The Making of the African mtDNA Landscape

1997 Alves-Silva, 2000, The ancestry of Brazilian mtDNA lineages, Am J Hum Genet, 67, 444, 10.1086/303004 Anderson, 1981, Sequence and organisation of the human mitochondrial genome, Nature, 290, 457, 10.1038/290457a0 Bakel, 1981, The “Bantu” expansion: demographic models, Curr Anth, 22, 688, 10.1086/202753 Bandelt, 2001, Phylogeography of the human mitochondrial L3e: a snapshot of African prehistory and Atlantic slave trade, Ann Hum Genet, 65, 549, 10.1046/j.1469-1809.2001.6560549.x Bandelt, 1997, The myth of bumpy hunter-gatherer mismatch distributions, Am J Hum Genet, 61, 980, 10.1086/514878 Bandelt, 1999, Median-joining networks for inferring intraspecific phylogenies, Mol Biol Evol, 16, 37, 10.1093/oxfordjournals.molbev.a026036 Bandelt, 1995, Mitochondrial portraits of human populations using median networks, Genetics, 141, 743, 10.1093/genetics/141.2.743 Blench, 1993, Recent developments in African language classification Bortolini, 1997, Evolutionary and anthropological implications of mitochondrial DNA variation in African Brazilian populations, Hum Biol, 69, 141 Bosch, 2001, High-resolution analysis of human Y-chromosome variation shows a sharp discontinuity and limited gene flow between northwestern Africa and the Iberian Peninsula, Am J Hum Genet, 68, 1019, 10.1086/319521 Bradley, 1996, Mitochondrial diversity and the origins of African and European cattle, Proc Natl Acad Sci USA, 14, 5131, 10.1073/pnas.93.10.5131 Brakez, 2001, Human mitochondrial DNA sequence variation in the Moroccan population of the Souss Area, Ann Hum Biol, 28, 295, 10.1080/030144601300119106 Brehm, 2002, Mitochondrial portrait of the Cabo Verde archipelago: the Senegambian outpost of the Atlantic slave trade, Ann Hum Genet, 66, 49, 10.1017/S0003480001001002 Cavalli-Sforza, 1994 Chen, 2000, mtDNA variation in the South African Kung and Khwe—and their genetic relationships to other African populations, Am J Hum Genet, 66, 1362, 10.1086/302848 Chen, 1995, Analysis of mtDNA variation in African populations reveals the most ancient of all human continent-specific haplogroups, Am J Hum Genet, 57, 133 Clark, 1994, Africa from the appearance of Homo sapiens sapiens to the beginnings of food production, Vol. I, 191 Côrte-Real, 1996, Genetic diversity in the Iberian Peninsula determined from mitochondrial sequence analysis, Ann Hum Genet, 60, 331, 10.1111/j.1469-1809.1996.tb01196.x Cruciani, 2002, A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes, Am J Hum Genet, 70, 1197, 10.1086/340257 Deacon, 1989, Late Pleistocene palaeolecology and archaeology in the Southern Cape, South Africa, 547 Eggert, 1993, Central Africa and the archaeology of the equatorial rainforest: reflections on some major topics, 289 Excoffier, 1992, Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data, Genetics, 131, 479, 10.1093/genetics/131.2.479 Forster, 1996, Origin and evolution of Native American mtDNA variation: a reappraisal, Am J Hum Genet, 59, 935 Graven, 1995, Evolutionary correlation between control region sequence and restriction polymorphisms in the mitochondrial genome of a large Senegalese Mandenka sample, Mol Biol Evol, 12, 334 Green, 2000, mtDNA affinities of the peoples of North-Central Mexico, Am J Hum Genet, 66, 989, 10.1086/302801 Greenberg, 1963 Greenberg, 1972, Linguistic evidence concerning Bantu origins, J Afr Hist, 13, 189, 10.1017/S0021853700011427 Grün, 1991, Electron spin resonance dating and the evolution of modern humans, Archaeometry, 33, 153, 10.1111/j.1475-4754.1991.tb00696.x Guthrie, 1970, Contributions from comparative Bantu studies to the prehistory of Africa, 20 Hammer, 2001, Hierarchical