The Concept of Morphospaces in Evolutionary and Developmental Biology: Mathematics and Metaphors
Tóm tắt
Từ khóa
Tài liệu tham khảo
Arnold SJ, Pfrender ME, Jones A (2001) The adaptive landscape as a conceptual bridge between micro and macroevolution. Genetica 112–113: 9–32.
Bininda-Emonds ORP, Jeffery EJ, Richardson MK (2003) Inverting the hourglass: Quantitative evidence against the phylotypic stage in vertebrate development. Proceedings of the Royal Society London B 270: 341–346.
Blackith RE, Reyment RA (1971) Multivariate Morphometrics. London: Academic Press.
Bookstein FL (1989) Principal warps: Thin plate splines and the decomposition of deformations. IEEE Transactions on Pattern Analysis and Machine Intelligence 11: 567–585.
Bookstein F (1991) Morphometric Tools for Landmark Data: Geometry and Biology. Cambridge: Cambridge University Press.
Bookstein F (1998) A hundred years of morphometrics. Acta Zoologica Academiae Scientarium Hungaricae 44: 7–59.
Dryden IL, Mardia KV (1998) Statistical Shape Analysis. New York: Wiley.
Duboule D (1994) Temporal colinearity and the phylotypic progression: A basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony. Development (Suppl): 135–142.
Fontana W, Schuster P (1998a) Continuity in evolution: On the nature of transitions. Science 280: 1451–1455.
Fontana W, Schuster P (1998b) Shaping space: The possible and the attainable in RNA genotype-phenotype mapping. Journal of Theoretical Biology 194: 491–515.
Foote M (1993) Contributions of individual taxa to overall morphological disparity. Paleobiology 19: 403–419.
Galis F, Metz JAJ (2001) Testing the vulnerability of the phylotypic stage: On modularity and evolutionary conservation. Journal of Experimental Zoology 291: 195–204.
Galton F (1888) Co-relations and their measurement, chiefly from anthropometric data. Proceeding of the Royal Society 45: 135–145.
Gavrilets S (2004) Fitness Landscapes and the Origin of Species. Princeton, NJ: Princeton University Press.
Gould SJ (1977) Ontogeny and Phylogeny. Cambridge, MA: Harvard University Press.
Hofbauer J, Sigmund K (1998) Evolutionary Games and Population Dynamics. Cambridge: Cambridge University Press.
Huttegger S, Mitteroecker P (in preparation) The geometry of phenotype spaces: Invariance and meaningfulness.
Johnson N (2008) Sewall Wright and the development of shifting balance theory. Nature Education 1(1).
Johnson RA, Wichern DW (1998) Applied Multivariate Statistical Analysis. Upper Saddle River, NJ: Prentice Hall.
Kendall D (1981) The statistics of shape. In: Interpreting Multivariate Data (Barnett V, ed), 75–80. New York: Wiley.
Kendall D (1984) Shape manifolds: Procrustean metrics and complex projective spaces. Bulletin of the London Mathematical Society 16: 81–121.
Klingenberg CP, McIntyre GS (1998) Geometric morphometrics of developmental instability: Analyzing patterns of fluctuating asymmetry with Procrustes methods. Evolution 52: 1363–1375.
Manfreda E, Mitteroecker P, Bookstein FL, Schaefer K (2006) Functional morphology of the first cervical vertebra in humans and non-human primates. Anatomical Record, Part B: The New Anatomist 289: 184–194.
Marcus LF (1990) Traditional morphometrics. In: Proceedings of the Michigan Morphometrics Workshop (Rohlf FJ, Bookstein FL, eds), 77–122. Ann Arbor, MI: University of Michigan Museums.
Marcus LF, Hingst-Zaher E, Zaher H (2000) Application of landmark morphometrics to skulls representing the orders of living mammals. Hystrix, Italian Journal of Mammology 11: 27–47.
Mardia KV, Bookstein F, Moreton I (2000) Statistical assessement of bilateral symmetry of shapes. Biometrika 87: 285–300.
Mardia KV, Kent JT, Bibby JM (1979) Multivariate Analysis. London: Academic Press.
McGhee GR (1999) Theoretical Morphology: The Concept and Its Applications. New York: Columbia University Press.
McGhee GR (2007) The Geometry of Evolution: Adaptive Landscapes and Theoretical Morphospaces. Cambridge: Cambridge University Press.
Milne-Edwards H (1844) Considérations sur quelques principes relatifs à la classification naturelle des animaux. Annales des Sciences Naturelles (Zoologie) (Série 3) 1: 65–99.
Mitteroecker P, Bookstein FL (2007) The conceptual and statistical relationship between modularity and morphological integration. Systematic Biology 56: 818–836.
