The diversity of endophytic fungi in the above-ground tissue of two Lycopodium species in Poland

Abarenkov K, Nilsson RH, Larsson KH, Alexander IJ, Eberhardt U, Erland S, Høiland K, Kjøller R, Larsson E, Pennanen T, Sen R, Taylor AFS, Tedersoo L, Ursing BM, Vrålstad T, Liimatainen K, Peintner U, Kõljalg U (2010) The UNITE database for molecular identification of fungi—recent updates and future perspectives. New Phytol 186:281–285 Abreu LM, Almeida AR, Salgado M, Pfenning LH (2010) Fungal endophytes associated with the mistletoe Phoradendron perrottettii and its host tree Tapirira guianensis. Mycol Prog 9:559–566 Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 Aptroot A (1998) A world revision of Massarina (Ascomycota). Nova Hedwigia 66:89–162 Arnold AE (2007) Understanding the diversity of foliar fungal endophytes: progress, challenges, and frontiers. Fungal Biol Rev 21:51–66 Arnold AE, Maynard Z, Gilbert GS (2001) Fungal endophytes in dicotyledonous neotropical trees: patterns of abundance and diversity. Mycol Res 105:1502–1507 Arnold AE, Maynard Z, Gilbert GS, Coley PD, Kursar TA (2000) Are tropical fungal endophytes hyperdiverse? Ecol Lett 3:267–274 Arnold AE, Lutzoni F (2007) Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecology 88:541–549 Berch SM, Kendrick B (1982) Vesicular-arbuscular mycorrhizae of Southern Ontario ferns and fern-allies. Mycologia 74:769–776 Bruchmann H (1908) Das Prothallium von Lycopodium complanatum L. Bot Zeit 66:169–181 Budziszewska J, Szypuła W (2010) Influence of site conditions on the diversity of endophytic fungi of clubmoss species Huperzia selago (L.) Bernh. ex Schrank et Mart. Pol J Ecol 58:627–634 Budziszewska J, Szypuła W, Wilk M, Wrzosek M (2011) Paraconiothyrium babiogorense sp. nov., a new endophyte from fir club moss Huperzia selago (Huperziaceae). Mycotaxon 115:457–468 Carroll GC (1988) Fungal endophytes in stems and leaves: from latent pathogen to mutualistic symbiont. Ecology 46:692–699 Chaverri P, Gazis RO (2011) Linking ex planta fungi with their endophytic stages: Perisporiopsis, a common leaf litter and soil fungus, is a frequent endophyte of Hevea spp. and other plants. Fung Ecol 4:94–102 Chen XY, Qi YD, Wei JH, Zhang Z, Wang DL, Feng JD, Gan BC (2011) Molecular identification of endophytic fungi from medicinal plant Huperzia serrata based on rDNA ITS analysis. World J Microbiol Biotechnol 27:495–503 Colwell RK (2006) EstimateS: Statistical estimation of species richness and shared species from samples. Version 8. User’s Guide and application published at: http://purl.oclc.org/estimates. Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, USA Crous PW, Wingfield MJ, Guarro J, Cheewangkoon R, van der Bank M, Swart WJ, Stchigel AM, Cano-Lira JF, Roux J, Madrid H, Damm U, Wood AR, Shuttleworth LA, Hodges CS, Munster M, de Jesús Yáñez-Morales M, Zúñiga-Estrada L, Cruywagen EM, de Hoog GS, Silvera C, Najafzadeh J, Davison EM, Davison PJN, Barrett MD, Barrett RL, Manamgoda DS, Minnis AM, Kleczewski NM, Flory SL, Castlebury LA, Clay K, Hyde KD, Maússe-Sitoe SND, Chen S, Lechat C, Hairaud M, Lesage-Meessen L, Pawlowska J, Wilk M, Sliwinska-Wyrzychowska A, Metrak M, Wrzosek M, Pavlic-Zupanc D, Maleme HM, Slippers B, Mac