The complex extracellular biology ofStreptomyces

Oxford University Press (OUP) - Tập 34 Số 2 - Trang 171-198 - 2010
Keith Chater1, Sándor Bíró2, Kye Joon Lee3, Tracy Palmer4, Hildgund Schrempf5
1John Innes Centre. Norwich Research Park, Colney, Norwich, UK
2Department of Human Genetics, Medical and Health Science Center, University of Debrecen, Debrecen, Hungary
3School of Biological Sciences, College of Natural Sciences, Seoul National University, Seoul, Korea
4Division of Molecular Microbiology, College of Life Sciences, University of Dundee, Dundee
5FB Biology/Chemistry Applied Genetics of Microorganisms University of Osnabrück, Osnabrück, Germany

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10.1111/j.1365-2958.2006.05409.x

10.1146/annurev.mi.46.100192.002333

10.1111/j.1365-2958.2009.06814.x

10.1271/bbb.60649

Aoyagi, 1989, Protease inhibitors and biological control, Bioactive Metabolites from Microorganisms. Progress in Industrial Microbiology, 27, 403

10.1038/nbt1265

10.1099/mic.0.29161-0

10.1016/j.jmb.2004.05.028

10.1186/1471-2105-6-167

10.1038/417141a

10.1038/ja.2005.1

10.1046/j.1365-2958.1996.00114.x

10.1046/j.1365-2958.2000.01719.x

10.1016/j.mib.2005.02.016

Birkó, 1999, Characterization of the gene for factor C, an extracellular signal protein involved in morphological differentiation of Streptomyces griseus, Microbiology, 145, 2245, 10.1099/00221287-145-9-2245

10.1074/mcp.M600367-MCP200

10.1074/mcp.M900194-MCP200

Biró, 1980, A substance effecting differentiation in Streptomyces griseus. Purification and properties, Eur J Biochem, 103, 359, 10.1111/j.1432-1033.1980.tb04322.x

10.1093/jxb/ern344

Blaak, 1995, Binding and substrate specificities of a Streptomyces olivaceoviridis chitinase in comparison with its proteolytically processed form, Eur J Biochem, 229, 132, 10.1111/j.1432-1033.1995.tb20447.x

Blaak, 1993, Characteristics of an exochitinase from Streptomyces olivaceoviridis, its corresponding gene, putative protein domains and relationship to other chitinases, Eur J Biochem, 214, 659, 10.1111/j.1432-1033.1993.tb17966.x

Blanco, 1998, Biochemical characterization of the SecA protein of Streptomyces lividans– interaction with nucleotides, binding to membrane vesicles and in vitro translocation of proAmy protein, Eur J Biochem, 257, 472, 10.1046/j.1432-1327.1998.2570472.x

Bloomfield, 1967, Melanins and resistance of fungi to lysis, J Bacteriol, 93, 1276, 10.1128/JB.93.4.1276-1280.1967

Böckle, 1997, Reduction of disulfide bonds by Streptomyces pactum during growth on chicken feathers, Appl Environ Microb, 63, 790, 10.1128/AEM.63.2.790-792.1997

10.1073/pnas.0405620102

10.1007/BF00329843

10.1016/0092-8674(88)90472-2

Cantarel, 2009, The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics, Nucleic Acids Res, 37, D0233, 10.1093/nar/gkn663

10.1111/j.1365-2958.2007.05674.x

Castillo, 2002, Munumbicins, wide spectrum antibiotics produced by Streptomyces NRRL 30562, endophytic on Kennedia nigriscans, Microbiology, 148, 2675, 10.1099/00221287-148-9-2675

10.1099/mic.0.2008/018523-0

10.1073/pnas.1934677100

10.1007/s10482-008-9231-5

Chater KF Bibb MJ (1997) Regulation of bacterial antibiotic production. Biotechnology ( Rehm HJ Reed G Puhler A Stadler P , eds), pp. 57–105. VCH Press, Weinheim.

10.1111/j.1574-6976.2006.00033.x

10.1007/s12275-007-0233-1

Chater KF Hopwood DA (1989) Antibiotic biosynthesis in Streptomyces . Genetics of Bacterial Diversity ( Hopwood DA Chater KF , eds), pp. 129–150. Academic Press, London.

