The Real maccoyii: Identifying Tuna Sushi with DNA Barcodes – Contrasting Characteristic Attributes and Genetic Distances
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BB Collette, Mackerels, molecules, and morphology; 1999; Nouméa. Société Française d'Ichthyologie., 149
S Issenberg, 2007, The sushi economy: globalization and the making of a modern delicacy.
2008, Sushi guide.
R Ellis, 2008, Tuna: a love story.
C Safina, 1998, Song for the blue ocean: encounters along the world's coasts and beneath the seas.
2006, World record game fishes.
CS Wardle, 1989, The muscle twitch and the maximum swimming speed of giant bluefin tuna, <italic>Thunnus thynnus</italic>, Journal of Fish Biology, 35, 129, 10.1111/j.1095-8649.1989.tb03399.x
JR Rooker, 2008, Evidence of trans-Atlantic movement and natal homing of bluefin tuna from stable isotopes in otoliths., Marine Ecology-Progress Series, 368, 231, 10.3354/meps07602
BA Block, 2001, Migratory movements, depth preferences, and thermal biology of Atlantic bluefin tuna., Science, 293, 1310, 10.1126/science.1061197
T Kitagawa, 2007, Horizontal and vertical movements of juvenile bluefin tuna (<italic>Thunnus orientalis</italic>) in relation to seasons and oceanographic conditions in the eastern Pacific Ocean., Fisheries Oceanography, 16, 409, 10.1111/j.1365-2419.2007.00441.x
DJ Marcinek, 2001, Depth and muscle temperature of Pacific bluefin tuna examined with acoustic and pop-up satellite archival tags., Marine Biology, 138, 869, 10.1007/s002270000492
JR Rooker, 2008, Natal homing and connectivity in Atlantic bluefin tuna populations., Science, 322, 742, 10.1126/science.1161473
CJ Farwell, 2001, Tunas in captivity., 391
JL Jacquet, 2008, Trade secrets: renaming and mislabeling of seafood., Marine Policy, 32, 309, 10.1016/j.marpol.2007.06.007
YHP Hsieh, 1998, Species substitution of restaurant fish entrees., Journal of Food Quality, 21, 1, 10.1111/j.1745-4557.1998.tb00499.x
YHP Hsieh, 1995, Species substitution of retail snapper fillets., Journal of Food Quality, 18, 131, 10.1111/j.1745-4557.1995.tb00368.x
EHK Wong, 2008, DNA barcoding detects market substitution in North American seafood., Food Research International, 41, 828, 10.1016/j.foodres.2008.07.005
R Froese, 2008
CS Baker, 2008, A truer measure of the market: the molecular ecology of fisheries and wildlife trade., Molecular Ecology, 17, 3985, 10.1111/j.1365-294X.2008.03867.x
F Teletchea, 2005, Food and forensic molecular identification: update and challenges., Trends in Biotechnology, 23, 359, 10.1016/j.tibtech.2005.05.006
D Rubinoff, 2006, A genomic perspective on the shortcomings of mitochondrial DNA for “barcoding” identification., Journal of Heredity, 97, 581, 10.1093/jhered/esl036
DH Janzen, 2004, Now is the time., Proceedings of the Royal Society of London Series B Biological Sciences, 359, 731, 10.1098/rstb.2003.1444
JB Hearnshaw, 1986, The analysis of starlight: one hundred and fifty years of astronomical spectroscopy.
J Schwartz, 2008, Fish tale has DNA hook: students find bad labels.
S Ratnasingham, 2007, Molecular Ecology Notes, Molecular Ecology Notes, 7, 355
D Fox, 2008, Impostor fish., Conservation Magazine 9: Feature
HCJ Godfray, 2004, Taxonomy for the twenty-first century – Introduction., Philosophical Transactions of the Royal Society of London Series B Biological Sciences, 359, 559
R DeSalle, 2005, The unholy trinity: taxonomy, species delimitation and DNA barcoding., Philosophical Transactions of the Royal Society of London Series B Biological Sciences, 360, 1905, 10.1098/rstb.2005.1722
BB Collette, 1979, Adaptations and systematics of the mackerels and tunas., 7
E Mayr, 1982, The growth of biological thought: diversity, evolution, and inheritance.
