The Glycerophospho Metabolome and Its Influence on Amino Acid Homeostasis Revealed by Brain Metabolomics of GDE1(−/−) Mice
Tài liệu tham khảo
Bajad, 2006, Separation and quantitation of water soluble cellular metabolites by hydrophilic interaction chromatography-tandem mass spectrometry, J. Chromatogr. A, 1125, 76, 10.1016/j.chroma.2006.05.019
Basu, 2009, Targeted disruption of serine racemase affects glutamatergic neurotransmission and behavior, Mol. Psychiatry, 14, 719, 10.1038/mp.2008.130
Benton, 2008, XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization, Anal. Chem., 80, 6382, 10.1021/ac800795f
Chiang, 2006, An enzyme that regulates ether lipid signaling pathways in cancer annotated by multidimensional profiling, Chem. Biol., 13, 1041, 10.1016/j.chembiol.2006.08.008
Corda, 2009, The developmentally regulated osteoblast phosphodiesterase GDE3 is glycerophosphoinositol-specific and modulates cell growth, J. Biol. Chem., 284, 24848, 10.1074/jbc.M109.035444
Corda, 2009, The glycerophosphoinositols: cellular metabolism and biological functions, Cell. Mol. Life Sci., 66, 3449, 10.1007/s00018-009-0113-4
Dang, 2009, Cancer-associated IDH1 mutations produce 2-hydroxyglutarate, Nature, 462, 739, 10.1038/nature08617
de Koning, 2004, Serine-deficiency syndromes, Curr. Opin. Neurol., 17, 197, 10.1097/00019052-200404000-00019
Dowd, 2001, Turnover of phosphatidylcholine in Saccharomyces cerevisiae. The role of the CDP-choline pathway, J. Biol. Chem., 276, 3756, 10.1074/jbc.M003694200
Emilsson, 1984, Differential activation of phosphatidylinositol deacylation and a pathway via diphosphoinositide in macrophages responding to zymosan and ionophore A23187, J. Biol. Chem., 259, 3111, 10.1016/S0021-9258(17)43267-4
Falasca, 1996, Changes in the levels of glycerophosphoinositols during differentiation of hepatic and neuronal cells, Eur. J. Biochem., 241, 386, 10.1111/j.1432-1033.1996.00386.x
Falasca, 1997, Fast receptor-induced formation of glycerophosphoinositol-4-phosphate, a putative novel intracellular messenger in the Ras pathway, Mol. Biol. Cell, 8, 443, 10.1091/mbc.8.3.443
Fisher, 2005, Glycerophosphocholine-dependent growth requires Gde1p (YPL110c) and Git1p in Saccharomyces cerevisiae, J. Biol. Chem., 280, 36110, 10.1074/jbc.M507051200
Furuya, 2000, L-serine and glycine serve as major astroglia-derived trophic factors for cerebellar Purkinje neurons, Proc. Natl. Acad. Sci. USA, 97, 11528, 10.1073/pnas.200364497
Gallazzini, 2008, GDPD5 is a glycerophosphocholine phosphodiesterase that osmotically regulates the osmoprotective organic osmolyte GPC, Proc. Natl. Acad. Sci. USA, 105, 11026, 10.1073/pnas.0805496105
Garrett, 2009, Identification of phosphatidylserylglutamate: a novel minor lipid in Escherichia coli, J. Lipid Res., 50, 1589, 10.1194/jlr.M800549-JLR200
Guan, 2007, Identification of N-acylphosphatidylserine molecules in eukaryotic cells, Biochemistry, 46, 14500, 10.1021/bi701907g
Henneberger, 2010, Long-term potentiation depends on release of D-serine from astrocytes, Nature, 463, 232, 10.1038/nature08673
Inoue, 2008, NMDA- and beta-amyloid1-42-induced neurotoxicity is attenuated in serine racemase knock-out mice, J. Neurosci., 28, 14486, 10.1523/JNEUROSCI.5034-08.2008
Ivanova, 2009, Lipidomics: a mass spectrometry based systems level analysis of cellular lipids, Curr. Opin. Chem. Biol., 13, 526, 10.1016/j.cbpa.2009.08.011
Jackson, 2008, Targeted metabolomic analysis of Escherichia coli by desorption electrospray ionization and extractive electrospray ionization mass spectrometry, Anal. Biochem., 375, 272, 10.1016/j.ab.2008.01.011
Klivenyi, 2005, Effects of mitochondrial toxins on the brain amino acid concentrations, Neurochem. Res., 30, 1421, 10.1007/s11064-005-8512-x
Larson, 1983, Periplasmic glycerophosphodiester phosphodiesterase of Escherichia coli, a new enzyme of the glp regulon, J. Biol. Chem., 258, 5428, 10.1016/S0021-9258(20)81908-5
Lencina, 2008, New efficient enantioselective synthesis of 2-oxopiperazines: a practical access to chiral 3-substituted 2-oxopiperazines, Tetrahedron Asymmetry, 19, 1689, 10.1016/j.tetasy.2008.06.030
Mariggio, 2006, Molecular characterization of a glycerophosphoinositol transporter in mammalian cells, FEBS Lett., 580, 6789, 10.1016/j.febslet.2006.11.039
Martin, 1995, Early redistribution of plasma membrane phosphatidylserine is a general feature of apoptosis regardless of the initiating stimulus: inhibition by overexpression of Bcl-2 and Abl, J. Exp. Med., 182, 1545, 10.1084/jem.182.5.1545