Chater KF Kinashi H (2007) Streptomyces linear plasmids: their discovery, functions, interactions with other replicons, and evolutionary significance. Microbial Monographs Vol 7, Microbial Linear Plasmids ( Meinhardt F Klassen R , eds), pp. 1–31. Springer-Verlag, Berlin.

Chater KF Merrick MJ (1979) Streptomycetes. Developmental Biology of Prokaryotes ( Parish JH , ed), pp. 93–114. Blackwell, Oxford.

Chen, 1992, Copper transfer and activation of the Streptomyces apotyrosinase are mediated through a complex formation between apotyrosinase and its trans-activator MelC1, J Biol Chem, 267, 20100, 10.1016/S0021-9258(19)88671-4

10.1093/molbev/msl108

10.1046/j.1365-2958.2002.02980.x

10.1101/gad.264303

10.1111/j.1365-2958.2004.04143.x

10.1016/j.tim.2006.05.008

10.1073/pnas.0805530105

10.1093/emboj/18.11.2982

10.1146/annurev.mi.43.100189.001231

10.1126/science.1078155

10.1016/j.mib.2006.08.006

10.1111/j.1365-2958.1990.tb00545.x

10.1111/j.1365-2958.2009.06633.x

10.1111/j.1365-2958.2009.06838.x

10.1128/JB.00685-08

10.1126/science.1160619

10.1128/JB.185.4.1478-1483.2003

Doran, 1990, Isolation and characterization of a beta-lactamase-inhibitory protein from Streptomyces clavuligerus and cloning and analysis of the corresponding gene, J Bacteriol, 172, 4909, 10.1128/jb.172.9.4909-4918.1990

10.1146/annurev.biochem.77.061606.160747

Egan, 1998, Transfer of streptomycin biosynthesis gene clusters within streptomycetes isolated from soil, Appl Environ Microb, 64, 5061, 10.1128/AEM.64.12.5061-5063.1998

10.1016/j.mib.2004.10.013

10.1101/gad.264403

10.1016/j.bbapap.2004.02.008

Felsenstein, 1989, PHYLIP – Phylogeny Inference Package (Version 3.2), Cladistics, 5, 164

Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) Version 3.6. Distributed by the Author. Department of Genome Sciences, University of Washington, Seattle.

Fernández, 2002, Nuclease activities and cell death processes associated with the development of surface cultures of Streptomyces antibioticus, Microbiology, 148, 405, 10.1099/00221287-148-2-405

10.1099/mic.0.26113-0

10.1038/nrmicro1968

10.1074/jbc.M101109200

10.1038/23748

10.1128/JB.187.23.8149-8155.2005

10.1111/j.1574-6968.1995.tb07762.x

10.1083/jcb.10.4.505

10.1016/j.asd.2006.08.003

10.1073/pnas.252607699

10.1111/j.1574-6968.2008.01265.x

Gräfe U (1989) Autoregulatory secondary metabolite from actinomycetes. Regulation of Secondary Metabolism in Actinomycetes ( Shapiro S , ed), pp. 75–126. CRC Press, Boca Raton, FL.

10.1099/00221287-131-4-833

10.1073/pnas.0812082106

10.1271/bbb.67.803

10.1016/j.jmb.2004.10.050

10.1007/s10295-003-0067-8

10.1046/j.1365-2958.2002.03219.x

10.1074/jbc.M002623200

10.1128/JB.00662-06

Holzer H (1983) Regulation of proteinase in Saccharomyces cerevisiae . Protease Inhibitors: Medical and Biological Aspects ( Katunuma N Umezawa H Holzer H , eds), pp. 181–190. Japan Scientific Society Press, Tokyo.

Hopwood DA (2007) Streptomyces in Nature and Medicine: The Antibiotic Makers. Oxford University Press, New York.