JI Davis, 1992, Populations, genetic variation, and the delimitation of phylogenetic species., Systematic Biology, 41, 421, 10.1093/sysbio/41.4.421
R DeSalle, 2006, What's in a character?, Journal of Biomedical Informatics, 39, 6, 10.1016/j.jbi.2005.11.002
G Amato, 1999, A new species of muntjac, <italic>Muntiacus putaoensis</italic> (Artiodactyla: Cervidae) from northern Myanmar., Animal Conservation, 2, 1, 10.1111/j.1469-1795.1999.tb00042.x
PDN Hebert, 2003, Biological identifications through DNA barcodes., Proceedings of the Royal Society of London Series B Biological Sciences, 270, 313, 10.1098/rspb.2002.2218
RR Sokal, 1963, Principles of numerical taxonomy.
A Hamilton, 2008, Taxonomy and why history of science matters for science., Isis, 99, 10, 10.1086/588691
PD Hebert, 2004, Identification of birds through DNA Barcodes., PLoS Biology, 2, e312, 10.1371/journal.pbio.0020312
N Saitou, 1987, The neighbor-joining method–A new method for reconstructing phylogenetic trees., Molecular Biology and Evolution, 4, 406
CP Meyer, 2005, DNA barcoding: error rates based on comprehensive sampling., PLoS Biology, 3, 2229, 10.1371/journal.pbio.0030422
PZ Goldstein, 2000, Conservation genetics at the species boundary., Conservation Biology, 14, 120, 10.1046/j.1523-1739.2000.98122.x
JWH Ferguson, 2002, On the use of genetic divergence for identifying species., Biological Journal of the Linnean Society, 75, 509, 10.1046/j.1095-8312.2002.00042.x
M Elias, 2007, Limited performance of DNA barcoding in a diverse community of tropical butterflies., Proceedings of the Royal Society of London Series B Biological Sciences, 274, 2881, 10.1098/rspb.2007.1035
PM Miyake, A brief history of the tuna fisheries of the world., 23
BB Collette, 2001, Systematics of the tunas and mackerels (Scombridae)., 5
S Chow, 1995, Phylogenetic relationships between tuna species of the genus <italic>Thunnus</italic> (Scombridae: Teleostei): Inconsistent implications from morphology, nuclear and mitochondrial genomes., Journal of Molecular Evolution, 41, 741, 10.1007/BF00173154
S Chow, 2006, Phylogenetic relationships among <italic>Thunnus</italic> species inferred from rDNA ITS1 sequence., Journal of Fish Biology, 68, 24, 10.1111/j.0022-1112.2006.00945.x
RD Ward, 2005, DNA barcoding Australia's fish species., Philosophical Transactions of the Royal Society of London Series B Biological Sciences, 360, 1847, 10.1098/rstb.2005.1716
M Kimura, 1980, A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences., Journal of Molecular Evolution, 16, 111, 10.1007/BF01731581
SF Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs., Nucleic Acids Research, 25, 3389, 10.1093/nar/25.17.3389
T Lefebure, 2006, Relationship between morphological taxonomy and molecular divergence within Crustacea: proposal of a molecular threshold to help species delimitation., Molecular Phylogenetics and Evolution, 40, 435, 10.1016/j.ympev.2006.03.014
MA Paine, 2007, Specific identification of western Atlantic Ocean scombrids using mitochondrial DNA cytochrome <italic>c</italic> oxidase subunit I (COI) gene region sequences., Bulletin of Marine Science, 80, 353
MA Paine, 2008, Specific identification using COI sequence analysis of scombrid larvae collected off the Kona coast of Hawaii Island., Ichthyological Research, 55, 7, 10.1007/s10228-007-0003-4
MJ Hickerson, 2006, DNA barcoding will often fail to discover new animal species over broad parameter space., Systematic Biology, 55, 729, 10.1080/10635150600969898
DP Little, 2007, A comparison of algorithms for the identification of specimens using DNA barcodes: examples from gymnosperms., Cladistics, 23, 1, 10.1111/j.1096-0031.2006.00126.x
KW Will, 2004, Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification., Cladistics, 20, 47, 10.1111/j.1096-0031.2003.00008.x
CE Porch, 2005, The sustainability of western Atlantic bluefin tuna: a warm-blooded fish in a hot-blooded fishery., Bulletin of Marine Science, 76, 363
C Safina, 2001, Tuna conservation., 413
C Safina, 2008, Collapse of bluefin tuna in the Western Atlantic., Conservation Biology, 22, 243, 10.1111/j.1523-1739.2008.00901.x
V Walt, 2008, The sushi wars: can the bluefin tuna be saved?
