J Mar Res 37: 87–101.
Hobbie JE Daley RJ Jasper S (1977) Use of Nuclepore filters for counting bacteria by fluorescence microscopy. Appl Environ Microbiol 33: 1225–1228.
Johnson PW Sieburth JM (1979) Chroococcoid cyanobacteria in the sea: a ubiquitous and diverse phototrophic biomass. Limnol Oceanogr 24: 928–935.
Kang S-H Fryxell G (1992) Fragilariopsis cylindrus (Grunow) Krieger: the most abundant diatom in water column assemblages of Antarctic marginal ice-edge zones. Polar Biol 12: 609–627.
Knight-Jones EW (1951) Preliminary studies of nanoplankton and ultraplankton systematics and abundance by a quantitative culture method. Extrait J Conseil Int Exploration 17: 139–155.
Larsen J Sournia A (1991) The diversity of heterotrophic dinoflagellates. The Biology of Free-Living Heterotrophic Protists, Vol. 45 ( Patterson DJ Larsen J , eds), pp. 313–332. Clarendon Press, Oxford.
Lewin J Norris RE Jeffrey SW Pearson BE (1977) An aberrant chrysophycean alga Pelagococcus subviridis gen. nov. et sp. nov. from the north Pacific Ocean. J Phycol 13: 259–266.
Li WKW (1990) Particles in “particle-free” seawater: growth of ultraphytoplankton and implications for dilution experiments. Can J Fish Aquat Sci 47: 1258–1268.
Li WKW (1994) Primary productivity of prochlorophytes, cyanobacteria, and eucaryotic ultraphytoplankton: measurements from flow cytometric sorting. Limnol Oceanogr 39: 169–175.
Lobanov AV Fomenko DE Zhang Y Sengupta A Hatfield DL Gladyshev VN (2007) Evolutionary dynamics of eukaryotic selenoproteomes: large selenoproteomes may associate with aquatic life and small with terrestrial life. Genome Biol 8: R198.
Lohmann H (1908) Üntersuchungen zur Feststellung des vollstandigen Gehaltes des Meeres an Plankton. Wiss Meeresunters Abt Kiel 10: 129–370.
Ludwig W Strunk O Westram R et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363–1371.
Mackey MD Mackey DJ Higgins HW Wright SW (1996) CHEMTAX – a program for estimating class abundances from chemical markers: application to HPLC measurements of phytoplankton. Mar Ecol Prog Ser 144: 265–283.
Manton I (1975) Observations on Scourfieldia marina Throndsen and Scourfieldia caeca Belcher et Swale. Arch Protistenk 117: 358–368.
Marie D Brussaard CPD Partensky F Vaulot D (1999) Flow cytometric analysis of phytoplankton, bacteria and viruses. Current Protocols in Cytometry, Vol. 11.11 ( Robinson JP , ed), pp. 1–15. John Wiley & Sons, New York.
Not F Valentin K Romari K et al. (2007b) Picobiliphytes, a new marine picoplanktonic algal group with unknown affinities to other eukaryotes. Science 315: 252–254.
Novarino G Oliva E Perez Uz B (2002) Nanoplankton protists from the western Mediterranean Sea. I. Occurrence, ultrastructure, taxonomy and ecological role of the mixotrophic flagellate Ollicola vangoorii (Chrysomonadidae=Chrysophyceae p.p.). Sci Mar 66: 233–247.
Okamoto N Inouye I (2005) The katablepharids are a distant sister group of the Cryptophyta: a proposal for Katablepharidophyta divisio nova/Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny. Protist 156: 163–179.
Oudot-Le Secq MP Grimwood J Shapiro H Armbrust EV Bowler C Green BR (2007) Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana : comparison with other plastid genomes of the red lineage. Mol Genet Genom 277: 427–439.
Pruesse E Quast C Knittel K Fuchs BM Ludwig W Peplies J Glockner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188–7196.