10.1271/bbb.60627

10.1073/pnas.1635213100

10.1186/1471-2105-8-460

10.1038/nbt820

10.1046/j.1365-2672.1999.00519.x

Jeong, 1993, Submerged spore formation and biosynthesis of extracellular protease in Streptomycesalbidoflavus SMF301, Kor J Microbiol, 31, 566

Joerger, 1990, Cloning expression and nucleotide sequence of the Lactobacillus helveticus 481 gene encoding the bacteriocin helveticin J, J Bacteriol, 172, 6339, 10.1128/jb.172.11.6339-6347.1990

10.1016/j.chembiol.2007.11.014

10.1094/MPMI-20-6-0599

10.1007/s10295-005-0035-6

10.1016/j.cub.2004.12.084

10.1099/00221287-143-8-2709

10.1099/13500872-141-12-3095

Kang, 1995, Characteristics of trypsin-like protease and metalloprotease associated with mycelium differentiation of Streptomyces albidoflavus SMF301, J Microbiol, 33, 307

10.1016/S0168-1656(98)00034-0

10.1074/jbc.M000227200

10.1128/JB.184.21.6016-6025.2002

10.1128/JB.187.1.286-295.2005

10.1271/bbb.69.1624

10.1073/pnas.0607472104

10.1016/0378-1119(84)90060-X

Khokhlov, 1967, Dokl Akad Nauk SSSR, 177, 232

10.1128/JB.187.9.2957-2966.2005

10.1111/j.1365-2958.2008.06471.x

Kim, 2008, Involvement of beta-lactamase inhibitory protein, BLIP-II, in morphological differentiation of Streptomyces exfoliatus SMF19, J Microbiol Biotechn, 18, 1884

Kim, 1990, Characterization of thiol protease inhibitor isolated from Streptomyces sp. KIS13, Kor J Appl Microbiol Biotech, 18, 501

10.1099/13500872-141-4-1017

10.1016/0168-1656(95)00061-T

10.1099/13500872-142-7-1797

Kim, 1991, Protease inhibitor production using Streptomyces sp. SMF13, J Microbiol Biotechn, 1, 288

Kim, 1992, Numerical identification of a Streptomyces strain producing thiol protease inhibitor, J Microbiol Biotechn, 2, 220

Kim, 1993, The structure of protease inhibitors produced by Streptomyces exfoliatus SMF13, Kor J Microbiol, 31, 326

Kim, 1995, Physiological importance of trypsin like protease during morphological differentiation of Streptomyces spp, J Microbiol, 33, 315

10.1042/bj3310539

Kim, 1994, Characteristics of β-lactamase inhibiting protein from Streptomyces exfoliatus SMF19, Appl Environ Microb, 60, 1029, 10.1128/AEM.60.3.1029-1032.1994

10.1016/j.phytochem.2009.04.013

10.1099/ijs.0.65311-0

10.1073/pnas.0404220101

10.1111/j.1365-2958.2005.04921.x

10.1093/protein/3.6.527

10.1271/bbb.62.1392

10.1099/00221287-144-5-1291

Koller, 1989, Heterologous expression of the α-amylase inhibitor gene cloned from an amplified genomic sequence of Streptomyces tendae, J Bacteriol, 171, 4953, 10.1128/jb.171.9.4953-4957.1989

10.1073/pnas.0802312105

10.1111/j.1574-6941.1999.tb00559.x

Kumazaki, 1993, Interaction of Streptomyces subtilisin inhibitor (SSI) with Streptomyces griseus metallo-endopeptidase II (SGMP II), J Biochem, 114, 570, 10.1093/oxfordjournals.jbchem.a124218

10.1111/j.1574-6968.1996.tb08176.x

Kutzner HJ (1981) The family Streptomycetaceae . The Prokaryotes: A Handbook on Habitats, Isolation and Identification of Bacteria ( Starr MP Stolp H Trüper HG Balows A Schlegel H , eds), pp. 2028–2090. Springer-Verlag, Berlin.

Laskowski M Jr Tashiro M Empie MW Park SJ Kato I Ardelt W Wieczorek M (1983) Relationship between the amino acid sequence and inhibitory activity of protein inhibitors of proteinase. Proteinase Inhibitors: Medical and Biological Aspect ( Katunuma N Umezawa H Holzer H , eds), pp. 55–68. Springer-Verlag, Berlin.