patterns of global human Y-chromosome diversity, Mol Biol Evol, 18, 1189, 10.1093/oxfordjournals.molbev.a003906 Herrnstadt, 2002, Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups, Am J Hum Genet, 70, 1152, 10.1086/339933 Hiernaux, 1968, Bantu expansion: the evidence from physical anthropology confronted with linguistic and archaeological evidence, J Afr Hist, 9, 505, 10.1017/S0021853700009014 Hiernaux, 1975 Horai, 1995, Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs, Proc Natl Acad Sci USA, 7, 532, 10.1073/pnas.92.2.532 Howell, 2000, Persistent heteroplasmy of a mutation in the human mtDNA control region: hypermutation as an apparent consequence of simple-repeat expansion/contraction, Am J Hum Genet, 66, 1589, 10.1086/302910 Huffman, 1982, Archaeology and the ethnohistory of the African Iron Age, Annu Rev Anthropol, 11, 133, 10.1146/annurev.an.11.100182.001025 Ingman, 2000, Mitochondrial genome variation and the origin of modern humans, Nature, 408, 708, 10.1038/35047064 Johnston, 1913, A survey of the ethnography of Africa and the former racial and tribal migrations in that continent, J R Anthropol Inst, 43, 345 Krings, 2000, A view of Neandertal genetic diversity, Nat Genet, 26, 144, 10.1038/79855 Krings, 1999, mtDNA analysis of Nile River Valley populations: a genetic corridor or a barrier to migration?, Am J Hum Genet, 64, 1166, 10.1086/302314 Krings, 1997, Neandertal DNA sequences and the origin of modern humans, Cell, 11, 19, 10.1016/S0092-8674(00)80310-4 Kuper, 1978, Social anthropology and the Bantu expansions, Africa, 48, 335, 10.2307/1158800 Lwanga-Lunyiigo, 1976, The Bantu problem reconsidered, Curr Anthropol, 17, 282, 10.1086/201717 Maca-Meyer, 2001, Major genomic mitochondrial lineages delineate early human expansions, BMC Genet, 2, 13, 10.1186/1471-2156-2-13 Macaulay, 1999, The emerging tree of west Eurasian mtDNAs: a synthesis of control-region sequences and RFLPs, Am J Hum Genet, 64, 232, 10.1086/302204 MacEachern, 2000, Genes, tribes, and African history, Curr Anthropol, 41, 357, 10.1086/300144 Maley, 1993, Climatic and vegetational history of the equatorial regions, 43 Martí, 2001, Edad de piedra en los bosques Centroafricanos, Investigación y Ciencia, 303, 30 Mateu, 1997, A tale of two islands: population history and mitochondrial DNA sequence variation of Bioko and São Tomé, Gulf of Guinea, Ann Hum Genet, 61, 507, 10.1017/S0003480097006544 Monsalve, 1997, Mitochondrial DNA polymorphisms in Carib people of Belize, Proc R Soc Lond B Biol Sci USA, 264, 1217, 10.1098/rspb.1997.0168 Newman, 1995 Ovchinnikov, 2000, Molecular analysis of Neanderthal DNA from the northern Caucasus, Nature, 30, 490, 10.1038/35006625 Thomas, 2002, Founding mothers of Jewish communities: geographically separated Jewish groups were independently founded by very few female ancestors, Am J Hum Genet, 70, 1411, 10.1086/340609 Passarino, 1998, Different genetic components in the Ethiopian population, identified by mtDNA and Y-chromosome polymorphisms, Am J Hum Genet, 62, 420, 10.1086/301702 Pereira, 2001, Prehistoric and historic traces in the mtDNA of Mozambique: insights into the Bantu expansions and the slave trade, Ann Hum Genet, 65, 439, 10.1046/j.1469-1809.2001.6550439.x Phillipson, 1993 Pinto, 1996, Genetic relationship between the Canary Islanders and their African and Spanish ancestors inferred from mitochondrial DNA sequences, Ann Hum Genet, 60, 321, 10.1111/j.1469-1809.1996.tb01195.x Quintana-Murci, 1999, Genetic evidence of an early exit of Homo sapiens sapiens from Africa through eastern Africa, Nat Genet, 23, 437, 10.1038/70550 Rando, 1999, Phylogeographic patterns of mtDNA reflecting the colonization of