Robbens S Derelle E Ferraz C Wuyts J Moreau H Van de Peer Y (2007) The complete chloroplast and mitochondrial DNA sequence of Ostreococcus tauri : organelle genomes of the smallest eukaryote are examples of compaction. Mol Biol Evol 24: 956–968.
Ruinen J (1938) Notizen über Salzflagellaten. Arch Protistenk 90: 210–258.
Schoemann W Becquevort S Stefels J Rousseau W Lancelot C (2005) Phaeocystis blooms in the global ocean and their controlling mechanisms: a review. J Sea Res 53: 43–66.
Sieburth JM Smetacek V Lenz J (1978) Pelagic ecosystem structure: heterotrophic compartments of the plankton and their relationship to plankton size fractions. Limnol Oceanogr 23: 1256–1263.
Sieracki M Poulton N Crosbie N (2005) Automated isolation techniques for microalgae. Algal Culturing Techniques ( Andersen RA , ed), pp. 101–116. Academic Press, Amsterdam.
Simon N Lebot N Marie D Partensky F Vaulot D (1995) Fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes to identify small phytoplankton by flow cytometry. Appl Environ Microbiol 61: 2506–2513.
Tamura K Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10: 512–526.
Thomsen HA (1986) A survey of the smallest eucaryotic organisms of the marine phytoplankton. Canad Bull Fish Aquat Sci 214: 121–158.
Thomsen HA Buck KR (1998) Nanoflagellates of the central California waters: taxonomy, biogeography and abundance of primitive, green flagellates (Pedinophyceae, Prasinophyceae). Deep-Sea Res II 45: 1687–1707.
Thomsen HA Buck KR Chavez FP (1994) Haptophytes as component of marine phytoplankton. The Haptophyte Algae ( Green JC Leadbeater BSC , eds), pp. 187–208. Oxford Science Publications, Oxford.
Throndsen J (1969) Flagellates of Norwegian coastal waters. Nytt Magasin for Botanikk 16: 161–216.
Throndsen J (1973) Phytoplankton occurence and distribution in stations sampled during the SCOR WG 15 to the Carribbean Sea, Pacific Ocean and Sargasso Sea in May 1970, based on direct cell counts, Vol. 21 ( Tyler JE , ed), pp. D1–D28. SCRIPPS Institution of Oceanography, University of California, La Jolla, CA.
Throndsen J (1978) The dilution culture method. Phytoplankton Manual, Vol. 6 ( Sournia A , ed), pp. 218–224. UNESCO, Paris.
Throndsen J (1983) Ultra- and nannoplankton flagellates from Coastal waters of Southern Honshu and Kyushu, Japan (including some results from the western part of the Kuroshio off Honshu). Working Party on Taxonomy in the Akashiwo Mondai Kenkyukai Fishing Ground Preservation Division, Research Department, Fisheries Agency, Japan ( Chihara M Haruhiko I , eds), pp. 62. Gakujutsu Thosho Printing Co. Ltd, Tokyo, Japan.
Throndsen J Kristiansen S (1982) Nanoplankton communities in Haltenbanken waters (Norwegian Sea) during an oil spill experiment, July–August 1. Sarsia 73: 71–74.
Vaulot D Le Gall F Marie D Guillou L Partensky F (2004) The Roscoff Culture Collection (RCC): a collection dedicated to marine picoplankton. Nova Hedwigia 79: 49–70.
Veldhuis MJW Kraay GW Timmermans KR (2001) Cell death in phytoplankton: correlation between changes in membrane permeability, photosynthetic activity, pigmentation and growth. Eur J Phycol 36: 167–177.
Viprey M Guillou L Férréol M Vaulot D (2008) Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biaised PCR approach. Environ Microbiol, in press.
Von Wintzingerode F Göbel UB Stackebrandt E (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21: 213–229.
Wislough S (1924) Pryczynek do biologji i genezy szlanow leczniczych na Krymie. Acta Soc Bot Pol 2: 99–129.
Worden AZ Nolan JK Palenik B (2004) Assessing the dynamics and ecology of marine picophytoplankton: the importance of the eukaryotic component. Limnol Oceanogr 49: 168–179.