The chromatin remodeling complex imitation of switch controls stamen filament elongation by promoting jasmonic acid biosynthesis in Arabidopsis
Tài liệu tham khảo
Acosta, 2019, Jasmonate signaling during Arabidopsis stamen maturation, Plant Cell Physiol., 60, 2648, 10.1093/pcp/pcz201
Boavida, 2007, Temperature as a determinant factor for increased and reproducible in vitro pollen germination in Arabidopsis thaliana, Plant J., 52, 570, 10.1111/j.1365-313X.2007.03248.x
Caldelari, 2011, Arabidopsis lox3 lox4 double mutants are male sterile and defective in global proliferative arrest, Plant Mol. Biol., 75, 25, 10.1007/s11103-010-9701-9
Chen, 2008, Firefly luciferase complementation imaging assay for protein‒protein interactions in plants, Plant Physiol., 146, 368, 10.1104/pp.107.111740
Chu, 2017, Quantitative analysis of plant hormones based on LC-MS/MS, 471
Dong, 2013, SLIDE, the protein interacting domain of imitation switch remodelers, binds DDT-domain proteins of different subfamilies in chromatin remodeling complexes, J. Integr. Plant Biol., 55, 928, 10.1111/jipb.12069
Feys, 1994, Arabidopsis mutants selected for resistance to the phytotoxin coronatine are male sterile, insensitive to methyl jasmonate, and resistant to a bacterial pathogen, Plant Cell, 6, 751, 10.2307/3869877
Fu, 2012, Simple, rapid, and simultaneous assay of multiple carboxyl containing phytohormones in wounded tomatoes by UPLC-MS/MS using single SPE purification and isotope dilution, Anal. Sci., 28, 1081, 10.2116/analsci.28.1081
Grasser, 2007, Basic and acidic regions flanking the HMG-box domain of maize HMGB1 and HMGB5 modulate the stimulatory effect on the DNA binding of transcription factor Dof2, Biochemistry, 46, 6375, 10.1021/bi6024947
Gu, 2020, FHA2 is a plant-specific ISWI subunit responsible for stamen development and plant fertility, J. Integr. Plant Biol., 62, 1703, 10.1111/jipb.12945
Guetg, 2010, The NoRC complex mediates the heterochromatin formation and stability of silent rRNA genes and centromeric repeats, EMBO J., 29, 2135, 10.1038/emboj.2010.17
Hamberg, 1992, Oxylipin pathway to jasmonates: biochemistry and biological significance, Biochim. Biophys. Acta, 1165, 1, 10.1016/0005-2760(92)90069-8
Huanca-Mamani, 2005, CHR11, a chromatin-remodeling factor essential for nuclear proliferation during female gametogenesis in Arabidopsis thaliana, Proc. Natl. Acad. Sci. U. S. A., 102, 17231, 10.1073/pnas.0508186102
Ishiguro, 2001, The DEFECTIVE IN ANTHER DEHISCIENCE gene encodes a novel phospholipase A1 catalyzing the initial step of jasmonic acid biosynthesis, which synchronizes pollen maturation, anther dehiscence, and flower opening in Arabidopsis, Plant Cell, 13, 2191, 10.1105/tpc.010192
Li, 2017, The ISWI remodeler in plants: protein complexes, biochemical functions, and developmental roles, Chromosoma, 126, 365, 10.1007/s00412-017-0626-9
Li, 2010, Jarid2 and PRC2, partners in regulating gene expression, Genes Dev., 24, 368, 10.1101/gad.1886410
Li, 2012, Imitation switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis, Plant J., 72, 261, 10.1111/j.1365-313X.2012.05074.x
Li, 2017, A reciprocal inhibition between ARID1 and MET1 in male and female gametes in Arabidopsis, J. Integr. Plant Biol., 59, 657, 10.1111/jipb.12573
Li, 2009, SOAP2: an improved ultrafast tool for short read alignment, Bioinformatics, 25, 1966, 10.1093/bioinformatics/btp336
Liao, 2014, featureCounts: an efficient general purpose program for assigning sequence reads to genomic features, Bioinformatics, 30, 923, 10.1093/bioinformatics/btt656
