The bacterial catabolism of polycyclic aromatic hydrocarbons: Characterization of three hydratase-aldolase-catalyzed reactions

Perspectives in Science - Tập 9 - Trang 33-41 - 2016
Jake A. LeVieux1, William H. Johnson1, Kaci Erwin1, Wenzong Li1, Yan Jessie Zhang1, Christian P. Whitman1
1Division of Chemical Biology and Medicinal Chemistry, College of Pharmacy, and the Department of Molecular Biosciences, The University of Texas, Austin, TX 78712, United States

Tài liệu tham khảo

Atlas, 2011, Oil biodegradation and bioremediation: a tale of two worst spills in U.S. history, Environ. Sci. Technol., 45, 6709, 10.1021/es2013227 Barbosa, 2000, Active site modulation in the N-acetylneuraminate lyase sub-family as revealed by the structure of the inhibitor-complexed Haemophilus influenzae enzyme, J. Mol. Biol., 303, 405, 10.1006/jmbi.2000.4138 Choi, 2006, New superfamily members identified for Schiff-base enzymes based on verification of catalytically essential residues, Biochemistry, 45, 8546, 10.1021/bi060239d Daniels, 2014, Reaction mechanism of N-acetylneuraminic acid lyase revealed by a combination of crystallography, QM/MM simulation, and mutagenesis, ACS Chem. Biol., 9, 1025, 10.1021/cb500067z Eaton, 1992, Bacterial metabolism of naphthalene: construction and use of recombinant bacteria to study ring cleavage of 1,2-dihydroxynaphthalene and subsequent reactions, J. Bacteriol., 174, 7542, 10.1128/JB.174.23.7542-7554.1992 Heitkamp, 1988, Mineralization of polycyclic aromatic hydrocarbons by a bacterium isolated from sediment below an oil field, Appl. Environ. Microbiol., 54, 1612, 10.1128/AEM.54.6.1612-1614.1988 Joye, 2015, Deepwater horizon 5 years on, Science, 349, 592, 10.1126/science.aab4133 Khan, 2002, Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Mycobacterium sp. strain PYR-1, as Mycobacterium vanbaalenii sp. nov, Int. J. Syst. Evol. Microbiol., 52, 1997 Kimes, 2014, Microbial transformation of the Deepwater Horizon oil spill – past, present, and future perspectives, Front. Microbiol., 5, 603, 10.3389/fmicb.2014.00603 Kweon, 2011, Polycyclic aromatic hydrocarbon metabolic network in Mycobacterium vandaalenii PYR-1, J. Bacteriol., 193, 4326, 10.1128/JB.00215-11 Manjasetty, 2003, Crystal structure of a bifunctional aldolase-dehydrogenase: sequestering a reactive and volatile intermediate, Proc. Natl. Acad. Sci. U. S. A., 100, 6992, 10.1073/pnas.1236794100 Ruzzini, 2013, A substrate-assisted mechanism of nucleophile activation in a Ser-His-Asp containing C–C bond hydrolase, Biochemistry, 52, 7428, 10.1021/bi401156a Seah, 2000, Identification of a serine hydrolase as a key determinant in the microbial degradation of polychlorinated biphenyls, J. Biol. Chem., 275, 15701, 10.1074/jbc.275.21.15701 Stingley, 2004, Molecular characterization of a phenanthrene degradation pathway in Mycobacterium vandaalenii PYR-1, Biochem. Biophys. Res. Commun., 322, 133, 10.1016/j.bbrc.2004.07.089 Thompson, 2007, 2-Hydroxychromene-2-carboxylic acid isomerase: a kappa class glutathione transferase from Pseudomonas putida, Biochemistry, 46, 6710, 10.1021/bi700356u