The discrete Laplace exponential family and estimation of Y-STR haplotype frequencies
Tài liệu tham khảo
Andersen, M.M., 2010. Y-STR: Haplotype Frequency Estimation and Evidence Calculation. Master's Thesis. Aalborg University, Denmark.
Andersen, 2013, Estimating trace-suspect match probabilities for singleton Y-STR haplotypes using coalescent theory, Forensic Sci. Int., 7, 264, 10.1016/j.fsigen.2012.11.004
Andersen, M.M., Eriksen, P.S., 2012a. Efficient forward simulation of Fisher–Wright populations with stochastic population size and neutral single step mutations in haplotypes. Preprint. ArXiv:1210.1773.
Andersen, M.M., Eriksen, P.S., 2012b. FWSIM: Fisher–Wright population simulation. R package version 0.2-5.
Andersen, M.M., Eriksen, P.S., 2013a. disclap: Discrete Laplace Family. R package version 1.2.
Andersen, M.M., Eriksen, P.S., 2013b. disclapmix: discrete Laplace mixture inference using the EM algorithm. R package version 0.3.
Andersen, 2013, A gentle introduction to the discrete Laplace method for estimating Y-STR haplotype frequencies, Preprint. arXiv:1304.2129
Azzalini, 1996
Ballantyne, 2010, Mutability of Y-chromosomal microsatellites, Am. J. Hum. Genet., 87, 341, 10.1016/j.ajhg.2010.08.006
Brenner, 2010, Fundamental problem of forensic mathematics – the evidential value of a rare haplotype, Forensic Sci. Int. Genet., 4, 281, 10.1016/j.fsigen.2009.10.013
Brigham, 1988
Buckleton, 2011, The interpretation of lineage markers in forensic DNA testing, Forensic Sci. Int., 5, 78, 10.1016/j.fsigen.2011.01.010
Budowle, 2008, Null allele sequence structure at the DYS448 locus and implications for profile interpretation, Int. J. Legal Med., 122, 421, 10.1007/s00414-008-0258-y
Butler, 2005
Caliebe, 2010, A Markov chain description of the stepwise mutation model, J. Theoretical Biol., 266, 336, 10.1016/j.jtbi.2010.06.033
Cooley, 1969, The finite Fourier transform, IEEE Trans. Audio Electroacoust., 17, 77, 10.1109/TAU.1969.1162036
Dempster, 1977, Maximum likelihood from incomplete data via the EM algorithm, J. R. Stat. Soc., 39, 1
Evett, 1998
Ewens, 2004
Fisher, 1922, On the dominance ratio, Proc. R. Soc. Edin., 42, 321, 10.1017/S0370164600023993
Fisher, 1930
Fisher, 1958
Gill, 2001, DNA commission of the international society of forensic genetics, Forensic Sci. Int., 124, 5, 10.1016/S0379-0738(01)00498-4
Gill, 1985, Forensic application of DNA fingerprints, Nature, 318, 577, 10.1038/318577a0
Grün, 2008, FlexMix version 2, J. Stat. Software, 28
Hein, 2005
Inusah, 2006, A discrete analogue of the Laplace distribution, J. Stat. Plann. Inference, 136, 1090, 10.1016/j.jspi.2004.08.014
Kaufman, 1990
Krawczak, 2001, Forensic evaluation of Y-STR haplotype matches, Forensic Sci. Int., 118, 114, 10.1016/S0379-0738(00)00479-5
Kullback, 1959
Kullback, 1951, On information and sufficiency, Ann. Math. Stat., 22, 79, 10.1214/aoms/1177729694
Leisch, 2004, FlexMix, J. Stat. Software, 11
Maechler, M., Rousseeuw, P., Struyf, A., Hubert, M., 2005. Cluster analysis basics and extensions. Rousseeuw et al. provided the S original which has been ported to R by Kurt Hornik and has since been enhanced by Martin Maechler: speed improvements, silhouette() functionality, bug fixes, etc. See the ‘Changelog’ file (in the package source).
Ohta, 1973, A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population, Genet. Res., 22, 201, 10.1017/S0016672300012994
R Development Core Team, 2010. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
Robbins, 1968, Estimating the total probability of the unobserved outcomes of an experiment, Ann. Math. Stat., 39, 256, 10.1214/aoms/1177698526
Roewer, 2009, Y chromosome STR typing in crime casework, Forensic Sci. Med. Pathol., 5, 77, 10.1007/s12024-009-9089-5
Roewer, 2000, A new method for the evaluation of matches in non-recombining genomes, Forensic Sci. Int., 114, 31, 10.1016/S0379-0738(00)00287-5
Roewer, 2001, Online reference database of European Y-chromosomal short tandem repeat STR haplotypes, Forensic Sci. Int., 2–3, 106, 10.1016/S0379-0738(00)00478-3
Schwarz, 1978, Estimating the dimension of a model, Ann. Stat., 6, 461, 10.1214/aos/1176344136
Sibille, 2002, Y-STR DNA amplification as biological evidence in sexually assaulted female victims with no cytological detection of spermatozoa, Forensic Sci. Int., 125, 212, 10.1016/S0379-0738(01)00650-8
Titterington, 1987
Wedel, 1995, A mixture likelihood approach for generalized linear models, J. Classification, 12, 21, 10.1007/BF01202266
Willuweit, 2011, Y-STR frequency surveying method, Forensic Sci. Int., 5, 84, 10.1016/j.fsigen.2010.10.014
Willuweit, 2009, Y chromosome haplotype reference database (YHRD), Forensic Sci. Int., 1, 83, 10.1016/j.fsigen.2007.01.017
Wright, 1931, Evolution in mendelian populations, Genetics, 16, 97, 10.1093/genetics/16.2.97