10.1101/gad.1.10.1305

Lee, 1998, Dynamics of morphological and physiological differentiation in actinomycetes group and quantitative analysis of the differentiation, J Microbiol Biotechn, 8, 1

Lee, 2008, Functional analysis of a BarX homologue (SngA) as a pleiotropic regulator in Streptomyces nataliensis, Arch Microbiol, 89, 569, 10.1007/s00203-008-0349-7

10.1111/j.1364-3703.2009.00561.x

10.1073/pnas.88.6.2461

Lewis, 2008, Toxic effects of Streptomyces griseus spores and exudate on gill pathology of freshwater fish, Ecotox Environ Safe, 72, 173, 10.1016/j.ecoenv.2008.07.011

10.1007/s004380050346

10.1111/j.1574-6968.2006.00494.x

López D Kolter R (2010) Extracellular signals that define distinct and coexisting cell states in Bacillus subtilis . FEMS Microbiol Rev, in press.

10.1007/s10482-008-9240-4

10.1146/annurev.micro.59.030804.121246

10.7164/antibiotics.24.402

10.7164/antibiotics.32.673

10.1099/mic.0.2007/007922-0

10.1099/00221287-96-2-299

10.1128/AEM.68.9.4472-4479.2002

10.1083/jcb.145.3.515

Mitsui, 1977, Crystal structure of a protein proteinase inhibitor, Streptomyces subtilisin inhibitor, J Biochem, 82, 295, 10.1093/oxfordjournals.jbchem.a131683

Miyadoh S (1997) Atlas of Actinomycetes. The Society for Actinomycetes, Japan.

Moormann, 1993, Biochemical characterization of a protease involved in the processing of a Streptomyces reticuli cellulase (Avicelase), Appl Environ Microb, 59, 1573, 10.1128/AEM.59.5.1573-1578.1993

10.1111/j.1558-5646.2008.00501.x

Muzzarelli, 1999, Native, industrial and fossil chitins, Chitin and Chitinases, 87, 1, 10.1007/978-3-0348-8757-1_1

10.1271/bbb.59.152

10.1128/JB.185.24.7291-7296.2003

10.1074/jbc.274.29.20366

10.1111/j.1462-2920.2007.01314.x

Nodwell, 1998, Purification of an extracellular signaling molecule involved in production of aerial mycelium by Streptomyces coelicolor, J Bacteriol, 180, 1334, 10.1128/JB.180.5.1334-1337.1998

10.1006/jmbi.2000.4042

Obata, 1989, Molecular cloning and nucleotide sequence determination of gene encoding Streptomyces subtilisin inhibitor (SSI), J Biochem, 105, 367, 10.1093/oxfordjournals.jbchem.a122670

10.1073/pnas.96.22.12638

10.1042/0264-6021:3550339

10.1111/j.1574-6968.2007.00907.x

10.1017/S1479050504001462

10.1271/bbb.69.431

10.1128/JB.00204-08

10.1016/0378-1119(92)90552-Z

Pagé, 1996, Effect of signal peptide alterations and replacement on export of xylanase A in Streptomyceslividans, Appl Environ Microb, 62, 109, 10.1128/AEM.62.1.109-114.1996

10.1099/mic.0.26313-0

10.1016/S0966-842X(02)02345-4

10.1016/S0966-842X(01)01956-4

Pasternack, 1998, Bacterial pro-transglutaminase from Streptoverticillium mobaraense. Purification, characterisation and sequence of the zymogen, Eur J Biochem, 257, 570, 10.1046/j.1432-1327.1998.2570570.x

10.7164/antibiotics.46.1126

10.1038/nm859

10.1046/j.1365-2958.1998.00880.x

10.1038/nature07219

10.1074/jbc.M402340200

Ren, 2008, Identification of the gene encoding transglutaminase zymogen from Streptomyces hygroscopicus and its expression in Escherichia coli (article in Chinese), Wei Sheng Wu Xue Bao, 48, 480

10.1099/13500872-140-8-2061

Rho, 1990, Effects of culture environments on alkaline protease biosynthesis in Streptomyces sp, Kor J Microbiol, 28, 162