Mitteroecker P, Bookstein FL (2008) The evolutionary role of modularity and integration in the hominoid cranium. Evolution 62: 943–958.
Mitteroecker P, Bookstein FL (2009) The ontogenetic trajectory of the phenotypic covariance matrix, with examples from craniofacial shape in rats and humans. Evolution 63: 727–737.
Mitteroecker P, Gunz P (2009) Advances in geometric morphometrics. Evolutionary Biology 36: 235–247.
Mitteroecker P, Gunz P, Bernhard M, Schaefer K, Bookstein F (2004) Comparison of cranial ontogenetic trajectories among great apes and humans. Journal of Human Evolution 46: 679–697.
Niklas KJ, Kerchner V (1984) Mechanical and photosynthetic constraints on the evolution of plant shape. Paleobiology 10: 79–101.
Pearson K, Morant GM (1934) The Wilkinson head of Oliver Cromwell and its relationship to busts, masks and painted portraits. Biometrika 26: 1–116.
Pigliucci M (2008) Sewall Wright’s adaptive landscapes: 1932 vs. 1988. Biology and Philosophy 23: 591–603.
Raff R (1996) The Shape of Life: Genes, Development, and the Evolution of Animal Form. Chicago: University of Chicago Press.
Rasskin-Gutman D, Buscalioni AD (1996) Affine transformation as a model of virtual form change for generating morphospaces. In: Advances in Morphometrics (Marcus LF, Corti M, Loy A, Slice D, Naylor G, eds), 169–178. New York: Plenum Press.
Raup DM (1966) Geometric analysis of shell coiling: General problems. Journal of Paleontology 40: 1178–1190.
Reyment RA (1991) Multidimensional Paleobiology. New York: Pergamon Press.
Richardson MK, Hanken J, Gooneratne ML, Pieau C, Raynaud A, Selwood L, Wright GM (1997) There is no highly conserved embryonic stage in the vertebrates: Implications for current theories of evolution and development. Anatomy and Embryology 196: 91–106.
Rohlf FJ (1999) Shape statistics: Procrustes superimpositions and tangent spaces. Journal of Classification 16: 197–223.
Rohlf FJ, Marcus LF (1993) A revolution in morphometrics. Trends in Ecology and Evolution 8: 129–132.
Rohlf FJ, Slice DE (1990) Extensions of the Procrustes method for the optimal superimposition of landmarks. Systematic Zoology 39: 40–59.
Rohlf FJ, Sokal RR (1965) Coefficients of correlation and distance in numerical taxonomy. University of Kansas Science Bulletin 45: 3–27.
Schindel DE (1990) Unoccupied morphospace and the coiled geometry of gastropods: Architectural constraints or geometric covariation? In: Causes of Evolution (Ross RA, Allmon WD, eds), 270–304. Chicago: University of Chicago Press.
Simpson GG (1944) Tempo and Mode in Evolution. New York: Columbia University Press.
Slice DE (2001) Landmark coordinates aligned by procrustes analysis do not lie in Kendall’s shape space. Systematic Biology 50: 141–149.
Sneath P, Sokal R (1973) Numerical Taxonomy. San Francisco, CA: Freeman.
Stadler PF (2002) Fitness landscapes. In: Biological Evolution and Statistical Physics (Lässig M, Valleriani A, eds), 187–207. Berlin: Springer.
Stadler BMR, Stadler PF (2004) The topology of evolutionary biology. In: Modeling in Molecular Biology (Ciobanu G, Rozenberg G, eds), 267–286. Berlin: Springer.
Stadler BMR, Stadler PF, Shpak M, Wagner GP (2002) Recombination spaces, metrics, and pretopologies. Zeitschrift för Physikalische Chemie 216: 217–234.
Stadler BMR, Stadler PF, Wagner G, Fontana W (2001) The topology of the possible: Formal spaces underlying patterns of evolutionary change. Journal of Theoretical Biology 213: 241–274.
Suppes P, Krantz DH, Luce RD, Tversky A (1989) Foundations of Measurement, Vol. II: Geometrical, Threshold, and Probabilistic Representations. New York: Academic Press.
Thomas RDK, Reif W-E (1993) The skeleton space: A finite set of organic designs. Evolution 47: 341–360.
Thomas RDK, Shearman RM, Stewart GW (2000) Evolutionary exploitation of design options by the first animals with hard skeletons. Science 288: 1239–1242.
von Baer KE (1828) Entwicklungsgeschichte der Thiere: Beobachtung und Reflexion. Königsberg, Germany: Bornträger.
Wagner GP, Altenberg L (1996) Complex adaptations and the evolution of evolvability. Evolution 50: 967–976.
Wright S (1932) The roles of mutation, inbreeding, crossbreeding, and selection in evolution. Proceedings of the Sixth International Congress of Genetics 1: 356–366.