the Canary Islands, Ann Hum Genet, 63, 413, 10.1046/j.1469-1809.1999.6350413.x Rando, 1998, Mitochondrial DNA analysis of northwest African populations reveals genetic exchanges with European, Near-Eastern, and sub-Saharan populations, Ann Hum Genet, 62, 531, 10.1046/j.1469-1809.1998.6260531.x Richards, 1996, Paleolithic and neolithic lineages in the European mitochondrial gene pool, Am J Hum Genet, 59, 185 Richards, 2000, Genetic data and the colonization of Europe: genealogies and founders, 139 Richards, 2000, Tracing European founder lineages in the Near Eastern mtDNA pool, Am J Hum Genet, 67, 1251, 10.1016/S0002-9297(07)62954-1 Saillard, 2000, mtDNA Variation among Greenland Eskimos: the edge of the Beringian expansion, Am J Hum Genet, 67, 718, 10.1086/303038 Salas, 1998, mtDNA analysis of the Galician population: a genetic edge of European variation, Eur J Hum Genet, 6, 365, 10.1038/sj.ejhg.5200202 Scozzari, 1999, Combined use of biallelic and microsatellite Y-chromosome polymorphisms to infer affinities among African populations, Am J Hum Genet, 65, 829, 10.1086/302538 Scozzari, 1988, Genetic studies on the Senegal population. I. Mitochondrial DNA polymorphisms, Am J Hum Genet, 43, 534 Soodyall H (1993) Mitochondrial DNA polymorphisms in southern African populations. PhD thesis, University of Witwatersrand, Johannesburg Soodyall, 1992, Mitochondrial DNA polymorphisms in Khoisan populations from Southern Africa, Ann Hum Genet, 56, 315, 10.1111/j.1469-1809.1992.tb01159.x Soodyall, 1993, Mitochondrial DNA polymorphisms in Negroid populations from Namibia: new light on the origins of the Dama, Herero and Ambo, Ann Hum Biol, 20, 477, 10.1080/03014469300002872 Soodyall, 1996, mtDNA control-region sequence variation suggests multiple independent origins of an “Asian-specific” 9-bp deletion in sub-Saharan Africans, Am J Hum Genet, 58, 595 Stine, 1992, The evolution of two west African populations, J Mol Evol, 34, 336, 10.1007/BF00160241 Tajima, 1989, Statistical method for testing the neutral mutation hypothesis by DNA polymorphism, Genetics, 123, 585, 10.1093/genetics/123.3.585 Thomas, 1997 Thomas, 2000, Y chromosomes traveling south: the Cohen modal haplotype and the origins of the Lemba—the “Black Jews of Southern Africa.”, Am J Hum Genet, 66, 674, 10.1086/302749 Torroni, 2001, Do the four clades of the mtDNA haplogroup L2 evolve at different rates?, Am J Hum Genet, 69, 1348, 10.1086/324511 Underhill, 2001, The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations, Ann Hum Genet, 65, 43, 10.1046/j.1469-1809.2001.6510043.x Underhill, 2000, Y chromosome sequence variation and the history of human populations, Nat Genet, 26, 358, 10.1038/81685 Vansina, 1995, New linguistic evidence and the “Bantu expansion.”, J Afr Hist, 36, 173, 10.1017/S0021853700034101 Vigilant, 1989, Mitochondrial DNA sequences in single hairs from a southern African population, Proc Natl Acad Sci USA, 86, 9350, 10.1073/pnas.86.23.9350 Vigilant, 1991, African populations and the evolution of mitochondrial DNA, Science, 253, 1503, 10.1126/science.1840702 Vogel, 1994, Bantu expansion, 435 Vogel, 1994, Eastern and south-central African iron age, 439 Watson, 1996, mtDNA sequence diversity in Africa, Am J Hum Genet, 59, 437 Watson, 1997, Mitochondrial footprints of human expansions in Africa, Am J Hum Genet, 61, 691, 10.1086/515503 Whitelaw, 1994, Southern African Iron Age, 444 Wilson, 1995, Validation of mitochondrial DNA sequencing for forensic casework analysis, Int J Legal Med, 108, 68, 10.1007/BF01369907 Y Chromosome Consortium, 2002, A nomenclature system for the tree of human Y-chromosomal binary haplogroups, Genome Res, 12, 339, 10.1101/gr.217602