10.1111/j.1365-2958.2006.05319.x

10.1038/embor.2008.83

10.1021/cr010168i

10.1046/j.1365-2958.2002.03090.x

Ruiz-Arribas, 1997, Analysis of xysA, a gene from Streptomyceshalstedii JM8 that encodes a 45-kilodalton modular xylanase, Xys1, Appl Environ Microb, 63, 2983, 10.1128/AEM.63.8.2983-2988.1997

10.2174/1568005033342064

10.1007/s00438-004-0981-0

10.1128/AEM.02612-06

10.1099/mic.0.2008/019612-0

10.1128/JB.183.23.6727-6732.2001

10.1099/mic.0.26684-0

Schäfer, 1996, Hemicellulose-degrading bacteria and yeasts from the termite gut, Appl Bacteriol, 80, 71

10.1007/s00248-008-9433-4

Schlochtermeier, 1992, Biochemical and electron microscopic studies of the Streptomyces reticuli cellulase (Avicelase) in its mycelium-associated and extracellular forms, Appl Environ Microb, 58, 3240, 10.1128/AEM.58.10.3240-3248.1992

10.1111/j.1365-2958.1992.tb01797.x

Schlösser, 1996, A lipid-anchored binding protein is a component of an ATP-dependent cellobiose/-triose transport system from the cellulose degrader Streptomyces reticuli, Eur J Biochem, 242, 332, 10.1111/j.1432-1033.1996.0332r.x

Schlösser, 1997, The Streptomyces ATP-binding component MsiK assists in cellobiose and maltose transport, J Bacteriol, 179, 2092, 10.1128/jb.179.6.2092-2095.1997

Schlösser, 1999, Characterization of the binding protein-dependent cellobiose and cellotriose transport system of the cellulose degrader Streptomyces reticuli, Appl Environ Microb, 65, 2636, 10.1128/AEM.65.6.2636-2643.1999

10.1111/j.1574-6968.2000.tb09274.x

10.1016/j.febslet.2008.07.049

10.1111/j.1365-2958.1994.tb00473.x

10.1074/jbc.M109.005553

10.1023/A:1012058205158

Schrempf H (2007) Biology of streptomycetes. The Prokaryotes, A Handbook on the Biology of Bacteria. 3rd edn ( Dworkin M Falkow S Rosenberg E Schleifer K-H Stackebrandt E , eds)Springer Verlag, New York, NY.

10.1007/s00294-007-0138-x

10.1126/science.1160423

10.1128/JB.01010-08

10.1074/jbc.272.4.2053

10.1007/s00284-008-9343-1

10.1007/s00284-007-9039-y

Shin, 1986, Regulation of extracellular alkaline proteases biosynthesis in a strain of Streptomyces sp, Kor J Microbiol, 24, 32

10.1099/mic.0.2006/001073-0

10.1002/mabi.200600180

10.1094/PHYTO.1999.89.1.92

10.1139/m78-066

10.1073/pnas.2235593100

10.1016/j.ijbiomac.2007.09.010

10.1021/bi000865p

Sweeney, 1993, Pronase (EC 3.4.24.4), Methods Mol Biol, 16, 271

Szabó G Vályi-Nagy T Vitális S (1962) A new factor regulating life cycle of Streptomyces griseus . Genetics of Microorganisms, Proceedings of a Symposium on Heredity and Variability of Microorganisms ( Timakova VD , ed), pp. 282–292. State Publishing House on Medical Literature, Moscow.

10.1002/(SICI)1096-9888(199912)34:12<1312::AID-JMS885>3.0.CO;2-9

10.1007/BF00291279

10.1101/gad.479408

Taguchi, 1993, Streptomyces subtilisin inhibitor-like proteins are distributed widely in streptomycetes, Appl Environ Microb, 59, 4338, 10.1128/AEM.59.12.4338-4341.1993

Taguchi, 1995, Streptomyces serine protease (SAM-P20): recombinant production, characterization, and interaction with endogenous protease inhibitor, J Bacteriol, 177, 6638, 10.1128/jb.177.22.6638-6643.1995

10.1016/j.mib.2006.04.003

10.1046/j.1365-2958.2003.03728.x

Takeuchi, 1991, Refined crystal structure of the complex of subtilisin BPN and Streptomyces subtilisin inhibitor at 1.8 Å resolution, J Mol Biol, 221, 309