McNally, 2006, Functional characterization of the flagellar glycosylation locus in Campylobacter jejuni 81-176 using a focused metabolomics approach, J. Biol. Chem., 281, 18489, 10.1074/jbc.M603777200
McNally, 2007, Targeted metabolomics analysis of Campylobacter coli VC167 reveals legionaminic acid derivatives as novel flagellar glycans, J. Biol. Chem., 282, 14463, 10.1074/jbc.M611027200
Mothet, 2000, D-serine is an endogenous ligand for the glycine site of the N-methyl-D-aspartate receptor, Proc. Natl. Acad. Sci. USA, 97, 4926, 10.1073/pnas.97.9.4926
Murray, 2005, Nte1p-mediated deacylation of phosphatidylcholine functionally interacts with Sec14p, J. Biol. Chem., 280, 8544, 10.1074/jbc.M413999200
Nagata, 1994, Distribution of free D-serine in vertebrate brains, Brain Res., 634, 291, 10.1016/0006-8993(94)91932-1
Patton-Vogt, 2007, Transport and metabolism of glycerophosphodiesters produced through phospholipid deacylation, Biochim. Biophys. Acta, 1771, 337, 10.1016/j.bbalip.2006.04.013
Patton-Vogt, 1998, GIT1, a gene encoding a novel transporter for glycerophosphoinositol in Saccharomyces cerevisiae, Genetics, 149, 1707, 10.1093/genetics/149.4.1707
Rabinowitz, 2007, Acidic acetonitrile for cellular metabolome extraction from Escherichia coli, Anal. Chem., 79, 6167, 10.1021/ac070470c
Rao, 2005, Transmembrane protein GDE2 induces motor neuron differentiation in vivo, Science, 309, 2212, 10.1126/science.1117156
Saghatelian, 2004, Assignment of endogenous substrates to enzymes by global metabolite profiling, Biochemistry, 43, 14332, 10.1021/bi0480335
Simon, 2006, Endocannabinoid biosynthesis proceeding through glycerophospho-N-acyl ethanolamine and a role for alpha/beta-hydrolase 4 in this pathway, J. Biol. Chem., 281, 26465, 10.1074/jbc.M604660200
Simon, 2008, Anandamide biosynthesis catalyzed by the phosphodiesterase GDE1 and detection of glycerophospho-N-acyl ethanolamine precursors in mouse brain, J. Biol. Chem., 283, 9341, 10.1074/jbc.M707807200
Simon, 2010, Characterization of mice lacking candidate N-acyl ethanolamine biosynthetic enzymes provides evidence for multiple pathways that contribute to endocannabinoid production in vivo, Mol. Biosyst., 6, 1411, 10.1039/c000237b
Smith, 2006, XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification, Anal. Chem., 78, 779, 10.1021/ac051437y
Snyder, 2000, D-amino acids as putative neurotransmitters: focus on D-serine, Neurochem. Res., 25, 553, 10.1023/A:1007586314648
Tagore, 2009, Peptidase substrates via global peptide profiling, Nat. Chem. Biol., 5, 23, 10.1038/nchembio.126
Tang, 2009, Elucidation of functions of human cytochrome P450 enzymes: identification of endogenous substrates in tissue extracts using metabolomic and isotopic labeling approaches, Anal. Chem., 81, 3071, 10.1021/ac900021a
Tommassen, 1991, Characterization of two genes, glpQ and ugpQ, encoding glycerophosphoryl diester phosphodiesterases of Escherichia coli, Mol. Gen. Genet., 226, 321, 10.1007/BF00273621
Vinayavekhin, 2009, Regulation of alkyl-dihydrothiazole-carboxylates (ATCs) by iron and the pyochelin gene cluster in Pseudomonas aeruginosa, ACS Chem. Biol., 4, 617, 10.1021/cb900075n
Wolosker, 1999, Serine racemase: a glial enzyme synthesizing D-serine to regulate glutamate-N-methyl-D-aspartate neurotransmission, Proc. Natl. Acad. Sci. USA, 96, 13409, 10.1073/pnas.96.23.13409
Yamamoto, 2003, Characterization of rapid and high-affinity uptake of L-serine in neurons and astrocytes in primary culture, FEBS Lett., 548, 69, 10.1016/S0014-5793(03)00742-7
Yamasaki, 2001, 3-Phosphoglycerate dehydrogenase, a key enzyme for l-serine biosynthesis, is preferentially expressed in the radial glia/astrocyte lineage and olfactory ensheathing glia in the mouse brain, J. Neurosci., 21, 7691, 10.1523/JNEUROSCI.21-19-07691.2001
Yan, 2009, The antioxidant enzyme Prdx1 controls neuronal differentiation by thiol-redox-dependent activation of GDE2, Cell, 138, 1209, 10.1016/j.cell.2009.06.042
Yanaka, 2007, Mammalian glycerophosphodiester phosphodiesterases, Biosci. Biotechnol. Biochem., 71, 1811, 10.1271/bbb.70062
Yanaka, 2003, Novel membrane protein containing glycerophosphodiester phosphodiesterase motif is transiently expressed during osteoblast differentiation, J. Biol. Chem., 278, 43595, 10.1074/jbc.M302867200
Zheng, 2000, MIR16, a putative membrane glycerophosphodiester phosphodiesterase, interacts with RGS16, Proc. Natl. Acad. Sci. USA, 97, 3999, 10.1073/pnas.97.8.3999
Zheng, 2003, GDE1/MIR16 is a glycerophosphoinositol phosphodiesterase regulated by stimulation of G protein-coupled receptors, Proc. Natl. Acad. Sci. USA, 100, 1745, 10.1073/pnas.0337605100