The Developmental Timing Regulator AIN-1 Interacts with miRISCs and May Target the Argonaute Protein ALG-1 to Cytoplasmic P Bodies in C. elegans

Molecular Cell - Tập 19 - Trang 437-447 - 2005
Lei Ding1, Andrew Spencer1, Kiyokazu Morita1, Min Han1
1Howard Hughes Medical Institute, Department of Molecular, Cellular, and Developmental Biology, University of Colorado at Boulder, Boulder, Colorado 80309

Tài liệu tham khảo

Abrahante, 2003, The Caenorhabditis elegans hunchback-like gene lin-57/hbl-1 controls developmental time and is regulated by microRNAs, Dev. Cell, 4, 625, 10.1016/S1534-5807(03)00127-8 Ambros, 2000, Control of developmental timing in Caenorhabditis elegans, Curr. Opin. Genet. Dev., 10, 428, 10.1016/S0959-437X(00)00108-8 Ambros, 2004, The functions of animal microRNAs, Nature, 431, 350, 10.1038/nature02871 Ambros, 2003, MicroRNAs and other tiny endogenous RNAs in C. elegans, Curr. Biol., 13, 807, 10.1016/S0960-9822(03)00287-2 Bartel, 2004, MicroRNAs: genomics, biogenesis, mechanism, and function, Cell, 116, 281, 10.1016/S0092-8674(04)00045-5 Beitel, 1995, The Caenorhabditis elegans gene lin-1 encodes an ETS-domain protein and defines a branch of the vulval induction pathway, Genes Dev., 9, 3149, 10.1101/gad.9.24.3149 Brenner, 1974, The genetics of Caenorhabditis elegans, Genetics, 77, 71, 10.1093/genetics/77.1.71 Coller, 2004, Eukaryotic mRNA decapping, Annu. Rev. Biochem., 73, 861, 10.1146/annurev.biochem.73.011303.074032 Cougot, 2004, Cytoplasmic foci are sites of mRNA decay in human cells, J. Cell Biol., 165, 31, 10.1083/jcb.200309008 Cougot, 2004, ‘Cap-tabolism’, Trends Biochem. Sci., 29, 436, 10.1016/j.tibs.2004.06.008 Elbashir, 2001, RNA interference is mediated by 21- and 22-nucleotide RNAs, Genes Dev., 15, 188, 10.1101/gad.862301 Euling, 1996, Heterochronic genes control cell cycle progress and developmental competence of C. elegans vulva precursor cells, Cell, 84, 667, 10.1016/S0092-8674(00)81045-4 Eystathioy, 2002, A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles, Mol. Biol. Cell, 13, 1338, 10.1091/mbc.01-11-0544 Eystathioy, 2003, The GW182 protein colocalizes with mRNA degradation associated proteins hDcp1 and hLSm4 in cytoplasmic GW bodies, RNA, 9, 1171, 10.1261/rna.5810203 Ferguson, 1985, Identification and characterization of 22 genes that affect the vulval cell lineages of the nematode Caenorhabditis elegans, Genetics, 110, 17, 10.1093/genetics/110.1.17 Ferguson, 1989, The multivulva phenotype of certain Caenorhabditis elegans mutants results from defects in two functionally redundant pathways, Genetics, 123, 109, 10.1093/genetics/123.1.109 Greenwald, 1997, Development of the vulva, 519 Grishok, 2001, Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing, Cell, 106, 23, 10.1016/S0092-8674(01)00431-7 Hammond, 2001, Argonaute2, a link between genetic and biochemical analyses of RNAi, Science, 293, 1146, 10.1126/science.1064023 Hutvagner, 2002, A microRNA in a multiple-turnover RNAi enzyme complex, Science, 297, 2056, 10.1126/science.1073827 Hutvagner, 2004, Sequence-specific inhibition of small RNA function, PLoS Biol., 2, E98, 10.1371/journal.pbio.0020098 Jing, 2005, Involvement of microRNA in AU-rich element-mediated mRNA instability, Cell, 120, 623, 10.1016/j.cell.2004.12.038 Johnson, 2005, RAS is regulated by the let-7 microRNA family, Cell, 120, 635, 10.1016/j.cell.2005.01.014 Ketting, 2001, Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans, Genes Dev., 15, 2654, 10.1101/gad.927801 Kornfeld, 1997, Vulval development in Caenorhabditis elegans, Trends Genet., 13, 55, 10.1016/S0168-9525(97)01005-6 Lim, 2003, The microRNAs of Caenorhabditis elegans, Genes Dev., 17, 991, 10.1101/gad.1074403 