10.1073/pnas.89.10.4407

10.1128/AEM.00251-09

10.1046/j.1365-2958.1998.01093.x

10.1128/AEM.68.5.2161-2171.2002

10.1128/JB.187.18.6341-6353.2005

10.1016/S0378-1119(97)00077-2

10.1074/jbc.273.30.19243

Tsujibo, 1997, Cloning and sequence analysis of genes encoding xylanases and acetyl xylan esterase from Streptomyces thermoviolaceus OPC-520, Appl Environ Microb, l63, 661, 10.1128/AEM.63.2.661-664.1997

10.1128/JB.184.5.1488-1492.2002

10.1073/pnas.0631617100

10.1128/JB.187.1.135-142.2005

10.1146/annurev.mi.36.100182.000451

10.1128/JB.185.4.1455-1458.2003

Van Mellaert, 1998, Molecular characterization of a novel subtilisin inhibitor protein produced by Streptomyces venezuelae CBS762.70, DNA Seq, 9, 19, 10.3109/10425179809050021

10.1128/MMBR.00005-07

Vionis, 1996, Production and processing of a 59 KDa exochitinase during growth of Streptomyceslividans pCHIO12 in soil microcosms amended with crab or fungal chitin, Appl Environ Microb, 62, 1774, 10.1128/AEM.62.5.1774-1780.1996

10.1099/00221287-69-3-353

Vujaklija, 1993, Detection of an A-factor-responsive protein that binds to the upstream activation sequence of strR, a regulatory gene for streptomycin biosynthesis in Streptomyces griseus, J Bacteriol, 175, 2652, 10.1128/jb.175.9.2652-2661.1993

Walter, 1996, The synthesis of the Streptomyces reticuli cellulase (Avicelase) is regulated by both activation and repression, Mol Gen Genet, 251, 186

10.1074/jbc.M212792200

10.1007/s00203-008-0373-7

Walter, 1998, The cell wall-anchored Streptomyces reticuli Avicel-binding protein (AbpS) and its gene, J Bacteriol, 180, 1647, 10.1128/JB.180.7.1647-1654.1998

10.1007/s00438-002-0749-3

10.1099/mic.0.26209-0

10.1271/bbb.58.82

10.1073/pnas.0607025103

10.1016/j.jmb.2007.11.002

10.1099/00221287-60-1-43

10.1016/S0022-5320(71)80149-1

10.1101/gad.7.5.895

10.1111/j.1365-2958.2005.05018.x

10.1016/j.watres.2006.03.020

Wösten, 2000, Surface-active proteins enable microbial aerial hyphae to grow into the air, Microbiology, 146, 767, 10.1099/00221287-146-4-767

10.1007/s00438-002-0640-2

Xie, 2009, Purification and characterization of four keratinases produced by Streptomyces sp strain 16 in native human foot skin medium, Bioresource Technol, 101, 344, 10.1016/j.biortech.2009.08.026

10.1128/JB.01849-07

10.1111/j.1574-6968.2008.01289.x

10.1099/mic.0.28139-0

10.1111/j.1365-2958.2004.04153.x

10.1098/rstb.2007.2044

10.1042/bj2570729

10.1006/abio.1995.0053

Zeltins, 1997, Specific interaction of the Streptomyces chitin-binding protein CHB1 with α-chitin: the role of individual tryptophan residues, Eur J Biochem, 246, 557, 10.1111/j.1432-1033.1997.t01-1-00557.x

10.1021/jf703567t

10.1021/jf8008519

10.1021/bi035501m

Zotzel, 2003, Transglutaminase from Streptomyces mobaraensis is activated by an endogenous metalloprotease, Eur J Biochem, 270, 3214, 10.1046/j.1432-1033.2003.03703.x

Zotzel, 2003, Activated transglutaminase from Streptomyces mobaraensis is processed by tripeptidyl aminopeptidase in the final step, Eur J Biochem, 270, 4149, 10.1046/j.1432-1033.2003.03809.x

Zou, 2000, The heme-independent manganese-peroxidase activity depends on the presence of the C-terminal domain within the Streptomyces reticuli catalase-peroxidase CpeB, Eur J Biochem, 267, 2840, 10.1046/j.1432-1327.2000.01259.x