The Top 10 oomycete pathogens in molecular plant pathology

Molecular Plant Pathology - Tập 16 Số 4 - Trang 413-434 - 2015
Sophien Kamoun1, Oliver J. Furzer1, Jonathan D. G. Jones1, Howard S. Judelson2, Gul Shad Ali3, Ronaldo J. D. Dalio4,5, Sanjoy Guha Roy6,7, Leonardo Schena8, Antonios Zambounis9, Franck Panabières10,11, David M. Cahill12, Michelina Ruocco13, Andreia Figueiredo14, Xiao‐Ren Chen15,16,17, Jon Hulvey18, Remco Stam19, Kurt Lamour20, Mark Gijzen21, Brett M. Tyler22, Niklaus J. Grünwald23, M. Shahid Mukhtar24,25, Daniel F. A. Tomé26, Mahmut Tör27, Guido Van den Ackerveken28, John M. McDowell29, Fouad Daayf30, William E. Fry31, Hannele Lindqvist‐Kreuze32, H.J.G. Meijer33, Benjamin Pêtre34,1, Jean B. Ristaino35, Kentaro Yoshida1, Paul R. J. Birch19, Francine Govers33
1The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, UK
2Department of Plant Pathology and Microbiology, University of California, Riverside, CA, 92521, USA
3Department of Plant Pathology and MREC IFAS University of Florida Apopka FL 32703 USA
4Biotechnology Laboratory Centro de Citricultura Sylvio Moreira/Instituto Agronomico Cordeirópolis Sao Paulo 13490‐970 Brazil
5Department of Plant Pathology and MREC, IFAS [University of Florida]
6Centro de Citricultura Sylvio Moreira/Instituto Agronomico
7Department of Botany West Bengal State University Barasat Kolkata 700126 India
8Dipartimento di Gestione dei Sistemi Agrari e Forestali Università degli Studi Mediterranea 89122 Reggio Calabria Italy
9UMR1290 BIOGER‐CPP INRA‐AgroParisTech 78850 Thiverval‐Grignon France
10BIOlogie et GEstion des Risques en agriculture
11INRA UMR1355 Université Nice Sophia Antipolis CNRS, UMR7254, ISA F‐06903 Sophia Antipolis France
12Deakin University, Geelong, VIC 3217, Australia
13Portici Division of the Italian National Research Council (CNR) Institute for Sustainable Plant Protection (IPSP) Via Università 133 80055 Portici NA Italy
14Centre for Biodiversity, Functional and Integrative Genomics Faculty of Sciences University of Lisboa 1749‐016 Lisbon Portugal
15Center for Biodiversity, Functional & Integrative Genomics
16College of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China
17Stockbridge School of Agriculture
18Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA 01003 (USA)
19Division of Plant Sciences College of Life Sciences University of Dundee (at James Hutton Institute) Errol Road Invergowrie DD2 5DA UK
20Department of Entomology and Plant Pathology University of Tennessee TN 37996 USA
21Agriculture and Agri‐Food Canada 1391 Sandford Street London ON Canada N5V 4T3
22Center for Genome Research and Biocomputing Department of Botany and Plant Pathology Oregon State University Corvallis OR 97331 USA
23USDA ARS Plant Pathology Horticultural Crops Research Lab 3420 NW Orchard Ave. Corvallis Oregon 97330 United States
24Department of Biology University of Alabama at Birmingham Birmingham AL 35294‐1170 USA
25Nutrition Obesity Research Center, University of Alabama at Birmingham, Birmingham, AL 35294, USA
26School of Life Sciences, University of Warwick, Coventry CV4 7AL, UK
27National Pollen and Aerobiology Research Unit The University of Worcester Henwick Grove Worcester WR2 6AJ UK
28Plant–Microbe Interactions, Department of Biology, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands
29Department of Plant Pathology, Physiology, and Weed Science, Virginia Tech, Blacksburg, VA 24061, USA
30Department of Plant Science, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada
31Department of Plant Pathology and Plant–Microbe Biology, Cornell University, Ithaca, NY 14853, USA
32International Potato Center, Apartado 1558, Lima 12, Peru
33Laboratory of Phytopathology Wageningen University NL‐1‐6708 PB Wageningen the Netherlands
34INRA, UMR1136 Interactions Arbres/Microorganismes Centre INRA Nancy Lorraine 54280 Champenoux France
35Department of Plant Pathology, North Carolina State University, Raleigh, NC 27695 USA