Lim, 2005, Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs, Nature, 433, 769, 10.1038/nature03315 Lin, 2003, The C. elegans hunchback homolog, hbl-1, controls temporal patterning and is a probable microRNA target, Dev. Cell, 4, 639, 10.1016/S1534-5807(03)00124-2 Liu, 2005, MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies, Nat. Cell Biol., 7, 719, 10.1038/ncb1274 Martinez, 2002, Single-stranded antisense siRNAs guide target RNA cleavage in RNAi, Cell, 110, 563, 10.1016/S0092-8674(02)00908-X Mello, 1995, DNA transformation, Methods Cell Biol., 48, 451, 10.1016/S0091-679X(08)61399-0 Miller, 1995, Immunofluorescence microscopy, Methods Cell Biol., 4bv8, 365, 10.1016/S0091-679X(08)61396-5 Miller, 1993, lin-31, a Caenorhabditis elegans HNF-3/fork head transcription factor homolog, specifies three alternative cell fates in vulval development, Genes Dev., 7, 933, 10.1101/gad.7.6.933 Mohler, 1998, Dynamics and ultrastructure of developmental cell fusions in the Caenorhabditis elegans hypodermis, Curr. Biol., 8, 1087, 10.1016/S0960-9822(98)70447-6 Mohler, 2002, The type I membrane protein EFF-1 is essential for developmental cell fusion, Dev. Cell, 2, 355, 10.1016/S1534-5807(02)00129-6 Moss, 1997, The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA, Cell, 88, 637, 10.1016/S0092-8674(00)81906-6 Mourelatos, 2002, miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs, Genes Dev., 16, 720, 10.1101/gad.974702 Nelson, 2003, The microRNA world: small is mighty, Trends Biochem. Sci., 28, 534, 10.1016/j.tibs.2003.08.005 Pasquinelli, 2002, Control of developmental timing by micrornas and their targets, Annu. Rev. Cell Dev. Biol., 18, 495, 10.1146/annurev.cellbio.18.012502.105832 Pepper, 2004, The C. elegans heterochronic gene lin-46 affects developmental timing at two larval stages and encodes a relative of the scaffolding protein gephyrin, Development, 131, 2049, 10.1242/dev.01098 Pham, 2004, A Dicer-2-dependent 80s complex cleaves targeted mRNAs during RNAi in Drosophila, Cell, 117, 83, 10.1016/S0092-8674(04)00258-2 Riddle, 1997 Rougvie, 2001, Control of developmental timing in animals, Nat. Rev. Genet., 2, 690, 10.1038/35088566 Sen, 2005, Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies, Nat. Cell Biol., 7, 633, 10.1038/ncb1265 Sheth, 2003, Decapping and decay of messenger RNA occur in cytoplasmic processing bodies, Science, 300, 805, 10.1126/science.1082320 Sternberg, 1986, Pattern formation during vulval development in C. elegans, Cell, 44, 761, 10.1016/0092-8674(86)90842-1 Sternberg, 1998, Genetics of RAS signaling in C. elegans, Trends Genet., 14, 466, 10.1016/S0168-9525(98)01592-3 Sulston, 1977, Post-embryonic cell lineages of the nematode, Caenorhabditis elegans, Dev. Biol., 56, 110, 10.1016/0012-1606(77)90158-0 Tahbaz, 2004, Characterization of the interactions between mammalian PAZ PIWI domain proteins and Dicer, EMBO Rep., 5, 189, 10.1038/sj.embor.7400070 Tan, 1998, MAP kinase signaling specificity mediated by the LIN-1 Ets/LIN-31 WH transcription factor complex during C. elegans vulval induction, Cell, 93, 569, 10.1016/S0092-8674(00)81186-1 Wicks, 2001, Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map, Nat. Genet., 28, 160, 10.1038/88878 Wightman, 1993, Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans, Cell, 75, 855, 10.1016/0092-8674(93)90530-4 Yang, 2004, GW182 is critical for the stability of GW bodies expressed during the cell cycle and cell proliferation, J. Cell Sci., 117, 5567, 10.1242/jcs.01477 Yochem, 1998, A new marker for mosaic analysis in Caenorhabditis elegans indicates a fusion between hyp6 and hyp7, two major components of the hypodermis, Genetics, 149, 1323, 10.1093/genetics/149.3.1323