2008, Lifting the lid on Italy's bluefin tuna fishery – Assesment of compliance of Italy's fishing fleets and farms with management rules during the 2008 bluefin tuna fishing season in the Mediterranean.
B Southerland, 2008, The tragic tale of the last tuna.
Anonymous, 2008, Tuna in trouble.
GD Hurry, 2008, Report of the independent review. Marrakech, Morocco: International Commision for the Conservation of Atlantic Tunas (ICCAT).
2008, Tuna commission comes up with “a disgrace, not a decision”.
R DeSalle, 2004, The expansion of conservation genetics., Nature Reviews Genetics, 5, 702, 10.1038/nrg1425
NV Ivanova, 2007, Universal primer cocktails for fish DNA barcoding., Molecular Ecology Notes, 7, 544, 10.1111/j.1471-8286.2007.01748.x
J Messing, 1983, New M13 vectors for cloning., Methods Enzymology, 101, 20, 10.1016/0076-6879(83)01005-8
IN Sarkar, 2002, An automated phylogenetic key for classifying homeoboxes., Molecular Phylogenetics and Evolution, 24, 388, 10.1016/S1055-7903(02)00259-2
IN Sarkar, 2008, CAOS software for use in character-based DNA barcoding., Molecular Ecology Resources, 8, 1256, 10.1111/j.1755-0998.2008.02235.x
K Tamura, 2007, MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0., Molecular Biology and Evolution, 24, 1596, 10.1093/molbev/msm092
HA Ross, 2008, Testing the reliability of genetic methods of species identification via simulation., Systematic Biology, 57, 216, 10.1080/10635150802032990
R Meier, 2006, DNA barcoding and taxonomy in diptera: A tale of high intraspecific variability and low identification success., Systematic Biology, 55, 715, 10.1080/10635150600969864
RC Edgar, 2004, MUSCLE: multiple sequence alignment with high accuracy and high throughput., Nucleic Acids Research, 32, 1792, 10.1093/nar/gkh340
R Vilgalys, 2003, Taxonomic misidentification in public DNA databases., New Phytologist, 160, 4, 10.1046/j.1469-8137.2003.00894.x
PD Hebert, 2004, Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly <italic>Astraptes fulgerator</italic>., Proceedings of the National Academy of Sciences of the United States of America, 101, 14812, 10.1073/pnas.0406166101
HF Yancy, 2008, Potential use of DNA barcodes in regulatory science: applications of the Regulatory Fish Encyclopedia., Journal of Food Protection, 71, 210, 10.4315/0362-028X-71.1.210
R Meier, 2008, The use of mean instead of smallest interspecific distances exaggerates the size of the “barcoding gap” and leads to misidentification., Systematic Biology, 57, 809, 10.1080/10635150802406343
D Rubinoff, 2006, Utility of mitochondrial DNA barcodes in species conservation., Conservation Biology, 20, 1026, 10.1111/j.1523-1739.2006.00372.x
L Prendini, 2005, Comment on “Identifying spiders through DNA barcodes”., Canadian Journal of Zoology, 83, 498, 10.1139/z05-025
T Backeljau, 1996, Multiple UPGMA and neighbor-joining trees and the performance of some computer packages., Molecular Biology and Evolution, 133, 309, 10.1093/oxfordjournals.molbev.a025590
JS Farris, 1996, Parsimony jackknifing outperforms neighbor-joining., Cladistics, 12, 99, 10.1111/j.1096-0031.1996.tb00196.x
N Takezaki, 1998, Tie trees generated by distance methods of phylogenetic reconstruction., Molecular Biology and Evolution, 15, 727, 10.1093/oxfordjournals.molbev.a025976
AVZ Brower, 2006, Problems with DNA barcodes for species delimitation: ‘ten species’ of <italic>Astraptes fulgerator</italic> reassessed (Lepidoptera: Hesperiidae)., Systematics and Biodiversity, 4, 127, 10.1017/S147720000500191X
MR de Carvalho, 2008, Systematics must embrace comparative biology and evolution, not speed and automation., Evolutionary Biology, 35, 150, 10.1007/s11692-008-9018-7
R DeSalle, 2006, Species discovery versus species identification in DNA barcoding efforts: Response to Rubinoff., Conservation Biology, 20, 1545, 10.1111/j.1523-1739.2006.00543.x
QD Wheeler, 2005, Losing the plot: DNA “barcodes” and taxonomy., Cladistics, 21, 405, 10.1111/j.1096-0031.2005.00075.x
KW Will, 2005, The perils of DNA barcoding and the need for integrative taxonomy., Systematic Biology, 54, 844, 10.1080/10635150500354878
J Rach, 2008, Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata., Proceedings of the Royal Society of London Series B Biological Sciences, 275, 237, 10.1098/rspb.2007.1290
RP Kelly, 2007, DNA barcoding using chitons (genus <italic>Mopalia</italic>)., Molecular Ecology Notes, 7, 177, 10.1111/j.1471-8286.2006.01641.x
M Kochzius, 2008, DNA microarrays for identifying fishes., Marine Biotechnology, 10, 207, 10.1007/s10126-007-9068-3
C Catarci, 2005, The world tuna industry–an analysis of imports and prices, and of the combined impact on catches and tuna capacity., 279
2008, Report of the Performance Review. Canberra, Australia.