Tóm tắt

SummaryOomycetes form a deep lineage of eukaryotic organisms that includes a large number of plant pathogens which threaten natural and managed ecosystems. We undertook a survey to query the community for their ranking of plant‐pathogenic oomycete species based on scientific and economic importance. In total, we received 263 votes from 62 scientists in 15 countries for a total of 33 species. The Top 10 species and their ranking are: (1) Phytophthora infestans; (2, tied) Hyaloperonospora arabidopsidis; (2, tied) Phytophthora ramorum; (4) Phytophthora sojae; (5) Phytophthora capsici; (6) Plasmopara viticola; (7) Phytophthora cinnamomi; (8, tied) Phytophthora parasitica; (8, tied) Pythium ultimum; and (10) Albugo candida. This article provides an introduction to these 10 taxa and a snapshot of current research. We hope that the list will serve as a benchmark for future trends in oomycete research.

Từ khóa


Tài liệu tham khảo

10.1371/journal.pone.0075072

10.1094/PHYTO.2003.93.8.959

Agrios G.N., 2005, Plant Pathology

10.1046/j.1365-2958.2003.03735.x

10.1016/j.cropro.2013.06.007

10.1007/s10142-013-0314-7

10.1126/science.1104022

Andres J.L., 2003, Phytophthora nicotianae pathogenic to pepper in northwest spain, J. Plant Pathol., 85, 91

10.1073/pnas.0500113102

10.1016/j.jplph.2007.06.011

10.1111/j.1469-8137.2010.03272.x

Australian Government Department of Environment, 2014, Threat Abatement Plan for Disease in Natural Ecosystems Caused by Phytophthora cinnamomi

Awasthi R.P., 2012, Screening of putative resistant sources against Indian and exotic isolates of Albugo candida inciting white rust in rapeseed‐mustard, J. Oilseed Brassica, 3, 27

10.1111/j.1439-0434.1985.tb00786.x

10.1126/science.1195203

10.1016/j.fgb.2010.02.009

10.1111/j.1439-0434.1994.tb01442.x

10.1094/MPMI.2004.17.7.711

10.1094/MPMI-21-6-0757

10.1111/j.1364-3703.2009.00599.x

10.1073/pnas.0914408107

10.1016/j.pbi.2012.03.008

10.1038/466824a

10.1111/j.1365-3059.2008.01886.x

10.1111/j.1365-3059.2010.02278.x

10.1371/journal.pone.0019328

10.1094/MPMI-10-11-0269

10.1111/j.1365-313X.2011.04787.x

10.1007/s00425-011-1461-5

10.1073/pnas.251464498

10.1128/AEM.00507-07

10.1371/journal.pone.0074588

10.1094/PHP‐2008‐0318‐01‐RS

10.1146/annurev-phyto-080508-094422

10.1094/PHYTO.1998.88.3.205

10.1094/MPMI.2001.14.3.326

10.1371/journal.ppat.1002940

10.1094/MPMI-21-6-0745

10.1007/s13313-013-0260-9

Crute I., 1994, Arabidopsis, 705

10.1111/j.1364-3703.2011.00783.x

10.3366/E0260954108000351

10.1016/j.meegid.2013.10.017

10.1093/treephys/tps076

10.1007/978-94-015-9733-3

10.1126/science.1246300

10.1002/9780470475898.ch10

10.1105/tpc.107.056093

10.1007/BF01876244

10.1094/PDIS-03-10-0221

10.1007/s10530-009-9512-6

10.1111/j.1439-0329.2009.00627.x

10.1139/b97-864

Erwin D.C., 1996, Phytophthora Diseases Worldwide

10.1186/1471-2229-14-68

10.1371/journal.ppat.1002348

10.1371/journal.pone.0077181

Farr D.F.andRossman A.Y.(2014)Fungal databases Systematic Mycology and Microbiology Laboratory ARS USDA. Available at:http://nt.ars‐grin.gov/fungaldatabases/[accessed on Oct 6 2014].

