The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

Scientific data - Tập 3 Số 1
Krzysztof J. Gorgolewski1, Tibor Auer2, Vince D. Calhoun3, R. Cameron Craddock4, Samir Das5, Eugene Duff6, Guillaume Flandin7, Satrajit Ghosh8, Tristan Glatard5, Yaroslav Halchenko9, Daniel A. Handwerker10, Michael Hanke11, David B. Keator12, Xiangrui Li13, Zachary Michael14, Camille Maumet15, B. Nolan Nichols16, Thomas E. Nichols15, John Pellman17, Jean‐Baptiste Poline18, Ariel Rokem19, Gunnar Schaefer20, Vanessa Sochat21, William Triplett1, Jessica A. Turner22, Gaël Varoquaux23, Russell A. Poldrack1
1Department of Psychology, Stanford University, Stanford, California 94305 USA
2MRC Cognition and Brain Sciences Unit, Cambridge, CB2 7EF, UK
3The Mind Research Network, Albuquerque, New Mexico 87131, USA
4Computational Neuroimaging Lab, Center for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, New York 10962, USA
5McGill Centre for Integrative Neuroscience, Ludmer Centre, Montreal Neurological Institute, Montreal, Quebec, Canada H3A 2B4
6FMRIB Centre, University of Oxford, Oxford, OX3 9DU, UK
7Wellcome Trust Centre for Neuroimaging, University College, London WC1N 3BG, UK
8McGovern Institute for Brain Research, MIT, Cambridge, Massachusetts 02139, USA
9Department of Psychological and Brain Sciences, Dartmouth College, Hanover, New Hampshire, 03755, USA
10Intramural Research Program, National Institute of Mental Health, Bethesda, Maryland 20814, USA
11Department of Psychology, Otto-von-Guericke-University, Magdeburg 39016, Germany
12Department of Psychiatry and Human Behavior, University of California, Irvine 92697, California, USA
13Center for Cognitive and Behavioral Brain Imaging, The Ohio State University, Columbus, 43210, Ohio, USA
14Squishymedia, Portland, Oregon 97232, USA
15WMG, University of Warwick, Coventry CV4 7AL, UK
16Center for Health Sciences, SRI International, Menlo Park, California 94025, USA
17Center for the Developing Brain, Child Mind Institute, New York, New York 10022, USA
18Henry Wheeler Jr. Brain Imaging Center, Helen Wills Neuroscience Institute, University of California, Berkeley, California 94720, USA
19The University of Washington eScience Institute, Seattle, Washington 98195, USA
20Flywheel Exchange, LLC, Minneapolis, Minnesota 55405, USA
21Program in Biomedical Informatics, Stanford University, Stanford, California 94305, USA
22Department of Psychology & the Neuroscience Institute, Georgia State University, Atlanta, Georgia 30302, USA
23Parietal team, INRIA Saclay, Palaiseau 91120, FR

Tóm tắt

Abstract

The development of magnetic resonance imaging (MRI) techniques has defined modern neuroimaging. Since its inception, tens of thousands of studies using techniques such as functional MRI and diffusion weighted imaging have allowed for the non-invasive study of the brain. Despite the fact that MRI is routinely used to obtain data for neuroscience research, there has been no widely adopted standard for organizing and describing the data collected in an imaging experiment. This renders sharing and reusing data (within or between labs) difficult if not impossible and unnecessarily complicates the application of automatic pipelines and quality assurance protocols. To solve this problem, we have developed the Brain Imaging Data Structure (BIDS), a standard for organizing and describing MRI datasets. The BIDS standard uses file formats compatible with existing software, unifies the majority of practices already common in the field, and captures the metadata necessary for most common data processing operations.

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