Park, 2002, A knock-out mutation in allene oxide synthase results in male sterility and defective wound signal transduction in Arabidopsis due to a block in jasmonic acid biosynthesis, Plant J., 31, 1, 10.1046/j.1365-313X.2002.01328.x
Pasini, 2010, JARID2 regulates binding of the Polycomb repressive complex 2 to target genes in ES cells, Nature, 464, 306, 10.1038/nature08788
Peng, 2009, Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells, Cell, 139, 1290, 10.1016/j.cell.2009.12.002
Robinson, 2010, edgeR: a Bioconductor package for differential expression analysis of digital gene expression data, Bioinformatics, 26, 139, 10.1093/bioinformatics/btp616
Sanders, 2000, The Arabidopsis DELAYED DEHISCENCE1 gene encodes an enzyme in the jasmonic acid synthesis pathway, Plant Cell, 12, 1041, 10.1105/tpc.12.7.1041
Shen, 2009, Jumonji modulates polycomb activity and self-renewal versus differentiation of stem cells, Cell, 139, 1303, 10.1016/j.cell.2009.12.003
Smaczniak, 2012, Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development, Proc. Natl. Acad. Sci. U. S. A., 109, 1560, 10.1073/pnas.1112871109
Staswick, 2004, The oxylipin signal jasmonic acid is activated by an enzyme that conjugates it to isoleucine in Arabidopsis, Plant Cell, 16, 2117, 10.1105/tpc.104.023549
Stenzel, 2012, ALLENE OXIDE CYCLASE (AOC) gene family members of Arabidopsis thaliana: tissue- and organ-specific promoter activities and in vivo heteromerization, J. Exp. Bot., 63, 6125, 10.1093/jxb/ers261
Stintzi, 2000, The Arabidopsis male-sterile mutant, opr3, lacks the 12-oxophytodienoic acid reductase required for jasmonate synthesis, Proc. Natl. Acad. Sci. U. S. A., 97, 10625, 10.1073/pnas.190264497
Stopka, 2003, The ISWI ATPase Snf2h is required for early mouse development, Proc. Natl. Acad. Sci. U. S. A., 100, 14097, 10.1073/pnas.2336105100
Tan, 2020, Dual recognition of H3K4me3 and DNA by the ISWI component ARID5 regulates the floral transition in Arabidopsis, Plant Cell, 32, 2178, 10.1105/tpc.19.00944
Tan, 2018, The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing, EMBO J., 37, 10.15252/embj.201798770
Tsukiyama, 1994, ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor, Nature, 367, 525, 10.1038/367525a0
Tsukiyama, 1999, Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae, Genes Dev., 13, 686, 10.1101/gad.13.6.686
Wang, 2020, Tasselseed5 encodes a cytochrome C oxidase that functions in sex determination by affecting jasmonate catabolism in maize, J. Integr. Plant Biol., 62, 247, 10.1111/jipb.12826
Wang, 2015, Egg cell-specific promoter-controlled CRISPR/Cas9 efficiently generates homozygous mutants for multiple target genes in Arabidopsis in a single generation, Genome Biol., 16, 144, 10.1186/s13059-015-0715-0
Wiechens, 2016, The chromatin remodelling enzymes SNF2H and SNF2L position nucleosomes adjacent to CTCF and other transcription factors, PLoS Genet., 12, 10.1371/journal.pgen.1005940
Wilsker, 2005, Nomenclature of the ARID family of DNA-binding proteins, Genomics, 86, 242, 10.1016/j.ygeno.2005.03.013
Wu, 2013, ARID4A and ARID4B regulate male fertility, a functional link to the AR and RB pathways, Proc. Natl. Acad. Sci. U. S. A., 110, 4616, 10.1073/pnas.1218318110
Wu, 2021, Heterochromatic silencing is reinforced by ARID1-mediated small RNA movement in Arabidopsis pollen, New Phytol., 229, 3269, 10.1111/nph.16871
Wu, 2019, Intercellular delivery of small RNAs in plant gametes, New Phytol., 224, 86, 10.1111/nph.15854
Zheng, 2014, An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana, PLoS Genet., 10, 10.1371/journal.pgen.1004421
Zhu, 2008, A novel ARID DNA-binding protein interacts with SymRK and is expressed during early nodule development in Lotus japonicus, Plant Physiol., 148, 337, 10.1104/pp.108.119164