10.4238/2013.April.26.8

10.1016/j.micpath.2010.03.004

10.1038/nature10947

10.1111/mec.12293

10.1094/PHYTO.1997.87.4.454

10.1094/PDIS-08-12-0791-FE

Galet P., 1977, Mildiou

10.1128/EC.00195-12

Gessler C., 2011, Plasmopara viticola: a review of knowledge on downy mildew of grapevine and effective disease management, Phytopathol. Mediterr., 50, 3

10.1002/9780470475898.ch15

10.1111/j.1365-3059.2005.01208.x

10.1007/s11557-011-0787-5

Gobena D.J., 2010, Genetic diversity of the vegetable pathogen Phytophthora capsici in Argentina, Phytopathology, 100, S41

10.1016/j.cropro.2013.08.015

10.1007/BF00351469

10.1073/pnas.91.24.11591

10.1111/j.1365-294X.2009.04089.x

10.1371/journal.ppat.1000583

10.1094/PHYTO-05-10-0133

10.1371/journal.pone.0079347

10.1094/MPMI-19-1295

Gracia‐Garza J.A., 2003, Efficacy of various biological control agents and biorationals against Pythium root rot in poinsettia, Horttechnology, 13, 149, 10.21273/HORTTECH.13.1.0149

10.1094/PHYTO-99-11-1258

10.1094/PDIS-02-12-0211-FE

10.1016/j.funbio.2013.01.001

10.1111/j.1364-3703.2008.00500.x

10.1094/PHYTO-99-7-0792

10.1016/j.tim.2011.12.006

10.1111/j.1439-0434.2008.01537.x

10.1073/pnas.84.16.5823

10.1071/FP13023

10.1038/nature08358

10.1094/PDIS.2004.88.12.1292

10.1007/s11540-008-9089-y

10.1079/9781780640938.0124

10.1016/j.mycres.2009.01.009

10.1139/b59-079

10.1094/MPMI-8-0916

10.1007/s10658-008-9286-1

10.1094/PDIS-03-11-0156-RE

10.1371/journal.pone.0082691

10.1111/j.1365-3059.2011.02535.x

10.3852/09-102

10.1094/PHYTO-98-6-0688

10.1007/s11051-013-1676-4

10.1146/annurev-phyto-081211-172912

10.1073/pnas.0709303105

10.1111/mpp.12057

10.1006/fgbi.1997.1006

10.1038/nrmicro1064

10.1007/BF00518171

10.1094/MPMI-4-602

10.1111/efp.12025

10.1186/gb-2013-14-6-r63

10.1016/j.cell.2010.06.008

10.1146/annurev.phyto.44.070505.143436

10.1006/fgbi.1999.1166

10.1371/journal.pone.0034728

Kaufmann M.J., 1958, Root and stem rot of soybeans caused by Phytophthora sojae n. sp., Phytopathology, 48, 201

10.1071/AP08008

10.1371/journal.pbio.1001094

10.1094/PHYTO-97-4-0512

10.1111/j.1365-3059.2007.01634.x

Koch E.andSlusarenko A.(1990)Arabidopsis is susceptible to infection by a downy mildew fungus.2 437–445.

10.3852/10-278

Lalancette N., 1987, A model for predicting the sporulation of Plasmopara viticola based on temperature and duration of high relative‐humidity, Phytopathology, 77, 1699

10.1094/PHYTO.2000.90.4.396

Lamour K.H., 2013, Diversity and Phytophthora: a threat to forests, crops and traditional laboratory research—mini review, CAB Rev., 8

10.1002/9780470475898

10.1094/MPMI-02-12-0028-R

10.1016/j.tplants.2013.05.005

Leonian L.H., 1922, Stem and fruit blight of peppers caused by Phytophthora capsici sp. nov, Phytopathology, 12, 401

10.1186/gb-2010-11-7-r73

10.1007/s12230-010-9174-z

10.1186/1471-2164-12-503

10.1093/molbev/msi049

10.21273/HORTSCI.39.6.1193

Lucas J., 1995, Pathogenesis and Host Specificity in Plant Diseases, 217

10.1094/Phyto-85-269

10.1094/PDIS.2000.84.5.549

10.1007/s11032-013-9875-3

10.1016/j.funbio.2011.02.018

10.1094/PHYTO-10-12-0263-R

10.1111/j.1364-3703.2012.00804.x

10.2307/3760830

10.1016/S0735-2689(99)00389-5

10.1038/ncomms3172

10.1093/molbev/msu086

10.1094/PD-74-0138

10.1073/pnas.1105802108

10.1111/cmi.12254

10.1071/AP09075

Millardet A.(1881)Notes sur les vignes américaines et opuscules divers sur le même sujet.Bordeaux.