Cormack WP, Archuby DI, Grünwald NJ, Tellería MT, Dueñas M, Martín MP, Marincowitz S, de Beer ZW, Perez CA, Gené J, Marin-Felix Y, Groenewald JZ (2013) Fungal planet description sheets: 154–213. Persoonia 31:188–296 Delaye L, Garcia-Guzman G, Heil M (2013) Endophytes versus biotrophic and necrotrophic pathogens—are fungal lifestyles evolutionarily stable traits? Fungal Divers 60:125–135 Damm U, Verkley GJM, Crous PW, Fourie PH, Haegi A, Riccioni L (2008) Novel Paraconiothyrium species on stone fruit trees and other woody hosts. Persoonia 20:9–17 Davis EC, Franklin JB, Shaw AJ, Vilgalys R (2003) Endophytic Xylaria (Xylariaceae) among liverworts and angiosperms: phylogenetics, distribution, and symbiosis. Am J Bot 90:1661–1667 Davis EC, Shaw AJ (2008) Biogeographic and phylogenetic patterns in diversity of liverwort-associated endophytes. Am J Bot 95:914–924 Domsch KH, Gams W, Anderson TH (1993) Compendium of soil fungi. Vol. I & II; IHW—Verlag. Eching, Germany, p 859 and p. 405 Ek-Ramos MJ, Zhou W, Valencia CU, Antwi JB, Kalns LL, Morgan GD, Kerns DL, Sword GA (2013) Spatial and temporal variation in fungal endophyte communities isolated from cultivated cotton (Gossypium hirsutum). PLoS One 8:e66049 Engelhardt K (1987) Perfekte Ascomyceten an zwei Bärlapparten des Lichtenfelser Forstes. In: Band A (ed) Pilzflora Nordwestoberfrankens. Weidhausen bei Coburg 11, pp 33–38 Farr DF, Rossman AY (2012) Fungal Databases, Systematic Mycology and Microbiology Laboratory, ARS, USDA. http://nt.ars-grin.gov/fungaldatabases/; Accessed 4 Sept 2013 Fisher RA, Corbet AS, Williams CB (1943) The relation between the number of species and the number of individuals in a random sample of an animal population. J Anim Ecol 12:42–58 Freeberg JA (1962) Lycopodium prothalli and their endophytic fungi as studied in vitro. Am J Bot 49:530–535 Hagen A (1950) Notes on Arctic fungi. II. Fungi collected by Dr P. F. Scholander on the Swedisch-Norwegian Arctic expedition 1931. Nor Polarinst Skr 93:12–25 Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95–98 Hammer Ř, Harper DAT, Ryan PD (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron 4:1–9 Hata K, Futai K (1995) Endophytic fungi associated with healthy pine needles and needles infested by the pine needle gall midge, Thecodiplosis japonensis. Can J Bot 73:384–390 Higgins LK, Arnold AE, Miadlikowska J, Sarvate SD, Lutzoni F (2007) Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages. Mol Phylogenet Evol 42:543–555 Higgins HL, Coley PD, Kursar TA, Arnold AE (2011) Culturing and direct PCR suggest prevalent host generalism among diverse fungal endophytes of tropical forest grasses. Mycologia 103:247–260 Holm K, Holm L (1984) A contribution to the mycoflora of Iceland. Acta Bot Isl 7:3–11 Holm L, Holm K (1981) Ascomycetes on Nordic Lycopods. Karstenia 21:57–72 Jaccard P (1912) The distribution of the flora in the alpine zone. New Phytol 11:37–50 Jaklitsch WM, Samuels GJ, Dodd SL, Lu B-S, Druzhinina IS (2006) Hypocrea rufa/Trichoderma viride: a reassessment, and description of five closely related species with and without warted conidia. Stud Mycol 55:135–177 Jaklitsch WM, Voglmayr H (2012) Phylogenetic relationships of five genera of Xylariales and