J Majkowski, 2007, Global fishery resources of tuna and tuna-like species. FAO Fisheries Technical Paper. No. 483. Rome.
V Atanassova, 2008, Microbiological quality of sushi from sushi bars and retailers., Journal of Food Protection, 71, 860, 10.4315/0362-028X-71.4.860
EK Lipp, 1997, The role of seafood in foodborne diseases in the United States of America., Revue Scientifique et Technique de l'Office International des Epizooties, 16, 620, 10.20506/rst.16.2.1048
R Nakagawa, 1997, Total mercury intake from fish and shellfish by Japanese people., Chemosphere, 35, 2909, 10.1016/S0045-6535(97)00351-2
T Oshima, 1987, Anisakiasis - is the sushi bar guilty., Parasitology Today, 3, 44, 10.1016/0169-4758(87)90212-2
CA Logan, 2008, An impediment to consumer choice: overfished species are sold as Pacific red snapper., Biological Conservation, 141, 1591, 10.1016/j.biocon.2008.04.007
NJ Besansky, 2003, DNA barcoding of parasites and invertebrate disease vectors: what you don't know can hurt you., Trends in Parasitology, 19, 545, 10.1016/j.pt.2003.09.015
2004, Opinion of the Scientific Panel on Contaminants in the Food Chain on a request from the Commission related to the toxicity of fishery products belonging to the family of Gempylidae., EFSA Journal, 92, 1
C Shadbolt, 2002, Diarrhoea associated with consumption of escolar (rudderfish)., Communicable Diseases Intelligence, 26, 3
JIL Moreno, 2005, Status of the tuna stocks of the world., 58
S Bose, 1996, Substitutability among species in the Japanese tuna market: a cointegration analysis., Marine Resource Economics, 11, 143, 10.1086/mre.11.3.42629157
T Corson, 2007, The zen of fish: the story of sushi, from Samurai to supermarket.
Anonymous, 2008, Nobu chain to tell diners which tuna dishes are bluefin. London: Telegraph. Published 26 September, 2008.
2008, Thousands join bluefin tuna boycott.
MF Teisl, 2002, Can eco-labels tune a market? Evidence from dolphin-safe labeling., Journal of Environmental Economics and Management, 43, 339, 10.1006/jeem.2000.1186
D Quammen, 2000, The boilerplate rhino: nature in the eye of the beholder.
2008
A Punt, 1996, 2008 IUCN Red List of Threatened Species: <italic>Thunnus maccoyii</italic>.
2008, Report of the Independent Expert. Deakin West, ACT, Australia.
T Polacheck, Implications of the Japanese overcatch of Southern bluefin tuna for data collection and assessments of tropical tuna; 2007 16–20 July; Victoria, Seychelles., Indian Ocean Tuna Commission
C Safina, 1993, Bluefin tuna in the West Atlantic - negligent management and the making of an endangered species., Conservation Biology, 7, 229, 10.1046/j.1523-1739.1993.07020229.x
2008, Fishery Status Reports 2007: Southern bluefin tuna fishery.