10.1111/j.1365-3059.2008.01930.x

10.1016/0885-5765(92)90067-6

10.1126/science.1203659

10.1021/am303208t

10.1046/j.1365-2672.2000.00939.x

10.1094/PDIS-09-10-0619

10.1094/PDIS-04-12-0348-RE

10.1186/gb-2013-14-6-211

10.1186/1471-2229-10-147

10.1080/07060661.2014.892900

Petrie G.A., 1975, Prevalence of oospores of Albugo cruciferarum in Brassica seed samples from western Canada 1967–1973, Can. Plant Dis. Surv., 55, 19

10.1007/BF00037062

10.1111/j.1365-294X.2011.05188.x

10.1094/PHYTO-100-6-0619

10.1104/pp.123.1.243

10.1105/tpc.106.044180

10.1038/ncomms2354

10.1126/science.1193070

10.1111/mpp.12124

10.1371/journal.pone.0086399

10.1105/tpc.105.031807

10.1080/07060660009500468

10.1146/annurev.phyto.42.040803.140418

10.1111/mpp.12036

10.1016/j.pmpp.2008.08.005

10.1094/PHYTO-08-11-0223

Rossi V., 2009, Modelling the dynamics of infections caused by sexual and asexual spores during Plasmopara viticola epidemics, J. Plant Pathol., 91, 615

10.1007/s10658-012-0114-2

10.1111/nph.12016

10.1186/1471-2164-14-106

Saadoun M., 2008, Pathogenic variability of Phytophthora nicotianae on pepper in tunisia, J. Plant Pathol., 90, 351

10.1111/j.1364-3703.2011.00752.x

10.1111/j.1364-3703.2009.00593.x

10.1073/pnas.1008491107

10.1094/PDIS-03-12-0243-FE

10.1104/pp.110.167841

10.1007/s10457-012-9533-5

Shaw D.S., 1983, Zoosporic Plant Pathogens, 85

10.1046/j.1364-3703.2003.00166.x

10.1073/pnas.0809201106

10.1016/j.pmpp.2003.12.002

10.3389/fpls.2013.00387

10.1371/journal.pone.0059517

10.1094/Phyto-61-157

10.1016/S0141-0229(99)00146-5

10.1098/rspb.2010.1603

10.1080/07060660809507539

10.1002/dvg.20530

10.1007/s00122-010-1295-8

10.1094/PDIS-92-4-0492

10.1007/s10658-013-0366-5

10.1016/j.pbi.2010.04.001

Thines M., 2005, A revision of Albugo (chromista, peronosporomycetes), Mycotaxon, 92, 443

10.3767/003158509X457931

10.1111/gcb.12463

10.1074/jbc.M400941200

10.1201/b10948-8

10.1101/gr.910003

10.1094/MPMI-20-7-0781

10.1111/j.1364-3703.2006.00373.x

10.1126/science.1128796

10.1007/S10267-010-0046-7

10.1139/w2012-092

10.1006/fgbi.1997.0981

10.1016/j.funbio.2012.09.003

10.1016/S1097-2765(00)80461-X

10.1007/s10658-010-9635-8

Viennot‐Bourgin G., 1949, Les Champignons Parasites des Plantes Cultivées

10.1371/journal.pone.0002875

10.1146/annurev-phyto-072910-095326

10.1094/PDIS.1997.81.9.1085

10.1105/tpc.111.086082

10.1007/s00294-002-0359-y

10.1016/S0953-7562(08)61986-3

10.1038/nature06203

10.1038/nrmicro3118

10.1046/j.1365-3059.2001.00573.x

Wrather J.A., 2006, Estimates of disease effects on soybean yields in the United States 2003 to 2005, J. Nematol., 38, 173

10.7554/eLife.00731

10.1371/journal.ppat.1004028

10.1007/s11540-008-9091-4

10.1371/journal.pone.0072572