Rosasphaeria gen. nov. (Hypocreales). Fungal Divers 52:75–98 Joshee S, Paulus BC, Park D, Johnston PR (2009) Diversity and distribution of fungal foliar endophytes in New Zealand Podocarpaceae. Mycol Res 113:1003–1015 Kessler M, Jonas R, Cicuzza D, Kluge J, Piątek K, Naks P, Lehnert M (2010a) A survey of the mycorrhization of Southeast Asian ferns and lycophytes. Plant Biol 12:788–793 Kessler M, Jonas R, Strasberg D, Lehnert M (2010b) Mycorrhizal colonizations of ferns and lycophytes on the island of La Reunion in relation to nutrient availability. Basic Appl Ecol 11:329–336 Kõjalg U, Larsson K-H, Abarenkov K, Nilsson RH, Alexander IJ, Eberhardt U, Erland S, Høiland K, Kjøller R, Larsson E, Pennanen T, Sen R, Taylor AFS, Tedersoo L, Vrålstad T, Ursing BM (2005) UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. New Phytol 166:1063–1068 Kõljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Taylor AFS, Bahram M, Bates ST, Bruns TD, Bengtsson-Palme J, Callaghan TM, Douglas B, Drenkhan T, Eberhardt U, Dueñas M, Grebenc T, Griffith GW, Hartmann M, Kirk PM, Kohout P, Larsson E, Lindahl BD, Lücking R, Martín MP, Matheny PB, Nguyen NH, Niskanen T, Oja J, Peay KG, Peintner U, Peterson M, Põldmaa K, Saag L, Saar I, Schüßler A, Scott JA, Senés C, Smith ME, Suija A, Taylor DL, Telleria MT, Weiß M, Larsson K-H (2013) Towards a unified paradigm for sequence-based identification of fungi. Mol Ecol 22:5271–5277 Kruskal W, Wallis WA (1952) Use of ranks in one-criterion variance analysis. J Am Stat Assoc 47:583–621 Leake JR, Cameron DD, Beerling DJ (2008) Fungal fidelity in the mycoheterotroph-to-autotroph life cycle of Lycopodiaceae: a case of parental nurture? New Phytol 177:572–576 Lee J-K, Eom A-H, Lee S-S, Lee CH (2001) Mycorrhizal symbioses found in roots of fern and its relatives in Korea. J Plant Biol 44:81–86 Leuchtmann A (1984) Über Phaeosphaeria Miyake und andere bitunicate Ascomyceten mit mehrfach querseptierten Ascosporen. Sydowia 37:75–194 Moricca S, Ginetti B, Ragazzi A (2012) Species- and organ-specificity in endophytes colonizing healthy and declining Mediterranean oaks. Phytopatologia Mediterr 51:587–598 Muthukumar T, Prabha K (2013) Arbuscular mycorrhizal and septate endophyte fungal associations in lycophytes and ferns of south India. Symbiosis 59:15–33 Pielou EC (1966) The measurement of diversity in different types of biological collections. J Theor Biol 13:131–144 Rajala T, Velmala SM, Tuomivirta T, Haapanen M, Müller M, Pennanen T (2013) Endophyte communities vary in the needles of Norway spruce clones. Fungal Biol 117:182–190 Ranker TA, Haufler CH (2008) Biology and evolution of Ferns and Lycophytes. Cambridge University Press, Cambridge Read DJ, Duckett JG, Francis R, Ligrone R, Russell A (2000) Symbiotic fungal associations in ‘lower’ plants. Phil Trans R Soc Lond B 355:815–831 Remy W, Taylor TN, Hass H, Kerp H (1994) Four hundred-million-year-old vesicular arbuscular mycorrhizae. Proc Natl Acad Sci U S A 91:11841–11843 Rodriguez RJ, Redman RS (1997) Fungal life-styles and ecosystem dynamics: biological aspects of plant pathogens, plant endophytes and saprophytes. Adv Bot Res 24:170–193 Rodriguez RJ, White JF Jr, Arnold AE, Redman RS (2009) Fungal endophytes: diversity and functional roles. New Phytol 182:314–330 Saccardo PA (1889) Mycetes Sibirici. Bull Soc R Bot Belg 28:77–120 Saikkonen K, Faeth SH, Helander M, Sullivan TJ (1998) Fungal endophytes: a continuum of interactions with host plants. Annu Rev Ecol Syst 29:319–343 Samson RA, Hoekstra ES, Frisvad JC (2004) Introduction to food- and airborne fungi (7th Ed.). Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands. 389 p Schmid E, Oberwinkler F (1993) Mycorrhiza-like interaction between the achlorophyllous gametophyte of Lycopodium clavatum L. and its fungal endophyte studied by light and electron microscopy. New Phytol 124:69–81 Shannon CE (1948) A mathematical theory of communication. Bell Syst Tech J 27:379–423 Stone JK, Polishook JD, White JRJ (2004) Endophytic fungi. In: Mueller G, Bills GF, Foster MS (eds) Biodiversity of fungi: Inventory and monitoring methods. Elsevier, Burlington, pp 241–270 Schulz B, Boyle C (2005) The endophytic continuum. Mycol Res 109:661–686 Sun X, Ding Q, Hyde KD, Guo LD (2012) Community structure and preference of endophytic fungi of three woody plants in a mixed forest. Fungal Ecol 5:624–632 Taylor TN, Hass H, Kerp H (1999) The oldest fossil ascomycetes. Nature 399:648 Taylor TN, Hass H, Kerp H, Krings M, Hanlin RT (2004) Perithecial ascomycetes from the 400 MaBP Rhynie Chert: an example of ancestral polymorphism. Mycologia 96:1427–1443 U’Ren JM, Lutzoni F, Miadlikowska J, Laetsch AD, Arnold AE (2012) Host- and geographic structure of endophytic and endolichenic fungal communities at a continental scale. Am J Bot 99:898–914 Wang B, Qiu Y-L (2006) Phylogenetic distribution and evolution of mycorrhizas in land plants. Mycorrhiza 16:299–363 Wang Y, Zeng QG, Zhang ZB, Yan RM, Wang LY, Zhu D (2011) Isolation and characterization of endophytic huperzine A-producing fungi from Huperzia serrata. J Ind Microbiol Biotechnol 38:1267–1278 Watanabe T (2002) Pictorial atlas of soil and seed fungi: morphologies of cultured fungi and key to species. CRC Press, Boca Raton, p 489 Wearn JA, Sutton BC, Morley NJ, Gange AC (2012) Species and organ specificity of fungal endophytes in herbaceous grassland plants. J Ecol 100:1085–1092 White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfland DH, Sninsky JJ, White TJ (eds) PCR protocols: A guide to methods and applications. Academic, New York Whittier DP (1977) Gametophytes of Lycopodium obscurum grown in axenic culture. Can J Bot 55:563–567 Wilson D (1995) Endophytes—the evolution of the term, a clarification of its use and definition. Oikos 73:274–276 Xiang JG, Shan WG, Liang DE, Ying YM, Gan LS, Wang JW, Zhan ZJ (2013) N-gearing Furanone derivatives from an endophytic fungus in Huperzia serrata. Helv Chim Acta 96:997–1003 Zhang ZB, Zeng QG, Yan RM, Wang Y, Zou ZR, Zhu D (2011) Endophytic fungus Cladosporium cladosporioides LF70 from Huperzia serrata produces Huperzine A. World J Microbiol Biotechnol 27:479–486 Zhou D, Hyde KD (2001) Host-specificity, host-exclusivity and host-recurrence in saprobic fungi. Mycol Res 105:1449–1457 Zhu D, Wang J, Zeng Q, Zhang Z, Yan R (2010) A novel endophytic Huperzine A–producing fungus, Shiraia sp. Slf14, isolated from Huperzia serrata. J Appl Microbiol 109:1469–1478